HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    JQ898227		    3018 bp    DNA     linear	VRL 07-NOV-2012
DEFINITION  Human immunodeficiency virus isolate 506 pol protein gene, partial
	    cds
ACCESSION   JQ898227
VERSION     JQ898227.1 GI:410585779
KEYWORDS    .
SOURCE	    Human immunodeficiency virus
  ORGANISM  Human immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group; unclassified Primate lentivirus group
REFERENCE   1 (bases 1 to 3018)
            Show all sequences for reference 1
  AUTHORS   Li,L., Chen,L., Yang,S., Li,T., Li,J., Liu,Y., Jia,L., Yang,B.,
	    Bao,Z., Li,H., Wang,X., Zhuang,D. and Liu,S.
  TITLE     Recombination Form and Epidemiology of HIV-1 Unique Recombinant
	    Strains Identified in Yunnan, China
  JOURNAL   PLoS ONE 7 (10), E46777 (2012)
  PUBMED    23056447
REFERENCE   2 (bases 1 to 3018)
            Show all sequences for reference 2
  AUTHORS   Li,L., Chen,L., Yang,S., Li,T., Li,J., Liu,Y., Yang,B., Bao,Z.,
	    Li,H., Wang,X., Zhuang,D. and Liu,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2012) Department of AIDS Research, Beijing
	    Institute of Microbiology and Epidemiology, 20 Dongda Street,
	    Fengtai District, Beijing 100071, China
FEATURES             Location/Qualifiers
     source	     1..3018
		     /organism="Human immunodeficiency virus"
		     /proviral="Human immunodeficiency virus"
		     /mol_type="genomic DNA"
		     /isolate="506"
		     /host="Homo sapiens"
		     /db_xref="taxon:12721"
		     /country="China"
		     /collection_date="2009"
     CDS	     <1..3018
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AFV74171.1"
		     /db_xref="GI:410585780"
		     /translation="FFRENLALPQGKAREFSSEQTRANSPTTTSRELQVWGGDSNPIX
		     EAGADRQGALSFNLPQITLWQRPLVTIKIGGQLXEALLDTGADDTVLEEMNLPGKWKP
		     KMIGGIGGFIKVRQYEQIPIEICGXKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICDEMEKEGKIXKIGPDNPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSVNNATPGVRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEIV
		     PLTEEAELELAENREILKEPVHGAYYDPSKELIAEIQKQGQDQWTYQIYQEPFKNLKT
		     GKYARMRTAHTNDVRQLTEAVQKIAMESIVIWGKIPKFRLPIQKETWETWWTDYWQAT
		     WIPEWEFVNTPPLVKLWYQLEKDPIAGVETFYVDGAANRETKIGKAGYVTDRGRQKIV
		     SLTETTNQKTELQAIYIALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL
		     IXKERVYLSWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEDHERYHSNWRAMA
		     SDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVAS
		     GYMEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSNFTSAAVKAACWWADIQQEF
		     GIPYNPQSQGVVESMNKELKKIVGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAG
		     ERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAKLLWKGEGAVVIQDNS
		     DIKVVPRRKAKIIKDYGKQMAGADCVAGRQDED"
BASE COUNT     1165 a	 505 c	  685 g    646 t     17 other
ORIGIN
       1 ttttttaggg aaaatctggc cctcccacaa gggaaggcca gggaattttc ttcagagcag 
      61 accagagcca acagccccac caccaccagc agagagcttc aggtttgggg aggagacagc 
     121 aaccccatcy cagaagcagg agcagacaga caaggagctc tatcctttaa cctccctcag 
     181 atcactcttt ggcagcgacc cctcgtcaca ataaagatag gggggcaayt aaawgaagct 
     241 ctattagata caggagcaga tgatacagta ttagaagaaa tgaatttgcc agggaaatgg 
     301 aaaccaaaaa tgataggggg aattggaggt tttatcaaag taagacagta tgaacagata 
     361 cccatagaaa tytgtggasm caaagctata ggtacagtat tagtgggacc tacacctgtc 
