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LOCUS JQ898245 3021 bp DNA linear VRL 07-NOV-2012
DEFINITION Human immunodeficiency virus isolate 801 pol protein gene, partial
cds
ACCESSION JQ898245
VERSION JQ898245.1 GI:410585815
KEYWORDS .
SOURCE Human immunodeficiency virus
ORGANISM Human immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group; unclassified Primate lentivirus group
REFERENCE 1 (bases 1 to 3021)
Show all sequences for reference 1
AUTHORS Li,L., Chen,L., Yang,S., Li,T., Li,J., Liu,Y., Jia,L., Yang,B.,
Bao,Z., Li,H., Wang,X., Zhuang,D. and Liu,S.
TITLE Recombination Form and Epidemiology of HIV-1 Unique Recombinant
Strains Identified in Yunnan, China
JOURNAL PLoS ONE 7 (10), E46777 (2012)
PUBMED 23056447
REFERENCE 2 (bases 1 to 3021)
Show all sequences for reference 2
AUTHORS Li,L., Chen,L., Yang,S., Li,T., Li,J., Liu,Y., Yang,B., Bao,Z.,
Li,H., Wang,X., Zhuang,D. and Liu,S.
TITLE Direct Submission
JOURNAL Submitted (04-APR-2012) Department of AIDS Research, Beijing
Institute of Microbiology and Epidemiology, 20 Dongda Street,
Fengtai District, Beijing 100071, China
FEATURES Location/Qualifiers
source 1..3021
/organism="Human immunodeficiency virus"
/proviral="Human immunodeficiency virus"
/mol_type="genomic DNA"
/isolate="801"
/host="Homo sapiens"
/db_xref="taxon:12721"
/country="China"
/collection_date="2009"
CDS <1..3021
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AFV74189.1"
/db_xref="GI:410585816"
/translation="FFRENLAFQQGKAGKFSSEQTRTNSPTSRELEDGGRDNLLTKAG
AERQGTSSSFSFPQITLWQRPVVTVKIGGQLREALLDTGADDTVIEDINLPGKWKPPK
MIGGIGGFIKKVKQYDQVSIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPD
IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKELCKLIRGTKALTEII
PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGLGQWTYQIYQEPYKNLKT
GKYARVRGAHTNDVKQLTEAVHKIATESIVIWGKTPKFKLPIQKETWEAWWTEYWQAT
WIPEWEFVNTPPLVKLWYQLEKDPIVGAETFYVDGAASRETKLGKAGYVTDRGRQKVV
SLTETTNQKTELHAIHLALQDSGSEVNIVTDSQYALGIIQAQPDRSESKVVNQIIEEL
IKKEKVYHLSWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEDHERYHSNWRTM
ASDFNLPPIVAKEIVANCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVA
SGYIEAEVIPAETGQETAYFLLKLAGRWPVKVIHTDNGSNFTSTAVKAACWWANVKQE
FGIPYNPQSQGVVESINKELKKIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSA
GERIVDIIATDIQTRELQKQITKIQNFRVYYRDSRDPIWKGPAKLLWKGEGAVVIQDN
SDIKVVPRRKAKIIRDYGKQMAGDDCVAGRQDED"
BASE COUNT 1184 a 502 c 689 g 644 t 2 other
ORIGIN
1 ttttttaggg agaatttggc cttccaacaa gggaaggccg ggaaattttc ctcagagcag
61 accagaacca acagccccac cagcagagaa ctggaggatg gaggaagaga taacctcctt
121 accaaagcag gagcagaaag acaaggaaca tcctcctcct ttagtttccc tcaaatcact
181 ctttggcaac gaccagttgt cacagtaaaa ataggaggac agctgagaga agctctatta
241 gatacaggag cagatgatac agtaattgaa gatataaatt tgccaggaaa atggaaacca
301 ccaaagatga tagggggaat tggaggtttt atcaagaagg taaagcaata tgatcaggta
361 tctatagaaa tttgtggaaa aaaggctata ggtacagtat tagtaggacc tacacctgtc
421 aacataattg gacgaaatat gttgacccag attggttgca ctttaaattt cccaattagt
