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LOCUS	    JQ744135		    2728 bp    DNA     linear	VRL 02-FEB-2013
DEFINITION  Simian immunodeficiency virus isolate EC51.wk95.P5C6 from USA rev
	    protein (rev) gene, complete cds; tat protein (tat) gene, partial
	    cds; and envelope glycoprotein (env) gene, complete cds
ACCESSION   JQ744135
VERSION     JQ744135.1 GI:444175202
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2728)
            Show all sequences for reference 1
  AUTHORS   Breed,M.W., Jordan,A.P., Aye,P.P., Lichtveld,C.F., Midkiff,C.C.,
	    Schiro,F.R., Haggarty,B.S., Sugimoto,C., Alvarez,X., Sandler,N.G.,
	    Douek,D.C., Kuroda,M.J., Pahar,B., Piatak,M. Jr.., Lifson,J.D.,
	    Keele,B.F., Hoxie,J.A. and Lackner,A.A.
  TITLE     Loss of a tyrosine-dependent trafficking motif in the simian
	    immunodeficiency virus envelope cytoplasmic tail spares mucosal CD4
	    cells but does not prevent disease progression
  JOURNAL   J. Virol. 87 (3), 1528-1543 (2013)
  PUBMED    23152518
REFERENCE   2 (bases 1 to 2728)
            Show all sequences for reference 2
  AUTHORS   Breed,M.W., Jordan,A.P.O., Aye,P.P., Lichtveld,C.F., Midkiff,C.,
	    Schiro,F., Haggarty,B.S., Sugimoto,C., Alvarez,X., Sandler,N.,
	    Douek,D.C., Kuroda,M.J., Pahar,B., Piatak,M. Jr.., Lifson,J.D.,
	    Keele,B.F., Hoxie,J.A. and Lackner,A.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2012) AIDS and Cancer Virus Program,
	    SAIC-Frederick, Inc., 1050 Boyles Street, Frederick, MD 21702, USA
FEATURES             Location/Qualifiers
     source	     1..2728
		     /organism="Simian immunodeficiency virus"
		     /proviral="Simian immunodeficiency virus"
		     /mol_type="genomic DNA"
		     /isolate="EC51.wk95.P5C6"
		     /host="Macaca mulatta"
		     /db_xref="taxon:11723"
		     /country="USA"
     gene	     1..2544
		     /gene="rev"
     CDS	     join(1..70,2291..2544)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AGD81439.1"
		     /db_xref="GI:444175203"
		     /translation="MSNHEREEELRKRLRLIHLLHQTNPYPTGPGTANQRRQRRRRWR
		     RRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPGALCDPTGDS
		     RSPQD"
     gene	     <1..2387
		     /gene="tat"
     CDS	     join(<1..70,2291..2387)
		     /gene="tat"
		     /codon_start="3"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AGD81440.1"
		     /db_xref="GI:444175204"
		     /translation="EQSRKRRRTPKKAKANTSSASNESISNRTRHCQPKKAKKETVEK
		     AVATAPGLGR"
     gene	     77..2728
		     /gene="env"
     CDS	     77..2728
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AGD81441.1"
		     /db_xref="GI:444175205"
		     /translation="MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFC
		     ATKNRDTWGTTQCLPDNGDYSEMALNVTESFDAWNNTVTEQAIEDVWQLFETSTKPCV
		     KLSPLCITMKCNKSETDRWGLTKSITTTASTATATASTTSTTASAEVDMVNETSSCIA
		     QDNCTGLEQEQMISCKFNMTGLKRDKRREYNETWYSADLVCEQGNNTDNESRCYMNHC
		     NTSVIQESCDKHYWDAIRFRYCAPPGYALLRCNDTKYSGFMPKCSKVVVSSCTRMMET
		     QTSTWFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTIKCRRPGNKTVLPVTIMSG
		     LVFHSQPINDRPKQAWCWFGGEWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPGGGD
		     PEVTFMWTNCRGEFLYCKMNWFLNWVEDRNTTKEQHKRNYVPCHIRQIINTWHKVGKN
		     VYLPPREGDLTCNSTVTSLIANIDWIDGNQTNITMSAEVAELYRLELGDYKLVEITPI
		     GLAPTNVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMSAASLTLSAQSRTLLAGIVQ
		     QQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTV
		     PWPNTSLTPEWNNETWQEWERKVDFLEENITALLEEAQIQQERNMYELQKLNSWDVFG
		     NWFDLASWIKYIQYGVYIVVGIILLRIVIYTVQMLAKLAKVRQRPVFSSPPSYFQQIH
		     IQQDPALPTKEGKEGDGGEGGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSRV
		     YQILQPILQGLSATLQGIREVLRTELTYLQYGWSYFYEAVQAFWRSATETLAGAWGDL
