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LOCUS JQ744092 2710 bp DNA linear VRL 02-FEB-2013
DEFINITION Simian immunodeficiency virus isolate DT18.wk95.P1A1 from USA rev
protein (rev) gene, complete cds; tat protein (tat) gene, partial
cds; and envelope glycoprotein (env) gene, complete cds
ACCESSION JQ744092
VERSION JQ744092.1 GI:444175034
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2710)
Show all sequences for reference 1
AUTHORS Breed,M.W., Jordan,A.P., Aye,P.P., Lichtveld,C.F., Midkiff,C.C.,
Schiro,F.R., Haggarty,B.S., Sugimoto,C., Alvarez,X., Sandler,N.G.,
Douek,D.C., Kuroda,M.J., Pahar,B., Piatak,M. Jr.., Lifson,J.D.,
Keele,B.F., Hoxie,J.A. and Lackner,A.A.
TITLE Loss of a tyrosine-dependent trafficking motif in the simian
immunodeficiency virus envelope cytoplasmic tail spares mucosal CD4
cells but does not prevent disease progression
JOURNAL J. Virol. 87 (3), 1528-1543 (2013)
PUBMED 23152518
REFERENCE 2 (bases 1 to 2710)
Show all sequences for reference 2
AUTHORS Breed,M.W., Jordan,A.P.O., Aye,P.P., Lichtveld,C.F., Midkiff,C.,
Schiro,F., Haggarty,B.S., Sugimoto,C., Alvarez,X., Sandler,N.,
Douek,D.C., Kuroda,M.J., Pahar,B., Piatak,M. Jr.., Lifson,J.D.,
Keele,B.F., Hoxie,J.A. and Lackner,A.A.
TITLE Direct Submission
JOURNAL Submitted (06-MAR-2012) AIDS and Cancer Virus Program,
SAIC-Frederick, Inc., 1050 Boyles Street, Frederick, MD 21702, USA
FEATURES Location/Qualifiers
source 1..2710
/organism="Simian immunodeficiency virus"
/proviral="Simian immunodeficiency virus"
/mol_type="genomic DNA"
/isolate="DT18.wk95.P1A1"
/host="Macaca mulatta"
/db_xref="taxon:11723"
/country="USA"
gene 1..2526
/gene="rev"
CDS join(1..70,2273..2526)
/gene="rev"
/codon_start="1"
/transl_table="1"
/product="rev protein"
/protein_id="AGD81314.1"
/db_xref="GI:444175035"
/translation="MSNREREEELRKRLRLIHLLHQTNPYQTGSGTANQRRQRRRRWR
RRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNIPEALRDPTEDS
GSPQD"
gene <1..2369
/gene="tat"
CDS join(<1..70,2273..2369)
/gene="tat"
/codon_start="3"
/transl_table="1"
/product="tat protein"
/protein_id="AGD81315.1"
/db_xref="GI:444175036"
/translation="EQSRKRRRTPKKAKANTSSASNEPISNRIRHCQPEKAKKETVEK
AVATAPGLGR"
gene 77..2710
/gene="env"
CDS 77..2710
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AGD81316.1"
/db_xref="GI:444175037"
/translation="MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFC
ATKNRDTWGTTQCLPDNGDYSEMALNVTESFDAWNNTVTEQAIEDVWQLFETSIRPCV
KLSLLCVTMRCNKSETDRWGLTKSITTTASTTSTTASAEVDMVNETSSCIAQDNCTGL
EQEQMISCKFNMTGLKRDKKKEYNETWYSADLVCEQGNNTGNESRCYMNHCNTSVIQE
SCDKHYWDAIRFRYCAPPGYALLRCNDTNYSGFMPNCSKVVVSSCTRMMETQTSTWFG
FNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHSQP
INDRPKQAWCWFGGEWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPGGGDPEVTFMW
TNCRGEFLYCKMNWFLNWVEDRNTANQKPTEQHKRNYVPCHIRQIINTWHKVGKNVYL
PPREGDLTCNSTVTSLIANIDWIDGNQTNITMSAEVAELYRLELGDYKLVEITPIGLA
PTNVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQQQQ
QLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCXTTVPWP
NTSLTPDWNNETWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFGNWF
DLASWIKYIQYGVHIVVGVILLRIVIYIVQMLAKLRQRPVFSPPPSYFQQTHIKQDPA
LPTREGKEGDGGEGGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSRVYQILQP
IFQRLSATLQRIREVLRTELTYLQYGWSYFQEAVQAVWRAATETLAGAWGDLWETLRR
GGRRILAIPRRIRQGLELTLL"
