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HIV Sequence Database



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LOCUS	    JQ898233		    3006 bp    DNA     linear	VRL 07-NOV-2012
DEFINITION  Human immunodeficiency virus isolate 614 pol protein gene, partial
	    cds
ACCESSION   JQ898233
VERSION     JQ898233.1 GI:410585791
KEYWORDS    .
SOURCE	    Human immunodeficiency virus
  ORGANISM  Human immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group; unclassified Primate lentivirus group
REFERENCE   1 (bases 1 to 3006)
            Show all sequences for reference 1
  AUTHORS   Li,L., Chen,L., Yang,S., Li,T., Li,J., Liu,Y., Jia,L., Yang,B.,
	    Bao,Z., Li,H., Wang,X., Zhuang,D. and Liu,S.
  TITLE     Recombination Form and Epidemiology of HIV-1 Unique Recombinant
	    Strains Identified in Yunnan, China
  JOURNAL   PLoS ONE 7 (10), E46777 (2012)
  PUBMED    23056447
REFERENCE   2 (bases 1 to 3006)
            Show all sequences for reference 2
  AUTHORS   Li,L., Chen,L., Yang,S., Li,T., Li,J., Liu,Y., Yang,B., Bao,Z.,
	    Li,H., Wang,X., Zhuang,D. and Liu,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2012) Department of AIDS Research, Beijing
	    Institute of Microbiology and Epidemiology, 20 Dongda Street,
	    Fengtai District, Beijing 100071, China
FEATURES             Location/Qualifiers
     source	     1..3006
		     /organism="Human immunodeficiency virus"
		     /proviral="Human immunodeficiency virus"
		     /mol_type="genomic DNA"
		     /isolate="614"
		     /host="Homo sapiens"
		     /db_xref="taxon:12721"
		     /country="China"
		     /collection_date="2009"
     CDS	     <1..3006
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AFV74177.1"
		     /db_xref="GI:410585792"
		     /translation="FFRENLAFPQGEAREFSPESTRANSPTSRELQVRGDDSSSEAGA
		     DRQGTISLNFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIG
		     GIGGFIKVRQYEQIPVEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPISPIET
		     VPVKLKPGMDGPKVKQWPLTEEKIKALTAICDEMEKEGKITKIGPENPYNTPIFAIKK
		     KDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKD
		     FRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIY
		     QYMDDLYVGSDLEIGQHRTKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKW
		     TVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTDIVPLTE
		     EAELELAENREILKEPVHGVYYDPSKELIAEIQKQGNDQWTYQIYQEPFKNLKTGKYA
		     KMRTAHTNDVKQLTEAVQKIATESIIIWGKIPKFRLPIQKETWETWWTDYWQATWIPE
		     WEFVNTPPLVKLWYQLEKDPIAGAETFYVDGAANRETKIGKAGYVTDRGRRKIVSLTE
		     TTNQKTELQAICIALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKE
		     RVYLSWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFN
		     LPPIVAKEIVASCDQCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYME
		     AEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSNFTSNTVKAACWWAGIRQEFGIPY
		     NPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIV
		     DIIATDIQTRELQKQIIKIQNFRVYYRDSRDPIWKGPAKLLWKGEGAVVIQDNSDIKV
		     VPRRKAKIIKDYGKQMAGADCVAGRQDED"
BASE COUNT     1174 a	 493 c	  679 g    660 t
ORIGIN
       1 ttttttaggg aaaatttggc cttcccacaa ggggaggcca gggaattttc tccagagtcg 
      61 accagagcca acagccccac cagcagagag cttcaggttc gaggagacga ctccagctca 
     121 gaagcaggag ccgatagaca aggaactata tcccttaact tccctcaaat cactctttgg 
     181 caacgacccc tcgtcacaat aaagataggg gggcaattaa aggaagctct attagataca 
     241 ggagcagatg atacagtatt agaagaaatg aatttgccag ggaaatggaa accaaaaatg 
     301 atagggggaa ttggaggttt tatcaaagta agacaatatg aacagatacc tgtagaaata 
