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LOCUS	    JQ744062		    2710 bp    DNA     linear	VRL 02-FEB-2013
DEFINITION  Simian immunodeficiency virus isolate DT18.WK37.P1B7 from USA rev
	    protein (rev) gene, complete cds; tat protein (tat) gene, partial
	    cds; and nonfunctional envelope glycoprotein (env) gene, complete
	    sequence
ACCESSION   JQ744062
VERSION     JQ744062.1 GI:444174916
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2710)
            Show all sequences for reference 1
  AUTHORS   Breed,M.W., Jordan,A.P., Aye,P.P., Lichtveld,C.F., Midkiff,C.C.,
	    Schiro,F.R., Haggarty,B.S., Sugimoto,C., Alvarez,X., Sandler,N.G.,
	    Douek,D.C., Kuroda,M.J., Pahar,B., Piatak,M. Jr.., Lifson,J.D.,
	    Keele,B.F., Hoxie,J.A. and Lackner,A.A.
  TITLE     Loss of a tyrosine-dependent trafficking motif in the simian
	    immunodeficiency virus envelope cytoplasmic tail spares mucosal CD4
	    cells but does not prevent disease progression
  JOURNAL   J. Virol. 87 (3), 1528-1543 (2013)
  PUBMED    23152518
REFERENCE   2 (bases 1 to 2710)
            Show all sequences for reference 2
  AUTHORS   Breed,M.W., Jordan,A.P.O., Aye,P.P., Lichtveld,C.F., Midkiff,C.,
	    Schiro,F., Haggarty,B.S., Sugimoto,C., Alvarez,X., Sandler,N.,
	    Douek,D.C., Kuroda,M.J., Pahar,B., Piatak,M. Jr.., Lifson,J.D.,
	    Keele,B.F., Hoxie,J.A. and Lackner,A.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2012) AIDS and Cancer Virus Program,
	    SAIC-Frederick, Inc., 1050 Boyles Street, Frederick, MD 21702, USA
FEATURES             Location/Qualifiers
     source	     1..2710
		     /organism="Simian immunodeficiency virus"
		     /proviral="Simian immunodeficiency virus"
		     /mol_type="genomic DNA"
		     /isolate="DT18.WK37.P1B7"
		     /host="Macaca mulatta"
		     /db_xref="taxon:11723"
		     /country="USA"
     gene	     1..2526
		     /gene="rev"
     CDS	     join(1..70,2273..2526)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AGD81226.1"
		     /db_xref="GI:444174917"
		     /translation="MSNHEREEELRKRLRLIHLLHQTNPYPTGPSTASQRRQRRRRWR
		     RRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPEALCDPTEDS
		     GSPQD"
     gene	     <1..2369
		     /gene="tat"
     CDS	     join(<1..70,2273..2369)
		     /gene="tat"
		     /codon_start="3"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AGD81227.1"
		     /db_xref="GI:444174918"
		     /translation="EQSRKRRRTPKKAKANTSSASNKPISNRTQHCQPEKAKKETVEK
		     AVATAPGLGR"
     gene	     77..2710
		     /gene="env"
     misc_feature    77..2710
		     /gene="env"
		     /note="nonfunctional envelope glycoprotein due to
		     mutation"
BASE COUNT	883 a	 514 c	  646 g    667 t
ORIGIN
       1 atgagcaatc acgaaagaga agaagaactc cgaaaaaggc taaggctaat acatcttctg 
      61 catcaaacaa gtaagtatgg gatgtcttgg gaatcagctg cttatcgcca tcttgctttt 
     121 aagtgtctat gggatctatt gtactctata tgtcacagtc ttttatggtg taccagcttg 
     181 gaggaatgcg acaattcccc tcttttgtgc aaccaagaat agggatactt gaggaacaac 
     241 tcagtgccta ccagataatg gtgattattc agaaatggcc cttaatgtta cagaaagctt 
     301 tgatgcctgg aataatacag tcacagaaca ggcaatagag gatgtatggc aactctttga 