		     WETLRRGGRWILAIPRRIRQGLELTLL"
BASE COUNT	882 a	 519 c	  655 g    671 t      1 other
ORIGIN
       1 atgagcaatc acgaaagaga agaagaactc cgaaaaaggc taaggctaat acatcttctg 
      61 catcaaacga gtaagtatgg gatgtcttgg gaatcagctg cttatcgcca tcttgctttt 
     121 aagtgtctac gggatctatt gtactcaata tgtcacagtc ttttatggtg taccagcttg 
     181 gaggaatgcg acaattcccc tcttttgtgc aaccaagaat agggatactt ggggaacaac 
     241 tcagtgccta ccagataatg gtgattattc agaaatggcc cttaatgtta cagaaagctt 
     301 tgatgcctgg aataatacag tcacagaaca ggcaatagag gatgtatggc aactctttga 
     361 gacctcaaca aagccttgtg taaaattatc cccattatgc attactatga aatgcaataa 
     421 aagtgagaca gatagatggg gattgacaaa atcaataaca acaacagcat caacagcaac 
     481 agcaacagca tcaacaacat caacgacagc atcagcagaa gtagacatgg tcaatgagac 
     541 tagttcttgt atagcccagg ataattgcac aggcttggaa caagagcaaa tgataagctg 
     601 taaattcaac atgacagggc taaaaagaga caagagaaga gagtacaatg aaacttggta 
     661 ctctgcagat ttggtatgtg aacaagggaa taacactgat aatgaaagta gatgttacat 
     721 gaaccactgt aacacttctg ttatccaaga gtcttgtgac aaacattatt gggatgctat 
     781 tagatttagg tattgtgcac ctccaggtta tgctttgctt agatgtaatg acacaaagta 
     841 ttcaggcttt atgcctaaat gttctaaggt ggtggtctct tcatgcacaa ggatgatgga 
     901 gacacagact tctacttggt ttggctttaa tggaactaga gcagaaaata gaacttatat 
     961 ttactggcat ggtagggata ataggactat aattagttta aataagtatt ataatctaac 
    1021 aataaaatgt agaagaccag gaaataagac agttttacca gtcaccatta tgtctggatt 
    1081 ggttttccac tcacaaccaa tcaatgatag gccaaagcag gcatggtgtt ggtttggagg 
    1141 agaatggaag gatgcaataa aagaggtgaa gcagaccatt gtcaaacatc ccaggtatac 
    1201 tggaactaac aatactgata aaatcaattt gacggctcct ggaggaggag atccggaagt 
    1261 taccttcatg tggacaaatt gcagaggaga gttcctctac tgtaaaatga attggtttct 
    1321 aaattgggta gaagatagga atacaactaa ggaacagcat aaaaggaatt acgtgccatg 
    1381 tcatattaga caaataatca acacttggca taaagtaggc aaaaatgttt atttgcctcc 
    1441 aagagaggga gacctcacgt gtaactccac agtgaccagt ctcatagcaa acatagattg 
    1501 gattgatgga aaccaaacta atatcaccat gagtgcagag gtggcagaac tgtatcgatt 
    1561 ggaattggga gattataaat tagtagagat cactccaatt ggcttggccc ccacaaatgt 
    1621 gaagaggtac actactggtg gcacctcaag aaataaaaga ggggtctttg tgctagggtt 
    1681 cttgggtttt ctcgcaacgg caggttctgc aatgagcgcg gcgtcgttga cgctgtccgc 
    1741 tcagtcccga actttattgg ctgggatagt gcagcaacag caacagctgt tggacgtggt 
    1801 caagagacaa caagaattgt tgmgactgac cgtctgggga acaaagaacc tccagactag 
    1861 ggtcactgcc atcgagaagt acttaaagga ccaggcgcag ctgaatgctt ggggatgtgc 
    1921 gtttaggcaa gtctgccaca ctactgtacc atggccaaat acaagtctaa caccagagtg 
    1981 gaacaatgag acttggcaag agtgggagcg aaaggttgac ttcttggaag aaaatataac 
    2041 agccctccta gaggaggcac aaattcaaca agagaggaac atgtatgaat tacaaaagtt 
    2101 gaatagctgg gatgtgtttg gcaattggtt tgaccttgct tcttggataa agtatataca 
    2161 atatggagtt tatatagttg taggaataat actgttaaga atagtgatct atacagtaca 
    2221 gatgctagct aagttagcta aagtaaggca gaggccagtg ttctcttccc caccctctta 
    2281 tttccagcag atccatatcc aacaggaccc ggcactgcca accaaagaag gcaaagaagg 
    2341 agacggtgga gaaggcggtg gcaacagctc ctggccttgg cagatagaat atattcattt 
    2401 cctgatccgc caactgatac gcctcttgac ttggctattc agcaactgca gaaccttgct 
    2461 atcgagagta taccagatcc tccaaccaat actccagggg ctctctgcga ccctacaggg 
    2521 gattcgagaa gtcctcagga ctgaactgac ctacctacaa tatgggtgga gctatttcta 
    2581 tgaggcggtc caggccttct ggagatctgc gacagagact cttgcgggcg cgtggggaga 
    2641 cttatgggag actcttagga gaggtggaag atggatactc gcaatcccca ggaggattag 
    2701 acaagggctt gagctcactc tcttgtga
//
last modified: Tue May 31 10:56 2022


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