HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    JX123583		    1003 bp    RNA     linear	VRL 09-MAR-2013
DEFINITION  HIV-1 isolate LGD221B_560090942203 from Kenya pol protein (pol)
	    gene, partial cds
ACCESSION   JX123583
VERSION     JX123583.1 GI:459171245
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1003)
            Show all sequences for reference 1
  AUTHORS   Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
	    Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
	    Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
	    Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
	    Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
	    Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
	    Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
	    Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
	    Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
	    Celum,C.
  CONSRTM   Partners PrEP Study Team
  TITLE     Antiretroviral prophylaxis for HIV prevention in heterosexual men
	    and women
  JOURNAL   N. Engl. J. Med. 367 (5), 399-410 (2012)
  PUBMED    22784037
REFERENCE   2 (bases 1 to 1003)
            Show all sequences for reference 2
  AUTHORS   Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
	    Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
	    Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
	    Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
	    Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
	    Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
	    Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
	    Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
	    Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
	    Celum,C.
  CONSRTM   Partners PrEP Study Team
  TITLE     Direct Submission
  JOURNAL   Submitted (31-MAY-2012) Center for Childhood Infections and
	    Prematurity, Seattle Children''s Research Institute, 1900 9th Ave,
	    Seattle, WA 98105, USA
FEATURES             Location/Qualifiers
     source	     1..1003
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="LGD221B_560090942203"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Kenya"
		     /collection_date="2011"
     gene	     <1..>1003
		     /gene="pol"
     CDS	     <1..>1003
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="3"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AGG40547.1"
		     /db_xref="GI:459171246"
		     /translation="QITLWQRPLVTIKIGGQLKDALLDTGADDTVLEDINLPGKWKPK
		     MIGGIGGFIKVRQYDQISIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISP
		     IETVPVTLKPGMDGPRIKQWPLTEEKIKALTEICNEMEKEGKISRVGPENPYNTPVFA
		     IKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPL
		     DKNFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRSQNPEI
		     IIYQYMDDLYVGSDLEIGQHRAKVEELRAHLLKWGFTTPDKKHQKEPPFLWMGYELHP
		     "
BASE COUNT	400 a	 154 c	  200 g    248 t      1 other
ORIGIN
       1 gtcaaatcac tctttggcar cgaccccttg tcacaataaa aataggagga cagctaaaag 
      61 atgctctatt agatacagga gcagatgata cagtattaga agatataaat ttgccaggga 
     121 aatggaaacc aaaaatgata gggggaattg gaggttttat caaggtaaga cagtatgatc 
     181 agataagtat agaaatttgt ggaaaaaagg ctataggtac agtattagta ggacctacac 
     241 ctgtcaacat aattggaaga aatatgttga ctcaaattgg ttgtacttta aattttccaa 
     301 tcagtcctat tgaaactgta ccagtaacat tgaaaccagg aatggatggc ccaaggatta 
     361 aacaatggcc attaacagaa gaaaaaatca aagcattaac agaaatttgt aatgaaatgg 
     421 aaaaggaagg aaaaatttca agagtagggc ctgagaatcc atacaatact ccagtatttg 
     481 ctataaagaa aaaagatagc actaaatgga gaaaattagt agattttaga gaacttaata 
     541 aaagaaccca ggacttctgg gaagttcaat taggaatacc acatcctgca ggtttaaaaa 
     601 agaaaaaatc agtaacagta ctagatgtgg gggatgcata tttttcagtt cctttagata 
     661 aaaattttag aaaatatact gcattcacta tacctagtat aaacaatgag acaccaggaa 
     721 tcagatatca gtacaatgta cttccacagg gatggaaagg atcaccagca atattccaga 
     781 gtagcatgac aaaaatctta gagcccttta gatcacaaaa tccagaaata attatctatc 
     841 aatacatgga tgacttgtat gtaggatctg acttagaaat agggcagcat agagcaaaag 
     901 tagaagagtt gagagctcat ctattgaagt ggggatttac tacaccagac aaaaagcatc 
     961 agaaagaacc cccatttctt tggatgggat atgaactcca tcc
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health