     421 aacataattg gaagaaatct gttgactcaa cttggttgca ctttaaattt tccaatcagt 
     481 cccattgaaa ctgtaccagt aaaattaaag ccaggaatgg atggcccaaa ggttaaacaa 
     541 tggccattga cagaagagaa aataaaagca ttaacagaaa tttgtgatga aatggaraag 
     601 gaaggaaaaa ttwcaaaaat tgggcctgac aatccatata acactccaat atttgccata 
     661 aaaaagaagg acagtactaa gtggagaaaa ttagtagatt tcagggaact caataaaaga 
     721 actcaagatt tctgggaggt tcaattagga ataccacacc cagcagggtt raaaaagaaa 
     781 aaatcagtaa cagtcttgga tgtgggtgat gcatatttct cagttccttt agataaagac 
     841 ttcaggaagt atactgcatt taccatacct agtgtaaaca atgcgacacc aggggttaga 
     901 tatcagtaca atgtgctgcc acagggatgg aaaggatcac cagcaatatt ccaatgcagc 
     961 atgacaaaaa tyttagagcc ttttagaaaa caaaatccag acatagttat ctatcaatac 
    1021 atggatgact tgtatgtagg mtctgactta gaaatagggc arcatagagc aaaaatagag 
    1081 gaactgagag aacatctgtt aaagtggggr tttaccacac cagacaagaa acatcagaaa 
    1141 gaacctccat ttctttggat ggggtatgaa ctccatcctg acaaatggac agtacagcct 
    1201 atacagctgc cagaaaagga tagctggact gtcaatgata tacagaagtt agtgggaaaa 
    1261 ttaaactggg caagtcagat ttacccagga attaaagtaa agcaactctg taaactcctt 
    1321 agggggacca aagcactaac agaaatagta ccactaactg aagaagcaga attagaattg 
    1381 gcagaaaaca gggaaatttt aaaagagcca gtacatggag catattatga cccatcaaaa 
    1441 gaattgatag ctgaaataca gaaacaaggg caggaccaat ggacatatca aatttaccaa 
    1501 gaaccattta aaaatctgaa aacaggaaag tatgcaagaa tgaggactgc ccacactaat 
    1561 gatgtaagac agttaacaga ggctgtgcag aaaatagcca tggaaagcat agtaatatgg 
    1621 ggaaaaattc ctaaatttag attaccaaty caaaaagaaa catgggagac atggtggaca 
    1681 gactattggc aagccacctg gattcctgag tgggaatttg ttaatacccc tcccttagta 
    1741 aaattatggt accaaytgga gaaagacccc atagcaggag tagaaacttt ctatgtagat 
    1801 ggagcagcta atagggagac taaaatagga aaagcagggt atgtcactga caggggaaga 
    1861 cagaaaattg tttctctaac tgaaacaaca aatcagaaga ctgaattgca agcaatttat 
    1921 atagctttgc aagattcagg atcagaagta aacatagtaa cagattcaca gtatgcatta 
    1981 gggatcattc aagcacaacc agataagagt gaatcagagt tagtcaayca aataatagaa 
    2041 caattaatam agaaggaaag ggtctacctg tcatgggtac cagcacataa aggaattgga 
    2101 ggaaatgaac aagtagataa attagtaagt agtggaatca ggaaagtgct atttctagat 
    2161 ggaatagata aagctcaaga agaccatgaa aggtatcaca gcaattggag agcaatggct 
    2221 agtgacttta atctgccacc catagtagca aaagaaatag tggctagctg tgataaatgt 
    2281 cagttaaaag gagaagccat gcatggacaa gtagactgta gtccagggat atggcaatta 
    2341 gattgtacac acttagaagg aaaaatcatc ctggtagcag tccatgtagc cagtggctac 
    2401 atggaagcag aggttatccc agcagaaaca ggacaagaga cagcatactt tatactaaaa 
    2461 ttagcaggaa gatggccagt caaagtaata catacagaca atggtagtaa tttcaccagt 
    2521 gctgcagtta aggcagcctg ttggtgggca gatatccaac aggaatttgg aattccctac 
    2581 aatccccaaa gtcagggagt agtagaatcc atgaataaag aattaaagaa aattgtaggg 
    2641 caggtaagag atcaagctga gcaccttaag acagcagtac aaatggcagt attcattcac 
    2701 aattttaaga gaaaaggggg gattgggggg tacagtgcag gggaaagaat aatagatata 
    2761 atagcaacag acatacaaac taaagaatta caaaaacaaa ttacaaaaat tcaaaatttt 
    2821 cgggtttatt acagagacag cagagacccc atttggaaag gaccagccaa actactctgg 
    2881 aaaggtgaag gggcagtagt aatacaagat aatagtgaca taaaggtagt accaaggagg 
    2941 aaagcaaaaa tcattaagga ctatggaaaa cagatggcag gcgctgattg tgtggcaggt 
    3001 agacaggatg aagattag
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health