     361 gacctcaata aagccttgtg taaaattatc cccattatgc gttactatga gatgcaataa 
     421 aagtgagaca gaaagatagg gattgacaaa atcaataaca acaacagcat caacaacatc 
     481 aacgacagca tcagcaaaag tagacatggt caatgagact agttcttgta tagcccagga 
     541 taattgcaca ggcttggaac aagagcaaat gataagctgt aaattcaaca tgacagggtt 
     601 aaaaagagac aagaaaaaag agtacaatga aacttggtac tctgcagatt tggtatgtga 
     661 acaagggaat aacactggta atgaaagtag atgttacatg aaccactgta acacttctgt 
     721 tatccaagag tcttgtgaca aacattattg ggatgctatt agatttaggt attgtgcacc 
     781 tccaggttat gctttgctta gatgtaatga cacaaattat tcaggcttta tgcctaaatg 
     841 ttctaaggtg gtggtctctt catgcacaag gatgatggag acacagactt ctacttggtt 
     901 tggctttaat ggaactagag cagaaaatag aacttatatt tactggcatg gtagggataa 
     961 taggactata attagtttaa ataagtatta taatctaaca atgaaatgta gaagaccagg 
    1021 aaataagaca gttttaccag tcaccattat gtctggattg gttttccact cacaaccaat 
    1081 caatgatagg ccaaggcagg catggtgttg gtttggagga aaatggaagg atgcaataaa 
    1141 agaggtgaag cagaccattg tcaaacatcc caggtatact ggaactaaca atactgataa 
    1201 aatcaatttg acggctcctg gaggaggaga tccagaagtt accttcatgt ggacaaattg 
    1261 cagaggagag ttcctctact gtaaaatgaa ttggtttcta aattgggtag aagataggaa 
    1321 tacagctaac caggagccaa aggaacagca taaaaggaat tacgtgccat gtcatattag 
    1381 acaaataatc aacacttggc ataaagtagg caaaaatgtt tatttgcctc cgagagaggg 
    1441 agacctcacg tgtaactcca cagtgaccag tctcatagca aacatagatt ggattgatgg 
    1501 aaaccaaact aatatcacca tgagtgcaga ggtggcagaa ctgtatcgat tggaattggg 
    1561 agattataaa ttagtagaga tcactccaat tggcttggcc cccacaaatg tgaagaggta 
    1621 cactactggt ggcacctcaa gaaataaaag aggggtcttt gtgctagggt tcttaggttt 
    1681 tctcgcaacg gcaggttctg caatgggcgc ggcgtcgttg acgctgaccg ctcagtcccg 
    1741 aactttattg gctgggatag tgcagcaaca gcaacagctg ttggacgtgg tcaagagaca 
    1801 acaagaattg ttgcgactga ccgtctgggg aacaaagaac ctccagacta gggtcactgc 
    1861 catcgagaag tacttaaagg accaggcgca gctgaatgct tggggatgta cgtttagaca 
    1921 agtctgccac actactgtac catggccaaa tgcaaatcta acaccaaagt ggaacaatga 
    1981 gacttggcaa gagtaggagc gaaaggttga cttcttggaa gaaaatataa cagccctcct 
    2041 agaggaggca caaattcaac aagagaagaa catgtatgaa ttacaaaagt tgaatagcta 
    2101 ggatgtgttt ggcaattggt ttgaccttgc ttcttggata aagtatatac aatatggagt 
    2161 ttatatagtt gtaggagtaa tactgttaag aatagtgatc tatatagtac aaatgctagc 
    2221 taagttaagg cagaggccag tgttctcctc cccaccctct tatttccagc agacccatat 
    2281 ccaacaggac ccagcactgc cagccagaga aggcaaagaa ggagacggtg gagaaggcgg 
    2341 tggcaacagc tcctggcctt ggcagataga atatattcat ttcctgatcc gccaactgat 
    2401 acgcctcttg acttggctat tcagcaactg cagaaccttg ctatcgagag tataccagat 
    2461 cctccaacca atactccaga ggctctctgc gaccctacag aggattcggg aagtcctcag 
    2521 gactgaactg acctacctac aatatgggtg gagctatttc caggaggcgg tccaggcagt 
    2581 ctggagatct gcgacagaga ctcttgcggg cgcgtgggga gacttatagg agactcttag 
    2641 gagaggtgga agatggatac tcgcaatccc caggaggatt agacaagggc ttgagctcac 
    2701 tctcttgtga 
//
last modified: Tue May 31 10:56 2022


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