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LOCUS	    JQ744092		    2710 bp    DNA     linear	VRL 02-FEB-2013
DEFINITION  Simian immunodeficiency virus isolate DT18.wk95.P1A1 from USA rev
	    protein (rev) gene, complete cds; tat protein (tat) gene, partial
	    cds; and envelope glycoprotein (env) gene, complete cds
ACCESSION   JQ744092
VERSION     JQ744092.1 GI:444175034
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2710)
            Show all sequences for reference 1
  AUTHORS   Breed,M.W., Jordan,A.P., Aye,P.P., Lichtveld,C.F., Midkiff,C.C.,
	    Schiro,F.R., Haggarty,B.S., Sugimoto,C., Alvarez,X., Sandler,N.G.,
	    Douek,D.C., Kuroda,M.J., Pahar,B., Piatak,M. Jr.., Lifson,J.D.,
	    Keele,B.F., Hoxie,J.A. and Lackner,A.A.
  TITLE     Loss of a tyrosine-dependent trafficking motif in the simian
	    immunodeficiency virus envelope cytoplasmic tail spares mucosal CD4
	    cells but does not prevent disease progression
  JOURNAL   J. Virol. 87 (3), 1528-1543 (2013)
  PUBMED    23152518
REFERENCE   2 (bases 1 to 2710)
            Show all sequences for reference 2
  AUTHORS   Breed,M.W., Jordan,A.P.O., Aye,P.P., Lichtveld,C.F., Midkiff,C.,
	    Schiro,F., Haggarty,B.S., Sugimoto,C., Alvarez,X., Sandler,N.,
	    Douek,D.C., Kuroda,M.J., Pahar,B., Piatak,M. Jr.., Lifson,J.D.,
	    Keele,B.F., Hoxie,J.A. and Lackner,A.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2012) AIDS and Cancer Virus Program,
	    SAIC-Frederick, Inc., 1050 Boyles Street, Frederick, MD 21702, USA
FEATURES             Location/Qualifiers
     source	     1..2710
		     /organism="Simian immunodeficiency virus"
		     /proviral="Simian immunodeficiency virus"
		     /mol_type="genomic DNA"
		     /isolate="DT18.wk95.P1A1"
		     /host="Macaca mulatta"
		     /db_xref="taxon:11723"
		     /country="USA"
     gene	     1..2526
		     /gene="rev"
     CDS	     join(1..70,2273..2526)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AGD81314.1"
		     /db_xref="GI:444175035"
		     /translation="MSNREREEELRKRLRLIHLLHQTNPYQTGSGTANQRRQRRRRWR
		     RRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNIPEALRDPTEDS
		     GSPQD"
     gene	     <1..2369
		     /gene="tat"
     CDS	     join(<1..70,2273..2369)
		     /gene="tat"
		     /codon_start="3"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AGD81315.1"
		     /db_xref="GI:444175036"
		     /translation="EQSRKRRRTPKKAKANTSSASNEPISNRIRHCQPEKAKKETVEK
		     AVATAPGLGR"
     gene	     77..2710
		     /gene="env"
     CDS	     77..2710
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AGD81316.1"
		     /db_xref="GI:444175037"
		     /translation="MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFC
		     ATKNRDTWGTTQCLPDNGDYSEMALNVTESFDAWNNTVTEQAIEDVWQLFETSIRPCV
		     KLSLLCVTMRCNKSETDRWGLTKSITTTASTTSTTASAEVDMVNETSSCIAQDNCTGL
		     EQEQMISCKFNMTGLKRDKKKEYNETWYSADLVCEQGNNTGNESRCYMNHCNTSVIQE
		     SCDKHYWDAIRFRYCAPPGYALLRCNDTNYSGFMPNCSKVVVSSCTRMMETQTSTWFG
		     FNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHSQP
		     INDRPKQAWCWFGGEWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPGGGDPEVTFMW
		     TNCRGEFLYCKMNWFLNWVEDRNTANQKPTEQHKRNYVPCHIRQIINTWHKVGKNVYL
		     PPREGDLTCNSTVTSLIANIDWIDGNQTNITMSAEVAELYRLELGDYKLVEITPIGLA
		     PTNVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQQQQ
		     QLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCXTTVPWP
		     NTSLTPDWNNETWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFGNWF
		     DLASWIKYIQYGVHIVVGVILLRIVIYIVQMLAKLRQRPVFSPPPSYFQQTHIKQDPA
		     LPTREGKEGDGGEGGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSRVYQILQP
		     IFQRLSATLQRIREVLRTELTYLQYGWSYFQEAVQAVWRAATETLAGAWGDLWETLRR
