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LOCUS	    JQ898245		    3021 bp    DNA     linear	VRL 07-NOV-2012
DEFINITION  Human immunodeficiency virus isolate 801 pol protein gene, partial
	    cds
ACCESSION   JQ898245
VERSION     JQ898245.1 GI:410585815
KEYWORDS    .
SOURCE	    Human immunodeficiency virus
  ORGANISM  Human immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group; unclassified Primate lentivirus group
REFERENCE   1 (bases 1 to 3021)
            Show all sequences for reference 1
  AUTHORS   Li,L., Chen,L., Yang,S., Li,T., Li,J., Liu,Y., Jia,L., Yang,B.,
	    Bao,Z., Li,H., Wang,X., Zhuang,D. and Liu,S.
  TITLE     Recombination Form and Epidemiology of HIV-1 Unique Recombinant
	    Strains Identified in Yunnan, China
  JOURNAL   PLoS ONE 7 (10), E46777 (2012)
  PUBMED    23056447
REFERENCE   2 (bases 1 to 3021)
            Show all sequences for reference 2
  AUTHORS   Li,L., Chen,L., Yang,S., Li,T., Li,J., Liu,Y., Yang,B., Bao,Z.,
	    Li,H., Wang,X., Zhuang,D. and Liu,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2012) Department of AIDS Research, Beijing
	    Institute of Microbiology and Epidemiology, 20 Dongda Street,
	    Fengtai District, Beijing 100071, China
FEATURES             Location/Qualifiers
     source	     1..3021
		     /organism="Human immunodeficiency virus"
		     /proviral="Human immunodeficiency virus"
		     /mol_type="genomic DNA"
		     /isolate="801"
		     /host="Homo sapiens"
		     /db_xref="taxon:12721"
		     /country="China"
		     /collection_date="2009"
     CDS	     <1..3021
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AFV74189.1"
		     /db_xref="GI:410585816"
		     /translation="FFRENLAFQQGKAGKFSSEQTRTNSPTSRELEDGGRDNLLTKAG
		     AERQGTSSSFSFPQITLWQRPVVTVKIGGQLREALLDTGADDTVIEDINLPGKWKPPK
		     MIGGIGGFIKKVKQYDQVSIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKELCKLIRGTKALTEII
		     PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGLGQWTYQIYQEPYKNLKT
		     GKYARVRGAHTNDVKQLTEAVHKIATESIVIWGKTPKFKLPIQKETWEAWWTEYWQAT
		     WIPEWEFVNTPPLVKLWYQLEKDPIVGAETFYVDGAASRETKLGKAGYVTDRGRQKVV
		     SLTETTNQKTELHAIHLALQDSGSEVNIVTDSQYALGIIQAQPDRSESKVVNQIIEEL
		     IKKEKVYHLSWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEDHERYHSNWRTM
		     ASDFNLPPIVAKEIVANCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVA
		     SGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSNFTSTAVKAACWWANVKQE
		     FGIPYNPQSQGVVESINKELKKIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSA
		     GERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPIWKGPAKLLWKGEGAVVIQDN
		     SDIKVVPRRKAKIIRDYGKQMAGDDCVAGRQDED"
BASE COUNT     1184 a	 502 c	  689 g    644 t      2 other
ORIGIN
       1 ttttttaggg agaatttggc cttccaacaa gggaaggccg ggaaattttc ctcagagcag 
      61 accagaacca acagccccac cagcagagaa ctggaggatg gaggaagaga taacctcctt 
     121 accaaagcag gagcagaaag acaaggaaca tcctcctcct ttagtttccc tcaaatcact 
     181 ctttggcaac gaccagttgt cacagtaaaa ataggaggac agctgagaga agctctatta 
     241 gatacaggag cagatgatac agtaattgaa gatataaatt tgccaggaaa atggaaacca 
     301 ccaaagatga tagggggaat tggaggtttt atcaagaagg taaagcaata tgatcaggta 
     361 tctatagaaa tttgtggaaa aaaggctata ggtacagtat tagtaggacc tacacctgtc 
     421 aacataattg gacgaaatat gttgacccag attggttgca ctttaaattt cccaattagt 
