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LOCUS	    JQ864175		    2655 bp    DNA     linear	VRL 15-JUL-2012
DEFINITION  Simian immunodeficiency virus isolate H808-24w-5 envelope
	    glycoprotein (env) gene, complete cds
ACCESSION   JQ864175
VERSION     JQ864175.1 GI:392499054
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2655)
            Show all sequences for reference 1
  AUTHORS   Wu,F., Ourmanov,I., Kuwata,T., Goeken,R., Brown,C.R.,
	    Buckler-White,A., Iyengar,R., Plishka,R., Aoki,S.T. and Hirsch,V.M.
  TITLE     Sequential Evolution and Escape from Neutralization of Simian
	    Immunodeficiency Virus SIVsmE660 Clones in Rhesus Macaques.
  JOURNAL   J. Virol.. 86(16); 8835-47 (2012)
  PUBMED    22696650
REFERENCE   2 (bases 1 to 2655)
            Show all sequences for reference 2
  AUTHORS   Wu,F., Ourmanov,I., Kuwata,T., Goeken,R., Brown,C.R.,
	    Buckler-White,A., Iyengar,R., Plishka,R., Aoki,S.T. and Hirsch,V.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2012) Laboratory of Molecular Microbiology,
	    NIAID, NIH, 4 Center Drive, Room B1-33, Bethesda, MD 20892, USA
FEATURES             Location/Qualifiers
     source	     1..2655
		     /organism="Simian immunodeficiency virus"
		     /proviral="Simian immunodeficiency virus"
		     /mol_type="genomic DNA"
		     /isolate="H808-24w-5"
		     /host="Macaca mulatta (rhesus macaque)"
		     /db_xref="taxon:11723"
		     /country="USA"
		     /collection_date="24-Jan-2011"
     gene	     1..2655
		     /gene="env"
     CDS	     1..2655
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AFM75812.1"
		     /db_xref="GI:392499055"
		     /translation="MGCLGNQLLIALLLVSALEIYCVQYVTVFYGVPAWKNATIPLFC
		     TTRNRDTWGTTQCLPDNDDYSELAINITEAFDAWNNTVTEQAIEDVWNLFETSIKPCV
		     KLTPLCIAMRCNKTETDRWGLTRNAGTTTTTTTAATPSVAENVINESNPCIKNNSCAG
		     LEQEPMIGCKFNMTGLKRDKKIEYNETWYSRDLICEQSANESESKCYMHHCNTSVIQE
		     SCDKHYWDAIRFRYCAPPGYALLRCNDSNYSGFAPNCSKVVVSSCTRMMETQTSTWFG
		     FNGTRAENRTYIYWHGKSNRTIISLNKYYNLTMRCKRPGNKTVLPVTIMSGLVFHSQP
		     INERPKQAWCWFGGSWKEAIQEVKETLVKHPGYTGTNDTRKINLTAPAGGDPEVTFMW
		     TNCRGEFLYCKMNWFLNWVEDRDQNGSRWEQQNTKERQKRNYVPCHIRQIINTWHKVG
		     KNVYLPPREGDLTCNSTVTSLIAEIDWTNSKETNITMSAEVAELYRLELGDYKLVEIT
		     PIGLAPTSVRRYTTTGASRNKRGVFVLGFLGFLATAGSAMGAASLTLSAQSRTLLAGI
		     VQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNSWGCAFRQVCHT
		     TVPWPNETLVPNWSNMTWQEWERQVDFLEANITQLLEEAQIQQEKNMYELQKLNSWDI
		     FGNWFDLTSWIRYIQYGVLIVLGVVGLRIVIYVVQMLARLRQGYRPVFSSPPAYVQQI
		     PIHKDQEPPTKEGEEGEGGDRGGNRSWPWQIEYIHFLIRQLIRLLTWLFSSCRDWLLR
		     TYQILQPVLQSLSTTSQRVREVIRIGIAYLQYGWRYFQEAVQAWWKFARETLASAWRE
		     IWETLGRVGRGILAIPRRVRQGLELTLL"
BASE COUNT	860 a	 480 c	  657 g    658 t
ORIGIN
       1 atgggatgtc ttgggaatca gctgcttatc gcgctcttgc tagtaagtgc tttagagatt 
      61 tattgtgttc aatatgtaac agtattctat ggtgtaccag catggaagaa tgcgacaatt 
     121 cccctcttct gtacaaccag gaatagggac acttggggaa caacacaatg cttgccagat 
     181 aatgatgatt actcagaatt agcaatcaat atcacagagg cttttgatgc ttggaataat 
     241 acagtcacag aacaagcaat agaggatgtg tggaacctct ttgaaacatc cattaagccc 
