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LOCUS JQ898233 3006 bp DNA linear VRL 07-NOV-2012
DEFINITION Human immunodeficiency virus isolate 614 pol protein gene, partial
cds
ACCESSION JQ898233
VERSION JQ898233.1 GI:410585791
KEYWORDS .
SOURCE Human immunodeficiency virus
ORGANISM Human immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group; unclassified Primate lentivirus group
REFERENCE 1 (bases 1 to 3006)
Show all sequences for reference 1
AUTHORS Li,L., Chen,L., Yang,S., Li,T., Li,J., Liu,Y., Jia,L., Yang,B.,
Bao,Z., Li,H., Wang,X., Zhuang,D. and Liu,S.
TITLE Recombination Form and Epidemiology of HIV-1 Unique Recombinant
Strains Identified in Yunnan, China
JOURNAL PLoS ONE 7 (10), E46777 (2012)
PUBMED 23056447
REFERENCE 2 (bases 1 to 3006)
Show all sequences for reference 2
AUTHORS Li,L., Chen,L., Yang,S., Li,T., Li,J., Liu,Y., Yang,B., Bao,Z.,
Li,H., Wang,X., Zhuang,D. and Liu,S.
TITLE Direct Submission
JOURNAL Submitted (04-APR-2012) Department of AIDS Research, Beijing
Institute of Microbiology and Epidemiology, 20 Dongda Street,
Fengtai District, Beijing 100071, China
FEATURES Location/Qualifiers
source 1..3006
/organism="Human immunodeficiency virus"
/proviral="Human immunodeficiency virus"
/mol_type="genomic DNA"
/isolate="614"
/host="Homo sapiens"
/db_xref="taxon:12721"
/country="China"
/collection_date="2009"
CDS <1..3006
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AFV74177.1"
/db_xref="GI:410585792"
/translation="FFRENLAFPQGEAREFSPESTRANSPTSRELQVRGDDSSSEAGA
DRQGTISLNFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIG
GIGGFIKVRQYEQIPVEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPISPIET
VPVKLKPGMDGPKVKQWPLTEEKIKALTAICDEMEKEGKITKIGPENPYNTPIFAIKK
KDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKD
FRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIY
QYMDDLYVGSDLEIGQHRTKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKW
TVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTDIVPLTE
EAELELAENREILKEPVHGVYYDPSKELIAEIQKQGNDQWTYQIYQEPFKNLKTGKYA
KMRTAHTNDVKQLTEAVQKIATESIIIWGKIPKFRLPIQKETWETWWTDYWQATWIPE
WEFVNTPPLVKLWYQLEKDPIAGAETFYVDGAANRETKIGKAGYVTDRGRRKIVSLTE
TTNQKTELQAICIALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKE
RVYLSWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFN
LPPIVAKEIVASCDQCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYME
AEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSNFTSNTVKAACWWAGIRQEFGIPY
NPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIV
DIIATDIQTRELQKQIIKIQNFRVYYRDSRDPIWKGPAKLLWKGEGAVVIQDNSDIKV
VPRRKAKIIKDYGKQMAGADCVAGRQDED"
BASE COUNT 1174 a 493 c 679 g 660 t
ORIGIN
1 ttttttaggg aaaatttggc cttcccacaa ggggaggcca gggaattttc tccagagtcg
61 accagagcca acagccccac cagcagagag cttcaggttc gaggagacga ctccagctca
121 gaagcaggag ccgatagaca aggaactata tcccttaact tccctcaaat cactctttgg
181 caacgacccc tcgtcacaat aaagataggg gggcaattaa aggaagctct attagataca
241 ggagcagatg atacagtatt agaagaaatg aatttgccag ggaaatggaa accaaaaatg
301 atagggggaa ttggaggttt tatcaaagta agacaatatg aacagatacc tgtagaaata
361 tgtggacaca aagctatagg tacagtatta gtaggaccta cacctgtcaa cataattggc