     481 cctattgaaa ctgtaccagt aaaattaaag ccaggaatgg atggcccaaa agttaaacaa 
     541 tggccattga cagaagaaaa aataaaagca ttagtagaaa tttgtacaga aatggagaag 
     601 gaagggaaaa tttcaaaaat tgggcctgaa aatccataca atactccagt atttgctata 
     661 aagaaaaagg acagcaccaa atggagaaaa ttagtagatt tcagggagct taataaaaga 
     721 acacaggact tctgggaagt tcaattagga ataccacatc ccgcagggtt aaaaaagaaa 
     781 aaatctgtaa cagttttgga tgtgggtgat gcatatttct cagttccttt agataaagac 
     841 ttcaggaagt atactgcatt caccatacct agtgtaaaca atgagacacc agggattaga 
     901 tatcaataca atgtgcttcc gcagggatgg aaaggatcac cagcaatatt ccaatgtagc 
     961 atgacaaaaa tcttagagcc ttttagaaaa caaaatccag acatagttat ctatcaatac 
    1021 atggatgatt tgtatgtagg atccgactta gaaataggac agcatagaac aaaaatagag 
    1081 gaactgagac aacatctgtt gaagtgggga tttactacac cagacaaaaa acatcagaaa 
    1141 gaacctccat tcctttggat gggttatgaa ctccatcctg ataaatggac agtacagcct 
    1201 ataatactgc cagaaaaaga cagctggact gtcaatgaca tacagaagtt agtgggaaag 
    1261 ttaaattggg caagtcagat ttatgcaggg attaaggtaa aggaattatg taaactcatt 
    1321 aggggaacca aagcactaac agaaataata ccactaacag aagaggcaga gctagaactg 
    1381 gcagaaaaca gggaaattct gaaagaacca gtacatggag trtattatga cccatcaaaa 
    1441 gacttaatag cagaaataca gaagcagggg ctaggccaat ggacatacca aatttatcaa 
    1501 gagccatata aaaatctgaa aacaggaaag tatgcaagag tgaggggtgc ccacactaat 
    1561 gatgtaaaac aattgacaga ggcagtgcac aaaatagcca cagaaagcat agtaatatgg 
    1621 gggaagactc ctaaatttaa actacccata caaaaagaaa catgggaagc ctggtggaca 
    1681 gagtattggc aggcyacctg gattcctgaa tgggagtttg tcaatacccc tcctctagta 
    1741 aaattatggt accaattaga aaaagacccc atagtaggag cagaaacttt ctatgtagat 
    1801 ggggcggcta gtagggagac taagctagga aaagcaggat atgtcactga cagaggaaga 
    1861 caaaaggtag tttccctaac tgagacaaca aatcaaaaaa ctgaattaca cgcgatccat 
    1921 ttagccttgc aggattcagg atcagaagta aatatagtaa cagactcaca atatgcatta 
    1981 ggaatcattc aggcgcaacc agacaggagt gaatcaaaag tagtcaacca aataatagag 
    2041 gagctaataa aaaaggaaaa agtctaccac ctgtcatggg taccagcaca taaggggatt 
    2101 ggaggaaatg aacaagtaga taaattagtc agttcaggaa tcagaaaggt actattttta 
    2161 gatgggatag ataaggctca agaagaccat gaaagatatc acagcaattg gagaacaatg 
    2221 gctagtgatt ttaatttgcc acctatagta gcaaaggaaa tagtagccaa ctgtgataaa 
    2281 tgtcaactaa aaggggaagc tatgcatgga caagtggact gtagtccagg gatatggcaa 
    2341 ttagattgca cacatctaga aggaaaagtc atcctggtag cagtccacgt ggccagtgga 
    2401 tatatagaag cagaagttat cccagcagaa acaggacagg agacagcata ctttctgcta 
    2461 aaattagcag gaagatggcc agtaaaagta atacacacag acaacggtag caatttcacc 
    2521 agcactgcag ttaaagcagc ctgttggtgg gccaatgtca aacaggaatt tgggatcccc 
    2581 tacaatcccc aaagtcaagg agtagtagaa tctataaata aggaattaaa gaaaatcata 
    2641 ggacaggtaa gagagcaagc tgaacacctt aagacagcag tacaaatggc agtattcatt 
    2701 cacaatttta aaagaaaagg ggggattggg gggtacagtg caggagaaag aatagtagac 
    2761 ataatagcaa cagacataca aactagagaa ttacaaaagc aaattacaaa aattcaaaat 
    2821 tttcgggttt attacaggga cagcagagac ccaatttgga aaggaccagc aaaactactc 
    2881 tggaaaggtg aaggggcagt agtaatacaa gacaatagtg atataaaagt agtaccaaga 
    2941 agaaaagcaa agatcattag agattatgga aaacagatgg caggtgatga ttgtgtggca 
    3001 ggtagacagg atgaggatta g
//
last modified: Tue May 31 10:56 2022


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