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LOCUS JQ866065 731 bp RNA linear VRL 12-SEP-2012
DEFINITION Simian immunodeficiency virus isolate AM213 gp41 envelope
transmembrane glycoprotein (env), rev protein (rev), tat protein
(tat), and nef protein (nef) genes, partial cds
ACCESSION JQ866065
VERSION JQ866065.1 GI:392872236
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 731)
Show all sequences for reference 1
AUTHORS Li,Y., Ndjango,J.B., Learn,G.H., Ramirez,M.A., Keele,B.F.,
Bibollet-Ruche,F., Liu,W., Easlick,J.L., Decker,J.M.,
Rudicell,R.S., Inogwabini,B.I., Ahuka-Mundeke,S., Leendertz,F.H.,
Reynolds,V., Muller,M.N., Chancellor,R.L., Rundus,A.S., Simmons,N.,
Worobey,M., Shaw,G.M., Peeters,M., Sharp,P.M. and Hahn,B.H.
TITLE Eastern chimpanzees, but not bonobos, represent a simian
immunodeficiency virus reservoir
JOURNAL J. Virol. 86 (19), 10776-10791 (2012)
PUBMED 22837215
REFERENCE 2 (bases 1 to 731)
Show all sequences for reference 2
AUTHORS Li,Y., Ndjango,J.-B., Learn,G.H., Keele,B.F., Bibollet-Ruche,F.,
Easlick,J., Decker,J.M., Rudicell,R.S., Inogwabini,B.-I.,
Ahuka-Mundeke,S., Leendertz,F.H., Reynolds,V., Muller,M.N.,
Chancellor,R.L., Rundus,A.S., Simmonds,N., Worobey,M., Shaw,G.M.,
Peeters,M., Sharp,P.M. and Hahn,B.H.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2012) Dept. of Medicine, Perelman School of
Medicine, University of Pennsylvania, Johnson Pavilion 423, 3610
Hamilton Walk, Philadelphia, PA 19104, USA
COMMENT ##Assembly-Data-START## Assembly Method Sequencher v. 4 Sequencing
Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..731
/organism="Simian immunodeficiency virus"
/mol_type="genomic RNA"
/isolate="AM213"
/isolation_source="feces"
/host="Pan troglodytes schweinfurthii"
/db_xref="taxon:11723"
/country="Democratic Republic of the Congo"
/collection_date="27-Feb-2005"
gene <1..481
/gene="env"
CDS <1..481
/gene="env"
/codon_start="2"
/transl_table="1"
/product="gp41 envelope transmembrane glycoprotein"
/protein_id="AFM85390.1"
/db_xref="GI:392872237"
/translation="YSPLFPQIRIPATRGPEAPGETEEGGGDRGRDRWTPSPTGFLSL
LWEDLRQLFLWFYRTLALLAWHLWTVIQAVYKGLQHLYQQIPAICRQIQQVHQQLLNS
FYNWYMLTRAGLIKQIDRLAEFVGWWTDGILLGLNFVWQGIRNIPRRIRQGLEIALN"
gene <23..306
/gene="rev"
CDS <23..306
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="AFM85393.1"
/db_xref="GI:392872240"
/translation="PYPSNQGTRSARRNRRRRWRQRQRQVDSIANRILESTLGGPPAA
VPVVLPDISTLSLAPLDSDPGCLQRTAAPLSTDTSNLPPDTTSSSTVAQ"
gene <23..128
/gene="tat"
CDS <23..128
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="AFM85392.1"
/db_xref="GI:392872239"
/translation="SVSQQPGDQKRQEKQKKEVETEAETGGLHRQQDS"
gene 490..>731
/gene="nef"
CDS 490..>731
/gene="nef"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="AFM85391.1"
/db_xref="GI:392872238"
/translation="MGGWLAKGFPGANRALRQIKETPADGVGQASLDMAERGGLTTAT
INSHHDVAEWSQDHSEEEVGFPVRPQVPLRPMTEKVA"
BASE COUNT 236 a 159 c 180 g 156 t
ORIGIN
1 ctattcacca ctattcccgc agatccgtat cccagcaacc aggggaccag aagcgccagg
61 agaaacagaa gaaggaggtg gagacagagg cagagacagg tggactccat cgccaacagg
121 attcttgagt ctactctggg aggacctccg gcagctgttc ctgtggtttt accggacatt
181 agcactctta gcttggcacc tctggacagt gatccaggct gtctacaaag gactgcagca
241 cctctatcaa cagataccag caatttgccg ccagatacaa caagttcatc aacagttgct
301 caatagcttc tacaactggt acatgctaac cagagctggc ttaattaaac aaatagatag
361 attggcagaa tttgtaggct ggtggacaga cgggattcta ctaggactaa attttgtctg
421 gcaaggtatc agaaatatcc ctaggaggat tagacaggga ttagaaatag ccttaaatta
481 aaaagaaaaa tgggtggctg gcttgcaaaa ggatttccag gagcaaatag agcactaaga
541 cagattaaag aaacaccagc agatggagta ggacaagcct ccctagacat ggcagagaga
601 ggtggcttga ccacagccac tataaatagt catcatgatg tagcagaatg gtctcaagat
661 cattcagaag aagaagtagg ttttcctgtc aggcctcaag tacctctgag gcctatgaca
721 gaaaaagtag c
//
last modified: Tue May 31 10:56 2022