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LOCUS JX123583 1003 bp RNA linear VRL 09-MAR-2013
DEFINITION HIV-1 isolate LGD221B_560090942203 from Kenya pol protein (pol)
gene, partial cds
ACCESSION JX123583
VERSION JX123583.1 GI:459171245
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1003)
Show all sequences for reference 1
AUTHORS Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
Celum,C.
CONSRTM Partners PrEP Study Team
TITLE Antiretroviral prophylaxis for HIV prevention in heterosexual men
and women
JOURNAL N. Engl. J. Med. 367 (5), 399-410 (2012)
PUBMED 22784037
REFERENCE 2 (bases 1 to 1003)
Show all sequences for reference 2
AUTHORS Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
Celum,C.
CONSRTM Partners PrEP Study Team
TITLE Direct Submission
JOURNAL Submitted (31-MAY-2012) Center for Childhood Infections and
Prematurity, Seattle Children''s Research Institute, 1900 9th Ave,
Seattle, WA 98105, USA
FEATURES Location/Qualifiers
source 1..1003
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="LGD221B_560090942203"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Kenya"
/collection_date="2011"
gene <1..>1003
/gene="pol"
CDS <1..>1003
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="3"
/transl_table="1"
/product="pol protein"
/protein_id="AGG40547.1"
/db_xref="GI:459171246"
/translation="QITLWQRPLVTIKIGGQLKDALLDTGADDTVLEDINLPGKWKPK
MIGGIGGFIKVRQYDQISIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISP
IETVPVTLKPGMDGPRIKQWPLTEEKIKALTEICNEMEKEGKISRVGPENPYNTPVFA
IKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPL
DKNFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRSQNPEI
IIYQYMDDLYVGSDLEIGQHRAKVEELRAHLLKWGFTTPDKKHQKEPPFLWMGYELHP
"
BASE COUNT 400 a 154 c 200 g 248 t 1 other
ORIGIN
1 gtcaaatcac tctttggcar cgaccccttg tcacaataaa aataggagga cagctaaaag
61 atgctctatt agatacagga gcagatgata cagtattaga agatataaat ttgccaggga
121 aatggaaacc aaaaatgata gggggaattg gaggttttat caaggtaaga cagtatgatc
181 agataagtat agaaatttgt ggaaaaaagg ctataggtac agtattagta ggacctacac
241 ctgtcaacat aattggaaga aatatgttga ctcaaattgg ttgtacttta aattttccaa
301 tcagtcctat tgaaactgta ccagtaacat tgaaaccagg aatggatggc ccaaggatta
361 aacaatggcc attaacagaa gaaaaaatca aagcattaac agaaatttgt aatgaaatgg
421 aaaaggaagg aaaaatttca agagtagggc ctgagaatcc atacaatact ccagtatttg
481 ctataaagaa aaaagatagc actaaatgga gaaaattagt agattttaga gaacttaata
541 aaagaaccca ggacttctgg gaagttcaat taggaatacc acatcctgca ggtttaaaaa
601 agaaaaaatc agtaacagta ctagatgtgg gggatgcata tttttcagtt cctttagata
661 aaaattttag aaaatatact gcattcacta tacctagtat aaacaatgag acaccaggaa
721 tcagatatca gtacaatgta cttccacagg gatggaaagg atcaccagca atattccaga
781 gtagcatgac aaaaatctta gagcccttta gatcacaaaa tccagaaata attatctatc
841 aatacatgga tgacttgtat gtaggatctg acttagaaat agggcagcat agagcaaaag
901 tagaagagtt gagagctcat ctattgaagt ggggatttac tacaccagac aaaaagcatc
961 agaaagaacc cccatttctt tggatgggat atgaactcca tcc
//
last modified: Tue May 31 10:56 2022