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LOCUS	    JQ866065		     731 bp    RNA     linear	VRL 12-SEP-2012
DEFINITION  Simian immunodeficiency virus isolate AM213 gp41 envelope
	    transmembrane glycoprotein (env), rev protein (rev), tat protein
	    (tat), and nef protein (nef) genes, partial cds
ACCESSION   JQ866065
VERSION     JQ866065.1 GI:392872236
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 731)
            Show all sequences for reference 1
  AUTHORS   Li,Y., Ndjango,J.B., Learn,G.H., Ramirez,M.A., Keele,B.F.,
	    Bibollet-Ruche,F., Liu,W., Easlick,J.L., Decker,J.M.,
	    Rudicell,R.S., Inogwabini,B.I., Ahuka-Mundeke,S., Leendertz,F.H.,
	    Reynolds,V., Muller,M.N., Chancellor,R.L., Rundus,A.S., Simmons,N.,
	    Worobey,M., Shaw,G.M., Peeters,M., Sharp,P.M. and Hahn,B.H.
  TITLE     Eastern chimpanzees, but not bonobos, represent a simian
	    immunodeficiency virus reservoir
  JOURNAL   J. Virol. 86 (19), 10776-10791 (2012)
  PUBMED    22837215
REFERENCE   2 (bases 1 to 731)
            Show all sequences for reference 2
  AUTHORS   Li,Y., Ndjango,J.-B., Learn,G.H., Keele,B.F., Bibollet-Ruche,F.,
	    Easlick,J., Decker,J.M., Rudicell,R.S., Inogwabini,B.-I.,
	    Ahuka-Mundeke,S., Leendertz,F.H., Reynolds,V., Muller,M.N.,
	    Chancellor,R.L., Rundus,A.S., Simmonds,N., Worobey,M., Shaw,G.M.,
	    Peeters,M., Sharp,P.M. and Hahn,B.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2012) Dept. of Medicine, Perelman School of
	    Medicine, University of Pennsylvania, Johnson Pavilion 423, 3610
	    Hamilton Walk, Philadelphia, PA 19104, USA
COMMENT     ##Assembly-Data-START## Assembly Method Sequencher v. 4 Sequencing
	    Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..731
		     /organism="Simian immunodeficiency virus"
		     /mol_type="genomic RNA"
		     /isolate="AM213"
		     /isolation_source="feces"
		     /host="Pan troglodytes schweinfurthii"
		     /db_xref="taxon:11723"
		     /country="Democratic Republic of the Congo"
		     /collection_date="27-Feb-2005"
     gene	     <1..481
		     /gene="env"
     CDS	     <1..481
		     /gene="env"
		     /codon_start="2"
		     /transl_table="1"
		     /product="gp41 envelope transmembrane glycoprotein"
		     /protein_id="AFM85390.1"
		     /db_xref="GI:392872237"
		     /translation="YSPLFPQIRIPATRGPEAPGETEEGGGDRGRDRWTPSPTGFLSL
		     LWEDLRQLFLWFYRTLALLAWHLWTVIQAVYKGLQHLYQQIPAICRQIQQVHQQLLNS
		     FYNWYMLTRAGLIKQIDRLAEFVGWWTDGILLGLNFVWQGIRNIPRRIRQGLEIALN"
     gene	     <23..306
		     /gene="rev"
     CDS	     <23..306
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AFM85393.1"
		     /db_xref="GI:392872240"
		     /translation="PYPSNQGTRSARRNRRRRWRQRQRQVDSIANRILESTLGGPPAA
		     VPVVLPDISTLSLAPLDSDPGCLQRTAAPLSTDTSNLPPDTTSSSTVAQ"
     gene	     <23..128
		     /gene="tat"
     CDS	     <23..128
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AFM85392.1"
		     /db_xref="GI:392872239"
		     /translation="SVSQQPGDQKRQEKQKKEVETEAETGGLHRQQDS"
     gene	     490..>731
		     /gene="nef"
     CDS	     490..>731
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="AFM85391.1"
		     /db_xref="GI:392872238"
		     /translation="MGGWLAKGFPGANRALRQIKETPADGVGQASLDMAERGGLTTAT
		     INSHHDVAEWSQDHSEEEVGFPVRPQVPLRPMTEKVA"
BASE COUNT	236 a	 159 c	  180 g    156 t
ORIGIN
       1 ctattcacca ctattcccgc agatccgtat cccagcaacc aggggaccag aagcgccagg 
      61 agaaacagaa gaaggaggtg gagacagagg cagagacagg tggactccat cgccaacagg 
     121 attcttgagt ctactctggg aggacctccg gcagctgttc ctgtggtttt accggacatt 
     181 agcactctta gcttggcacc tctggacagt gatccaggct gtctacaaag gactgcagca 
     241 cctctatcaa cagataccag caatttgccg ccagatacaa caagttcatc aacagttgct 
     301 caatagcttc tacaactggt acatgctaac cagagctggc ttaattaaac aaatagatag 
     361 attggcagaa tttgtaggct ggtggacaga cgggattcta ctaggactaa attttgtctg 
     421 gcaaggtatc agaaatatcc ctaggaggat tagacaggga ttagaaatag ccttaaatta 
     481 aaaagaaaaa tgggtggctg gcttgcaaaa ggatttccag gagcaaatag agcactaaga 
     541 cagattaaag aaacaccagc agatggagta ggacaagcct ccctagacat ggcagagaga 
     601 ggtggcttga ccacagccac tataaatagt catcatgatg tagcagaatg gtctcaagat 
     661 cattcagaag aagaagtagg ttttcctgtc aggcctcaag tacctctgag gcctatgaca 
     721 gaaaaagtag c
//
last modified: Tue May 31 10:56 2022


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