481 cctattgaaa ctgtaccagt aaaattaaag ccaggaatgg atggcccaaa agttaaacaa
541 tggccattga cagaagaaaa aataaaagca ttagtagaaa tttgtacaga aatggagaag
601 gaagggaaaa tttcaaaaat tgggcctgaa aatccataca atactccagt atttgctata
661 aagaaaaagg acagcaccaa atggagaaaa ttagtagatt tcagggagct taataaaaga
721 acacaggact tctgggaagt tcaattagga ataccacatc ccgcagggtt aaaaaagaaa
781 aaatctgtaa cagttttgga tgtgggtgat gcatatttct cagttccttt agataaagac
841 ttcaggaagt atactgcatt caccatacct agtgtaaaca atgagacacc agggattaga
901 tatcaataca atgtgcttcc gcagggatgg aaaggatcac cagcaatatt ccaatgtagc
961 atgacaaaaa tcttagagcc ttttagaaaa caaaatccag acatagttat ctatcaatac
1021 atggatgatt tgtatgtagg atccgactta gaaataggac agcatagaac aaaaatagag
1081 gaactgagac aacatctgtt gaagtgggga tttactacac cagacaaaaa acatcagaaa
1141 gaacctccat tcctttggat gggttatgaa ctccatcctg ataaatggac agtacagcct
1201 ataatactgc cagaaaaaga cagctggact gtcaatgaca tacagaagtt agtgggaaag
1261 ttaaattggg caagtcagat ttatgcaggg attaaggtaa aggaattatg taaactcatt
1321 aggggaacca aagcactaac agaaataata ccactaacag aagaggcaga gctagaactg
1381 gcagaaaaca gggaaattct gaaagaacca gtacatggag trtattatga cccatcaaaa
1441 gacttaatag cagaaataca gaagcagggg ctaggccaat ggacatacca aatttatcaa
1501 gagccatata aaaatctgaa aacaggaaag tatgcaagag tgaggggtgc ccacactaat
1561 gatgtaaaac aattgacaga ggcagtgcac aaaatagcca cagaaagcat agtaatatgg
1621 gggaagactc ctaaatttaa actacccata caaaaagaaa catgggaagc ctggtggaca
1681 gagtattggc aggcyacctg gattcctgaa tgggagtttg tcaatacccc tcctctagta
1741 aaattatggt accaattaga aaaagacccc atagtaggag cagaaacttt ctatgtagat
1801 ggggcggcta gtagggagac taagctagga aaagcaggat atgtcactga cagaggaaga
1861 caaaaggtag tttccctaac tgagacaaca aatcaaaaaa ctgaattaca cgcgatccat
1921 ttagccttgc aggattcagg atcagaagta aatatagtaa cagactcaca atatgcatta
1981 ggaatcattc aggcgcaacc agacaggagt gaatcaaaag tagtcaacca aataatagag
2041 gagctaataa aaaaggaaaa agtctaccac ctgtcatggg taccagcaca taaggggatt
2101 ggaggaaatg aacaagtaga taaattagtc agttcaggaa tcagaaaggt actattttta
2161 gatgggatag ataaggctca agaagaccat gaaagatatc acagcaattg gagaacaatg
2221 gctagtgatt ttaatttgcc acctatagta gcaaaggaaa tagtagccaa ctgtgataaa
2281 tgtcaactaa aaggggaagc tatgcatgga caagtggact gtagtccagg gatatggcaa
2341 ttagattgca cacatctaga aggaaaagtc atcctggtag cagtccacgt ggccagtgga
2401 tatatagaag cagaagttat cccagcagaa acaggacagg agacagcata ctttctgcta
2461 aaattagcag gaagatggcc agtaaaagta atacacacag acaacggtag caatttcacc
2521 agcactgcag ttaaagcagc ctgttggtgg gccaatgtca aacaggaatt tgggatcccc
2581 tacaatcccc aaagtcaagg agtagtagaa tctataaata aggaattaaa gaaaatcata
2641 ggacaggtaa gagagcaagc tgaacacctt aagacagcag tacaaatggc agtattcatt
2701 cacaatttta aaagaaaagg ggggattggg gggtacagtg caggagaaag aatagtagac
2761 ataatagcaa cagacataca aactagagaa ttacaaaagc aaattacaaa aattcaaaat
2821 tttcgggttt attacaggga cagcagagac ccaatttgga aaggaccagc aaaactactc
2881 tggaaaggtg aaggggcagt agtaatacaa gacaatagtg atataaaagt agtaccaaga
2941 agaaaagcaa agatcattag agattatgga aaacagatgg caggtgatga ttgtgtggca
3001 ggtagacagg atgaggatta g
//
last modified: Tue May 31 10:56 2022