421 agaaatctgt tgactcagct tggttgcact ttaaattttc caatcagtcc tattgaaact
481 gtaccagtaa aattaaagcc aggaatggat ggcccaaagg ttaaacaatg gccattgaca
541 gaagagaaaa taaaagcatt aacagcaatt tgtgatgaaa tggagaagga aggaaaaatt
601 acaaaaattg ggcctgaaaa tccatataac accccaatat ttgccataaa aaagaaggac
661 agtactaagt ggagaaaatt agtagatttc agggaactca ataaaagaac tcaagatttt
721 tgggaggttc aattaggaat accacaccca gcagggttaa aaaagaaaaa atcagtaaca
781 gtcctggatg tgggtgatgc atatttctca gttcctttag ataaagactt taggaagtat
841 actgcattta ccatacctag tgtaaacaat gagacaccag ggattagata tcagtacaat
901 gtgcttccac agggatggaa aggatcacca gcaatattcc aatgtagcat gacaaaaatc
961 ttagagcctt ttagaaaaca aaacccagac atagttatct atcaatacat ggatgacttg
1021 tatgtaggat ctgatttgga aatagggcag catagaacaa aaatagagga actgagagaa
1081 catctgttaa agtggggatt caccacacca gacaagaagc atcagaaaga acctccattt
1141 ctttggatgg ggtatgaact tcatcctgac aaatggacag tacagcctat acagctgcca
1201 gaaaaggata gctggactgt caatgatata cagaagttag taggaaaatt aaactgggca
1261 agtcagattt atcctggaat taaagtaagg caactttgta aactccttag ggggaccaaa
1321 gcactaacag acatagtacc actaactgaa gaagcagaat tagaactggc agaaaacagg
1381 gaaattctaa aagaaccagt acatggagta tattatgacc catcaaaaga attgatagct
1441 gaaatacaga aacagggaaa tgaccaatgg acatatcaaa tttaccaaga accattcaaa
1501 aatctaaaaa cagggaagta tgcaaaaatg aggactgccc acactaatga tgtaaaacag
1561 ttaacagagg ctgtgcaaaa aatagccacg gaaagcataa taatatgggg aaagatccct
1621 aaatttagat taccaatcca aaaagaaaca tgggagacat ggtggacaga ctattggcaa
1681 gccacctgga ttcctgagtg ggaatttgtt aatacccctc ccttagtaaa attatggtac
1741 cagctggaaa aagatcccat agcaggagca gaaacttttt atgtagatgg agcagctaat
1801 agggagacta aaataggaaa agcagggtat gttactgaca gaggaaggag gaaaattgtt
1861 tctctaactg aaacaacaaa tcagaagact gaattgcaag caatttgtat agctttgcaa
1921 gattcaggat cagaagtaaa catagtaaca gattcacagt atgcattagg gatcattcaa
1981 gcacaaccag ataagagtga atcagagtta gttaaccaga taatagaaca attaataaaa
2041 aaggaaagag tctacctgtc atgggtacca gcacataaag gaattggagg aaatgaacaa
2101 gtagataaat tagtaagtag tggaatcagg aaagtgctat ttctagatgg aatagataaa
2161 gctcaagaag agcatgaaaa atatcacagc aattggagag caatggctag tgactttaat
2221 ctgccaccca tagtagcaaa agaaatagta gctagctgtg atcaatgtca gttaaaaggg
2281 gaagccatgc atggacaagt ggactgtagt ccagggatat ggcaattaga ttgtacacat
2341 ttagaaggaa aaatcatcct ggtagcagtt catgtagcca gtggctacat ggaagcagag
2401 gttattccag cagaaacagg acaagagaca gcatacttta tactaaaatt agcaggaaga
2461 tggccagtca aagtaataca tacagacaat ggtagtaatt tcaccagtaa tacagttaag
2521 gcagcctgtt ggtgggcagg tatccgacag gaatttggaa ttccctacaa tccccaaagt
2581 cagggagtag tagaatccat gaataaagaa ttaaagaaaa ttatagggca ggtaagagat
2641 caagctgagc accttaagac agcagtacaa atggcagtat tcattcacaa ttttaaaaga
2701 aaagggggga ttggggggta cagtgcaggg gaaagaatag tagacataat agcaacagac
2761 atacaaacta gagaattaca aaaacaaatt ataaaaattc aaaattttcg ggtttattac
2821 agagacagca gagaccccat ttggaaagga ccagccaaac tactctggaa aggtgaaggg
2881 gcagtagtaa tacaagataa tagtgacata aaggtagtac caaggaggaa agcaaaaatc
2941 ataaaggact atggaaaaca gatggcaggt gctgattgtg tggcaggtag acaggatgaa
3001 gattag
//
last modified: Tue May 31 10:56 2022