     361 tgtggacaca aagctatagg tacagtatta gtaggaccta cacctgtcaa cataattggc 
     421 agaaatctgt tgactcagct tggttgcact ttaaattttc caatcagtcc tattgaaact 
     481 gtaccagtaa aattaaagcc aggaatggat ggcccaaagg ttaaacaatg gccattgaca 
     541 gaagagaaaa taaaagcatt aacagcaatt tgtgatgaaa tggagaagga aggaaaaatt 
     601 acaaaaattg ggcctgaaaa tccatataac accccaatat ttgccataaa aaagaaggac 
     661 agtactaagt ggagaaaatt agtagatttc agggaactca ataaaagaac tcaagatttt 
     721 tgggaggttc aattaggaat accacaccca gcagggttaa aaaagaaaaa atcagtaaca 
     781 gtcctggatg tgggtgatgc atatttctca gttcctttag ataaagactt taggaagtat 
     841 actgcattta ccatacctag tgtaaacaat gagacaccag ggattagata tcagtacaat 
     901 gtgcttccac agggatggaa aggatcacca gcaatattcc aatgtagcat gacaaaaatc 
     961 ttagagcctt ttagaaaaca aaacccagac atagttatct atcaatacat ggatgacttg 
    1021 tatgtaggat ctgatttgga aatagggcag catagaacaa aaatagagga actgagagaa 
    1081 catctgttaa agtggggatt caccacacca gacaagaagc atcagaaaga acctccattt 
    1141 ctttggatgg ggtatgaact tcatcctgac aaatggacag tacagcctat acagctgcca 
    1201 gaaaaggata gctggactgt caatgatata cagaagttag taggaaaatt aaactgggca 
    1261 agtcagattt atcctggaat taaagtaagg caactttgta aactccttag ggggaccaaa 
    1321 gcactaacag acatagtacc actaactgaa gaagcagaat tagaactggc agaaaacagg 
    1381 gaaattctaa aagaaccagt acatggagta tattatgacc catcaaaaga attgatagct 
    1441 gaaatacaga aacagggaaa tgaccaatgg acatatcaaa tttaccaaga accattcaaa 
    1501 aatctaaaaa cagggaagta tgcaaaaatg aggactgccc acactaatga tgtaaaacag 
    1561 ttaacagagg ctgtgcaaaa aatagccacg gaaagcataa taatatgggg aaagatccct 
    1621 aaatttagat taccaatcca aaaagaaaca tgggagacat ggtggacaga ctattggcaa 
    1681 gccacctgga ttcctgagtg ggaatttgtt aatacccctc ccttagtaaa attatggtac 
    1741 cagctggaaa aagatcccat agcaggagca gaaacttttt atgtagatgg agcagctaat 
    1801 agggagacta aaataggaaa agcagggtat gttactgaca gaggaaggag gaaaattgtt 
    1861 tctctaactg aaacaacaaa tcagaagact gaattgcaag caatttgtat agctttgcaa 
    1921 gattcaggat cagaagtaaa catagtaaca gattcacagt atgcattagg gatcattcaa 
    1981 gcacaaccag ataagagtga atcagagtta gttaaccaga taatagaaca attaataaaa 
    2041 aaggaaagag tctacctgtc atgggtacca gcacataaag gaattggagg aaatgaacaa 
    2101 gtagataaat tagtaagtag tggaatcagg aaagtgctat ttctagatgg aatagataaa 
    2161 gctcaagaag agcatgaaaa atatcacagc aattggagag caatggctag tgactttaat 
    2221 ctgccaccca tagtagcaaa agaaatagta gctagctgtg atcaatgtca gttaaaaggg 
    2281 gaagccatgc atggacaagt ggactgtagt ccagggatat ggcaattaga ttgtacacat 
    2341 ttagaaggaa aaatcatcct ggtagcagtt catgtagcca gtggctacat ggaagcagag 
    2401 gttattccag cagaaacagg acaagagaca gcatacttta tactaaaatt agcaggaaga 
    2461 tggccagtca aagtaataca tacagacaat ggtagtaatt tcaccagtaa tacagttaag 
    2521 gcagcctgtt ggtgggcagg tatccgacag gaatttggaa ttccctacaa tccccaaagt 
    2581 cagggagtag tagaatccat gaataaagaa ttaaagaaaa ttatagggca ggtaagagat 
    2641 caagctgagc accttaagac agcagtacaa atggcagtat tcattcacaa ttttaaaaga 
    2701 aaagggggga ttggggggta cagtgcaggg gaaagaatag tagacataat agcaacagac 
    2761 atacaaacta gagaattaca aaaacaaatt ataaaaattc aaaattttcg ggtttattac 
    2821 agagacagca gagaccccat ttggaaagga ccagccaaac tactctggaa aggtgaaggg 
    2881 gcagtagtaa tacaagataa tagtgacata aaggtagtac caaggaggaa agcaaaaatc 
    2941 ataaaggact atggaaaaca gatggcaggt gctgattgtg tggcaggtag acaggatgaa 
    3001 gattag
//
last modified: Tue May 31 10:56 2022


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