     301 tgtgtaaaac tcaccccact atgtatagca atgagatgta ataaaactga gacagatagg 
     361 tggggtttga caaggaacgc agggacaaca acaacaacaa caacagcagc aacaccaagt 
     421 gtggcagaaa atgttataaa tgaaagtaat ccttgcataa aaaataatag ttgtgcaggc 
     481 ttggaacagg agcccatgat aggttgtaaa tttaacatga cagggttaaa aagggacaaa 
     541 aagatagagt ataatgaaac atggtattca agagatttaa tctgtgagca gtcagcgaat 
     601 gaaagtgaga gtaaatgtta catgcatcat tgtaacacca gtgttattca ggaatcctgt 
     661 gacaagcatt attgggatgc tattagattt agatattgtg caccgccagg ttatgctttg 
     721 cttaggtgta atgattcaaa ttattcaggc tttgctccta actgttctaa ggtagtggtt 
     781 tcttcatgca caagaatgat ggagacgcaa acctctactt ggtttggctt caatggtact 
     841 agggcagaaa atagaacata catttattgg catggcaaaa gtaatagaac cataattagt 
     901 ttaaataagt attataatct aacaatgaga tgtaaaagac caggaaataa gacagtttta 
     961 ccagtcacca ttatgtcagg gttggtcttc cattcgcagc ccataaatga gagaccaaaa 
    1021 caggcctggt gctggtttgg aggaagctgg aaagaggcca tccaggaagt gaaggaaacc 
    1081 ttggtcaaac atcccgggta tacgggaact aatgatacta ggaaaattaa tctaacagct 
    1141 ccagcaggag gagatccaga agtcactttt atgtggacaa attgtcgagg agaattctta 
    1201 tattgcaaaa tgaattggtt tcttaattgg gtagaggaca gagaccaaaa tggtagcaga 
    1261 tgggaacaac aaaatacgaa agagcgacag aagagaaatt atgtgccatg tcatattaga 
    1321 caaataatca acacgtggca caaagtaggc aaaaatgtat atttgcctcc tagggaagga 
    1381 gacctgacat gtaattccac tgtaactagt ctcatagcag agatagattg gaccaatagc 
    1441 aaggagacca atatcaccat gagtgcagag gtggcagaac tgtatcgatt ggagttggga 
    1501 gattacaaat tagtagagat tactccaatt ggcttggccc ccacaagtgt aagaaggtac 
    1561 accacaactg gtgcctcaag aaataagaga ggggtctttg tgctagggtt cttgggtttt 
    1621 ctcgcgacag caggttctgc aatgggcgcg gcgtcgctga cgctgtcggc tcagtcccgg 
    1681 actttgttgg ctgggatagt gcagcaacag caacagctgt tggatgtggt caagagacaa 
    1741 caagaattgt tgcgactgac cgtctgggga actaagaacc tccagactag agtcactgct 
    1801 atcgagaagt acctgaagga tcaggcgcag ctaaattcat ggggatgtgc ttttaggcaa 
    1861 gtctgtcaca ctactgtacc atggccaaat gaaacattgg tgcctaattg gagcaatatg 
    1921 acttggcaag agtgggaaag acaggttgac ttcctagagg caaatataac tcaattatta 
    1981 gaagaagcac aaattcagca agaaaagaat atgtatgaat tgcaaaaact aaatagctgg 
    2041 gatatctttg gcaattggtt tgaccttact tcttggataa gatatataca atatggtgta 
    2101 ttaatagttt taggagtagt agggttaaga atagtaatat atgtagtgca gatgttagct 
    2161 aggttaagac agggttatag gccagtgttc tcttcccctc ccgcttatgt tcagcagatc 
    2221 cctatccaca aggaccagga accgccaacc aaagaaggag aagaaggaga aggtggagac 
    2281 agaggtggca acagatcttg gccttggcag atagaatata ttcatttcct gatccgccaa 
    2341 ctgatacgcc tcttgacttg gctattcagc agctgcaggg attggctatt gaggacctac 
    2401 cagatcctcc aaccagtact ccaaagcctc tcaacgacgt cgcaaagagt ccgtgaagtc 
    2461 atcagaattg gaatagccta cctacaatat gggtggcgct atttccaaga agcagtgcag 
    2521 gcgtggtgga aatttgcgcg agagactctt gcaagcgcgt ggagagaaat atgggagact 
    2581 ctgggaaggg ttggaagagg gatactcgca atccctaggc gcgtcaggca agggcttgag 
    2641 ctcactctct tgtga
//
last modified: Tue May 31 10:56 2022


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