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LOCUS JQ744135 2728 bp DNA linear VRL 02-FEB-2013
DEFINITION Simian immunodeficiency virus isolate EC51.wk95.P5C6 from USA rev
protein (rev) gene, complete cds; tat protein (tat) gene, partial
cds; and envelope glycoprotein (env) gene, complete cds
ACCESSION JQ744135
VERSION JQ744135.1 GI:444175202
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2728)
Show all sequences for reference 1
AUTHORS Breed,M.W., Jordan,A.P., Aye,P.P., Lichtveld,C.F., Midkiff,C.C.,
Schiro,F.R., Haggarty,B.S., Sugimoto,C., Alvarez,X., Sandler,N.G.,
Douek,D.C., Kuroda,M.J., Pahar,B., Piatak,M. Jr.., Lifson,J.D.,
Keele,B.F., Hoxie,J.A. and Lackner,A.A.
TITLE Loss of a tyrosine-dependent trafficking motif in the simian
immunodeficiency virus envelope cytoplasmic tail spares mucosal CD4
cells but does not prevent disease progression
JOURNAL J. Virol. 87 (3), 1528-1543 (2013)
PUBMED 23152518
REFERENCE 2 (bases 1 to 2728)
Show all sequences for reference 2
AUTHORS Breed,M.W., Jordan,A.P.O., Aye,P.P., Lichtveld,C.F., Midkiff,C.,
Schiro,F., Haggarty,B.S., Sugimoto,C., Alvarez,X., Sandler,N.,
Douek,D.C., Kuroda,M.J., Pahar,B., Piatak,M. Jr.., Lifson,J.D.,
Keele,B.F., Hoxie,J.A. and Lackner,A.A.
TITLE Direct Submission
JOURNAL Submitted (06-MAR-2012) AIDS and Cancer Virus Program,
SAIC-Frederick, Inc., 1050 Boyles Street, Frederick, MD 21702, USA
FEATURES Location/Qualifiers
source 1..2728
/organism="Simian immunodeficiency virus"
/proviral="Simian immunodeficiency virus"
/mol_type="genomic DNA"
/isolate="EC51.wk95.P5C6"
/host="Macaca mulatta"
/db_xref="taxon:11723"
/country="USA"
gene 1..2544
/gene="rev"
CDS join(1..70,2291..2544)
/gene="rev"
/codon_start="1"
/transl_table="1"
/product="rev protein"
/protein_id="AGD81439.1"
/db_xref="GI:444175203"
/translation="MSNHEREEELRKRLRLIHLLHQTNPYPTGPGTANQRRQRRRRWR
RRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPGALCDPTGDS
RSPQD"
gene <1..2387
/gene="tat"
CDS join(<1..70,2291..2387)
/gene="tat"
/codon_start="3"
/transl_table="1"
/product="tat protein"
/protein_id="AGD81440.1"
/db_xref="GI:444175204"
/translation="EQSRKRRRTPKKAKANTSSASNESISNRTRHCQPKKAKKETVEK
AVATAPGLGR"
gene 77..2728
/gene="env"
CDS 77..2728
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AGD81441.1"
/db_xref="GI:444175205"
/translation="MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFC
ATKNRDTWGTTQCLPDNGDYSEMALNVTESFDAWNNTVTEQAIEDVWQLFETSTKPCV
KLSPLCITMKCNKSETDRWGLTKSITTTASTATATASTTSTTASAEVDMVNETSSCIA
QDNCTGLEQEQMISCKFNMTGLKRDKRREYNETWYSADLVCEQGNNTDNESRCYMNHC
NTSVIQESCDKHYWDAIRFRYCAPPGYALLRCNDTKYSGFMPKCSKVVVSSCTRMMET
QTSTWFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTIKCRRPGNKTVLPVTIMSG
LVFHSQPINDRPKQAWCWFGGEWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPGGGD
PEVTFMWTNCRGEFLYCKMNWFLNWVEDRNTTKEQHKRNYVPCHIRQIINTWHKVGKN
VYLPPREGDLTCNSTVTSLIANIDWIDGNQTNITMSAEVAELYRLELGDYKLVEITPI
GLAPTNVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMSAASLTLSAQSRTLLAGIVQ
QQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTV
PWPNTSLTPEWNNETWQEWERKVDFLEENITALLEEAQIQQERNMYELQKLNSWDVFG
NWFDLASWIKYIQYGVYIVVGIILLRIVIYTVQMLAKLAKVRQRPVFSSPPSYFQQIH
IQQDPALPTKEGKEGDGGEGGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSRV
YQILQPILQGLSATLQGIREVLRTELTYLQYGWSYFYEAVQAFWRSATETLAGAWGDL
WETLRRGGRWILAIPRRIRQGLELTLL"
