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LOCUS JQ866059 435 bp RNA linear VRL 12-SEP-2012
DEFINITION Simian immunodeficiency virus isolate MU409 envelope glycoprotein
(env) gene, partial cds
ACCESSION JQ866059
VERSION JQ866059.1 GI:392872227
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 435)
Show all sequences for reference 1
AUTHORS Li,Y., Ndjango,J.B., Learn,G.H., Ramirez,M.A., Keele,B.F.,
Bibollet-Ruche,F., Liu,W., Easlick,J.L., Decker,J.M.,
Rudicell,R.S., Inogwabini,B.I., Ahuka-Mundeke,S., Leendertz,F.H.,
Reynolds,V., Muller,M.N., Chancellor,R.L., Rundus,A.S., Simmons,N.,
Worobey,M., Shaw,G.M., Peeters,M., Sharp,P.M. and Hahn,B.H.
TITLE Eastern chimpanzees, but not bonobos, represent a simian
immunodeficiency virus reservoir
JOURNAL J. Virol. 86 (19), 10776-10791 (2012)
PUBMED 22837215
REFERENCE 2 (bases 1 to 435)
Show all sequences for reference 2
AUTHORS Li,Y., Ndjango,J.-B., Learn,G.H., Keele,B.F., Bibollet-Ruche,F.,
Easlick,J., Decker,J.M., Rudicell,R.S., Inogwabini,B.-I.,
Ahuka-Mundeke,S., Leendertz,F.H., Reynolds,V., Muller,M.N.,
Chancellor,R.L., Rundus,A.S., Simmonds,N., Worobey,M., Shaw,G.M.,
Peeters,M., Sharp,P.M. and Hahn,B.H.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2012) Dept. of Medicine, Perelman School of
Medicine, University of Pennsylvania, Johnson Pavilion 423, 3610
Hamilton Walk, Philadelphia, PA 19104, USA
COMMENT ##Assembly-Data-START## Assembly Method Sequencher v. 4 Sequencing
Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..435
/organism="Simian immunodeficiency virus"
/mol_type="genomic RNA"
/isolate="MU409"
/isolation_source="feces"
/host="Pan troglodytes schweinfurthii"
/db_xref="taxon:11723"
/country="Democratic Republic of the Congo"
/collection_date="27-Dec-2005"
gene <1..>435
/gene="env"
CDS <1..>435
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AFM85386.1"
/db_xref="GI:392872228"
/translation="TAQSRSLLHGIVQQQANLLQAIETQQHLLQLSIWGIKQLQARML
AIEKYLRDQQLLSLWGCADKLVCHTTVEWNSSWVINTGQGCPANDTQDYDCIWKNLTW
QEWDRMVQNSTSLIYKQLENAQIQQEQNKKQLLELDKWSSLWS"
BASE COUNT 150 a 89 c 94 g 102 t
ORIGIN
1 acggcacagt ccaggagctt gctccatgga attgtacagc agcaagccaa cttgctgcaa
61 gccatagaaa ctcaacaaca tttgttgcag ctttctatct ggggtataaa acaactccag
121 gcgagaatgc ttgcaataga gaagtaccta agagatcagc aactcttaag tctttgggga
181 tgcgctgaca aactggtctg tcataccact gtggaatgga acagctcttg ggtaataaac
241 actgggcaag gctgtcctgc caacgatact caggattatg attgtatttg gaaaaacctc
301 acctggcaag aatgggacag aatggttcaa aactccacaa gtcttatata taagcaatta
361 gaaaatgcac aaatacagca agaacagaat aagaaacaac tattagaatt agataaatgg
421 agctccttat ggtct
//
last modified: Tue May 31 10:56 2022