		     GGRRILAIPRRIRQGLELTLL"
BASE COUNT	869 a	 514 c	  659 g    667 t      1 other
ORIGIN
       1 atgagcaatc gcgaaagaga agaagaactc cgaaaaaggc taaggctaat acatcttctg 
      61 catcaaacga gtaagtatgg gatgtcttgg gaatcagctg cttatcgcca tcttgctttt 
     121 aagtgtctat gggatctatt gtactcaata tgtcacagtc ttttatggtg taccagcttg 
     181 gaggaatgcg acaattcccc tcttttgtgc aaccaagaat agggatactt ggggaacaac 
     241 tcagtgccta ccagataatg gtgattattc agaaatggcc cttaatgtta cagaaagctt 
     301 tgatgcctgg aataatacag tcacagaaca ggcaatagag gatgtatggc aactctttga 
     361 gacctcaata aggccttgtg taaaattatc cctattatgc gttactatga gatgcaataa 
     421 aagtgagaca gatagatggg gattgacaaa atcaataaca acaacagcat caacaacatc 
     481 aacgacagca tcagcagaag tagacatggt caatgagact agttcttgta tagcccagga 
     541 taattgcaca ggcttggaac aagagcaaat gataagctgt aaattcaaca tgacagggtt 
     601 aaaaagagac aagaaaaaag agtacaatga aacttggtac tctgcagatt tggtatgtga 
     661 acaagggaat aacactggta atgaaagtag atgttacatg aaccactgta acacttctgt 
     721 tatccaagag tcttgtgaca aacattattg ggatgctatt agatttaggt attgtgcacc 
     781 tccaggttat gctttgctta gatgtaatga cacaaattat tcaggcttta tgcctaactg 
     841 ttctaaggtg gtggtctctt catgcacaag gatgatggag acacagactt ctacttggtt 
     901 tggctttaat ggaactagag cagaaaatag aacttatatt tactggcatg gtagggataa 
     961 taggactata attagtttaa ataagtatta taatctaaca atgaaatgta gaagaccagg 
    1021 aaataagaca gttttaccag tcaccattat gtctggattg gttttccact cacaaccaat 
    1081 caatgatagg ccaaagcagg catggtgttg gtttggagga gaatggaagg atgcaataaa 
    1141 agaggtgaag cagaccattg tcaaacatcc caggtatact ggaactaaca atactgataa 
    1201 aatcaatttg acggctcctg gaggaggaga tccggaagtt accttcatgt ggacaaattg 
    1261 cagaggagag ttcctctact gtaaaatgaa ttggtttcta aattgggtag aagataggaa 
    1321 tacagctaac cagaagccaa cggaacagca taaaaggaat tacgtgccat gtcatattag 
    1381 acaaataatc aacacttggc ataaagtagg caaaaatgtt tatttgcctc caagagaggg 
    1441 agacctcacg tgtaactcca cagtgaccag tctcatagca aacatagatt ggattgatgg 
    1501 aaaccaaact aatatcacca tgagtgcaga ggtggcagaa ctgtatcgat tggaattggg 
    1561 agattataaa ttagtagaga tcactccaat tggcttggcc cccacaaatg tgaagaggta 
    1621 cactactggt ggcacctcaa gaaataaaag aggggtcttt gtgctagggt tcttgggttt 
    1681 tctcgcaacg gcaggttctg caatgggcgc ggcgtcgttg acgctgaccg ctcagtcccg 
    1741 gactttattg gctgggatag tgcagcaaca gcaacagctg ttggacgtgg tcaagagaca 
    1801 acaagaattg ttgcgactga ccgtctgggg aacaaagaac ctccagacta gggtcactgc 
    1861 catcgagaag tacttaaagg accaggcgca gctgaatgct tggggatgtg cgtttagaca 
    1921 ggtctgccwc actactgtac catggccaaa tacaagtcta acaccagatt ggaacaatga 
    1981 gacttggcaa gagtgggagc gaaaggttga cttcttggag gaaaatataa cagccctcct 
    2041 agaggaggca caaattcaac aagagaagaa catgtatgaa ttacaaaagt tgaatagctg 
    2101 ggatgtgttt ggcaattggt ttgaccttgc ttcttggata aagtatatac aatatggagt 
    2161 tcatatagtt gtaggagtaa tactgttaag aatagtgatc tatatagtac aaatgctagc 
    2221 taagttaagg cagaggccag tgttctctcc cccaccctct tatttccagc agacccatat 
    2281 caaacaggat ccggcactgc caaccagaga aggcaaagaa ggagacggtg gagaaggcgg 
    2341 tggcaacagc tcctggcctt ggcagataga atatattcat ttcctgatcc gccaactgat 
    2401 acgcctcttg acttggctat tcagcaactg cagaaccttg ctatcgagag tataccagat 
    2461 cctccaacca atattccaga ggctctccgc gaccctacag aggattcggg aagtcctcag 
    2521 gactgaactg acctacctac aatatgggtg gagctatttc caggaggcgg tccaggcagt 
    2581 ctggagagct gcgacagaga ctcttgcagg cgcgtgggga gacttatggg agactcttag 
    2641 gagaggtgga agaaggatac tcgcaatccc caggaggatt agacaagggc ttgagctcac 
    2701 tctcttgtga 
//
last modified: Tue May 31 10:56 2022


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