BASE COUNT 882 a 519 c 655 g 671 t 1 other
ORIGIN
1 atgagcaatc acgaaagaga agaagaactc cgaaaaaggc taaggctaat acatcttctg
61 catcaaacga gtaagtatgg gatgtcttgg gaatcagctg cttatcgcca tcttgctttt
121 aagtgtctac gggatctatt gtactcaata tgtcacagtc ttttatggtg taccagcttg
181 gaggaatgcg acaattcccc tcttttgtgc aaccaagaat agggatactt ggggaacaac
241 tcagtgccta ccagataatg gtgattattc agaaatggcc cttaatgtta cagaaagctt
301 tgatgcctgg aataatacag tcacagaaca ggcaatagag gatgtatggc aactctttga
361 gacctcaaca aagccttgtg taaaattatc cccattatgc attactatga aatgcaataa
421 aagtgagaca gatagatggg gattgacaaa atcaataaca acaacagcat caacagcaac
481 agcaacagca tcaacaacat caacgacagc atcagcagaa gtagacatgg tcaatgagac
541 tagttcttgt atagcccagg ataattgcac aggcttggaa caagagcaaa tgataagctg
601 taaattcaac atgacagggc taaaaagaga caagagaaga gagtacaatg aaacttggta
661 ctctgcagat ttggtatgtg aacaagggaa taacactgat aatgaaagta gatgttacat
721 gaaccactgt aacacttctg ttatccaaga gtcttgtgac aaacattatt gggatgctat
781 tagatttagg tattgtgcac ctccaggtta tgctttgctt agatgtaatg acacaaagta
841 ttcaggcttt atgcctaaat gttctaaggt ggtggtctct tcatgcacaa ggatgatgga
901 gacacagact tctacttggt ttggctttaa tggaactaga gcagaaaata gaacttatat
961 ttactggcat ggtagggata ataggactat aattagttta aataagtatt ataatctaac
1021 aataaaatgt agaagaccag gaaataagac agttttacca gtcaccatta tgtctggatt
1081 ggttttccac tcacaaccaa tcaatgatag gccaaagcag gcatggtgtt ggtttggagg
1141 agaatggaag gatgcaataa aagaggtgaa gcagaccatt gtcaaacatc ccaggtatac
1201 tggaactaac aatactgata aaatcaattt gacggctcct ggaggaggag atccggaagt
1261 taccttcatg tggacaaatt gcagaggaga gttcctctac tgtaaaatga attggtttct
1321 aaattgggta gaagatagga atacaactaa ggaacagcat aaaaggaatt acgtgccatg
1381 tcatattaga caaataatca acacttggca taaagtaggc aaaaatgttt atttgcctcc
1441 aagagaggga gacctcacgt gtaactccac agtgaccagt ctcatagcaa acatagattg
1501 gattgatgga aaccaaacta atatcaccat gagtgcagag gtggcagaac tgtatcgatt
1561 ggaattggga gattataaat tagtagagat cactccaatt ggcttggccc ccacaaatgt
1621 gaagaggtac actactggtg gcacctcaag aaataaaaga ggggtctttg tgctagggtt
1681 cttgggtttt ctcgcaacgg caggttctgc aatgagcgcg gcgtcgttga cgctgtccgc
1741 tcagtcccga actttattgg ctgggatagt gcagcaacag caacagctgt tggacgtggt
1801 caagagacaa caagaattgt tgmgactgac cgtctgggga acaaagaacc tccagactag
1861 ggtcactgcc atcgagaagt acttaaagga ccaggcgcag ctgaatgctt ggggatgtgc
1921 gtttaggcaa gtctgccaca ctactgtacc atggccaaat acaagtctaa caccagagtg
1981 gaacaatgag acttggcaag agtgggagcg aaaggttgac ttcttggaag aaaatataac
2041 agccctccta gaggaggcac aaattcaaca agagaggaac atgtatgaat tacaaaagtt
2101 gaatagctgg gatgtgtttg gcaattggtt tgaccttgct tcttggataa agtatataca
2161 atatggagtt tatatagttg taggaataat actgttaaga atagtgatct atacagtaca
2221 gatgctagct aagttagcta aagtaaggca gaggccagtg ttctcttccc caccctctta
2281 tttccagcag atccatatcc aacaggaccc ggcactgcca accaaagaag gcaaagaagg
2341 agacggtgga gaaggcggtg gcaacagctc ctggccttgg cagatagaat atattcattt
2401 cctgatccgc caactgatac gcctcttgac ttggctattc agcaactgca gaaccttgct
2461 atcgagagta taccagatcc tccaaccaat actccagggg ctctctgcga ccctacaggg
2521 gattcgagaa gtcctcagga ctgaactgac ctacctacaa tatgggtgga gctatttcta
2581 tgaggcggtc caggccttct ggagatctgc gacagagact cttgcgggcg cgtggggaga
2641 cttatgggag actcttagga gaggtggaag atggatactc gcaatcccca ggaggattag
2701 acaagggctt gagctcactc tcttgtga
//
last modified: Tue May 31 10:56 2022