BASE COUNT 869 a 514 c 659 g 667 t 1 other
ORIGIN
1 atgagcaatc gcgaaagaga agaagaactc cgaaaaaggc taaggctaat acatcttctg
61 catcaaacga gtaagtatgg gatgtcttgg gaatcagctg cttatcgcca tcttgctttt
121 aagtgtctat gggatctatt gtactcaata tgtcacagtc ttttatggtg taccagcttg
181 gaggaatgcg acaattcccc tcttttgtgc aaccaagaat agggatactt ggggaacaac
241 tcagtgccta ccagataatg gtgattattc agaaatggcc cttaatgtta cagaaagctt
301 tgatgcctgg aataatacag tcacagaaca ggcaatagag gatgtatggc aactctttga
361 gacctcaata aggccttgtg taaaattatc cctattatgc gttactatga gatgcaataa
421 aagtgagaca gatagatggg gattgacaaa atcaataaca acaacagcat caacaacatc
481 aacgacagca tcagcagaag tagacatggt caatgagact agttcttgta tagcccagga
541 taattgcaca ggcttggaac aagagcaaat gataagctgt aaattcaaca tgacagggtt
601 aaaaagagac aagaaaaaag agtacaatga aacttggtac tctgcagatt tggtatgtga
661 acaagggaat aacactggta atgaaagtag atgttacatg aaccactgta acacttctgt
721 tatccaagag tcttgtgaca aacattattg ggatgctatt agatttaggt attgtgcacc
781 tccaggttat gctttgctta gatgtaatga cacaaattat tcaggcttta tgcctaactg
841 ttctaaggtg gtggtctctt catgcacaag gatgatggag acacagactt ctacttggtt
901 tggctttaat ggaactagag cagaaaatag aacttatatt tactggcatg gtagggataa
961 taggactata attagtttaa ataagtatta taatctaaca atgaaatgta gaagaccagg
1021 aaataagaca gttttaccag tcaccattat gtctggattg gttttccact cacaaccaat
1081 caatgatagg ccaaagcagg catggtgttg gtttggagga gaatggaagg atgcaataaa
1141 agaggtgaag cagaccattg tcaaacatcc caggtatact ggaactaaca atactgataa
1201 aatcaatttg acggctcctg gaggaggaga tccggaagtt accttcatgt ggacaaattg
1261 cagaggagag ttcctctact gtaaaatgaa ttggtttcta aattgggtag aagataggaa
1321 tacagctaac cagaagccaa cggaacagca taaaaggaat tacgtgccat gtcatattag
1381 acaaataatc aacacttggc ataaagtagg caaaaatgtt tatttgcctc caagagaggg
1441 agacctcacg tgtaactcca cagtgaccag tctcatagca aacatagatt ggattgatgg
1501 aaaccaaact aatatcacca tgagtgcaga ggtggcagaa ctgtatcgat tggaattggg
1561 agattataaa ttagtagaga tcactccaat tggcttggcc cccacaaatg tgaagaggta
1621 cactactggt ggcacctcaa gaaataaaag aggggtcttt gtgctagggt tcttgggttt
1681 tctcgcaacg gcaggttctg caatgggcgc ggcgtcgttg acgctgaccg ctcagtcccg
1741 gactttattg gctgggatag tgcagcaaca gcaacagctg ttggacgtgg tcaagagaca
1801 acaagaattg ttgcgactga ccgtctgggg aacaaagaac ctccagacta gggtcactgc
1861 catcgagaag tacttaaagg accaggcgca gctgaatgct tggggatgtg cgtttagaca
1921 ggtctgccwc actactgtac catggccaaa tacaagtcta acaccagatt ggaacaatga
1981 gacttggcaa gagtgggagc gaaaggttga cttcttggag gaaaatataa cagccctcct
2041 agaggaggca caaattcaac aagagaagaa catgtatgaa ttacaaaagt tgaatagctg
2101 ggatgtgttt ggcaattggt ttgaccttgc ttcttggata aagtatatac aatatggagt
2161 tcatatagtt gtaggagtaa tactgttaag aatagtgatc tatatagtac aaatgctagc
2221 taagttaagg cagaggccag tgttctctcc cccaccctct tatttccagc agacccatat
2281 caaacaggat ccggcactgc caaccagaga aggcaaagaa ggagacggtg gagaaggcgg
2341 tggcaacagc tcctggcctt ggcagataga atatattcat ttcctgatcc gccaactgat
2401 acgcctcttg acttggctat tcagcaactg cagaaccttg ctatcgagag tataccagat
2461 cctccaacca atattccaga ggctctccgc gaccctacag aggattcggg aagtcctcag
2521 gactgaactg acctacctac aatatgggtg gagctatttc caggaggcgg tccaggcagt
2581 ctggagagct gcgacagaga ctcttgcagg cgcgtgggga gacttatggg agactcttag
2641 gagaggtgga agaaggatac tcgcaatccc caggaggatt agacaagggc ttgagctcac
2701 tctcttgtga
//
last modified: Tue May 31 10:56 2022