View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS JQ744062 2710 bp DNA linear VRL 02-FEB-2013
DEFINITION Simian immunodeficiency virus isolate DT18.WK37.P1B7 from USA rev
protein (rev) gene, complete cds; tat protein (tat) gene, partial
cds; and nonfunctional envelope glycoprotein (env) gene, complete
sequence
ACCESSION JQ744062
VERSION JQ744062.1 GI:444174916
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2710)
Show all sequences for reference 1
AUTHORS Breed,M.W., Jordan,A.P., Aye,P.P., Lichtveld,C.F., Midkiff,C.C.,
Schiro,F.R., Haggarty,B.S., Sugimoto,C., Alvarez,X., Sandler,N.G.,
Douek,D.C., Kuroda,M.J., Pahar,B., Piatak,M. Jr.., Lifson,J.D.,
Keele,B.F., Hoxie,J.A. and Lackner,A.A.
TITLE Loss of a tyrosine-dependent trafficking motif in the simian
immunodeficiency virus envelope cytoplasmic tail spares mucosal CD4
cells but does not prevent disease progression
JOURNAL J. Virol. 87 (3), 1528-1543 (2013)
PUBMED 23152518
REFERENCE 2 (bases 1 to 2710)
Show all sequences for reference 2
AUTHORS Breed,M.W., Jordan,A.P.O., Aye,P.P., Lichtveld,C.F., Midkiff,C.,
Schiro,F., Haggarty,B.S., Sugimoto,C., Alvarez,X., Sandler,N.,
Douek,D.C., Kuroda,M.J., Pahar,B., Piatak,M. Jr.., Lifson,J.D.,
Keele,B.F., Hoxie,J.A. and Lackner,A.A.
TITLE Direct Submission
JOURNAL Submitted (06-MAR-2012) AIDS and Cancer Virus Program,
SAIC-Frederick, Inc., 1050 Boyles Street, Frederick, MD 21702, USA
FEATURES Location/Qualifiers
source 1..2710
/organism="Simian immunodeficiency virus"
/proviral="Simian immunodeficiency virus"
/mol_type="genomic DNA"
/isolate="DT18.WK37.P1B7"
/host="Macaca mulatta"
/db_xref="taxon:11723"
/country="USA"
gene 1..2526
/gene="rev"
CDS join(1..70,2273..2526)
/gene="rev"
/codon_start="1"
/transl_table="1"
/product="rev protein"
/protein_id="AGD81226.1"
/db_xref="GI:444174917"
/translation="MSNHEREEELRKRLRLIHLLHQTNPYPTGPSTASQRRQRRRRWR
RRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPEALCDPTEDS
GSPQD"
gene <1..2369
/gene="tat"
CDS join(<1..70,2273..2369)
/gene="tat"
/codon_start="3"
/transl_table="1"
/product="tat protein"
/protein_id="AGD81227.1"
/db_xref="GI:444174918"
/translation="EQSRKRRRTPKKAKANTSSASNKPISNRTQHCQPEKAKKETVEK
AVATAPGLGR"
gene 77..2710
/gene="env"
misc_feature 77..2710
/gene="env"
/note="nonfunctional envelope glycoprotein due to
mutation"
BASE COUNT 883 a 514 c 646 g 667 t
ORIGIN
1 atgagcaatc acgaaagaga agaagaactc cgaaaaaggc taaggctaat acatcttctg
61 catcaaacaa gtaagtatgg gatgtcttgg gaatcagctg cttatcgcca tcttgctttt
121 aagtgtctat gggatctatt gtactctata tgtcacagtc ttttatggtg taccagcttg
181 gaggaatgcg acaattcccc tcttttgtgc aaccaagaat agggatactt gaggaacaac
241 tcagtgccta ccagataatg gtgattattc agaaatggcc cttaatgtta cagaaagctt
301 tgatgcctgg aataatacag tcacagaaca ggcaatagag gatgtatggc aactctttga
361 gacctcaata aagccttgtg taaaattatc cccattatgc gttactatga gatgcaataa
421 aagtgagaca gaaagatagg gattgacaaa atcaataaca acaacagcat caacaacatc
481 aacgacagca tcagcaaaag tagacatggt caatgagact agttcttgta tagcccagga
541 taattgcaca ggcttggaac aagagcaaat gataagctgt aaattcaaca tgacagggtt
601 aaaaagagac aagaaaaaag agtacaatga aacttggtac tctgcagatt tggtatgtga
661 acaagggaat aacactggta atgaaagtag atgttacatg aaccactgta acacttctgt
721 tatccaagag tcttgtgaca aacattattg ggatgctatt agatttaggt attgtgcacc
781 tccaggttat gctttgctta gatgtaatga cacaaattat tcaggcttta tgcctaaatg
841 ttctaaggtg gtggtctctt catgcacaag gatgatggag acacagactt ctacttggtt
901 tggctttaat ggaactagag cagaaaatag aacttatatt tactggcatg gtagggataa
961 taggactata attagtttaa ataagtatta taatctaaca atgaaatgta gaagaccagg
1021 aaataagaca gttttaccag tcaccattat gtctggattg gttttccact cacaaccaat
1081 caatgatagg ccaaggcagg catggtgttg gtttggagga aaatggaagg atgcaataaa
1141 agaggtgaag cagaccattg tcaaacatcc caggtatact ggaactaaca atactgataa
1201 aatcaatttg acggctcctg gaggaggaga tccagaagtt accttcatgt ggacaaattg
1261 cagaggagag ttcctctact gtaaaatgaa ttggtttcta aattgggtag aagataggaa
1321 tacagctaac caggagccaa aggaacagca taaaaggaat tacgtgccat gtcatattag
1381 acaaataatc aacacttggc ataaagtagg caaaaatgtt tatttgcctc cgagagaggg
1441 agacctcacg tgtaactcca cagtgaccag tctcatagca aacatagatt ggattgatgg
1501 aaaccaaact aatatcacca tgagtgcaga ggtggcagaa ctgtatcgat tggaattggg
1561 agattataaa ttagtagaga tcactccaat tggcttggcc cccacaaatg tgaagaggta
1621 cactactggt ggcacctcaa gaaataaaag aggggtcttt gtgctagggt tcttaggttt
1681 tctcgcaacg gcaggttctg caatgggcgc ggcgtcgttg acgctgaccg ctcagtcccg
1741 aactttattg gctgggatag tgcagcaaca gcaacagctg ttggacgtgg tcaagagaca
1801 acaagaattg ttgcgactga ccgtctgggg aacaaagaac ctccagacta gggtcactgc
1861 catcgagaag tacttaaagg accaggcgca gctgaatgct tggggatgta cgtttagaca
1921 agtctgccac actactgtac catggccaaa tgcaaatcta acaccaaagt ggaacaatga
1981 gacttggcaa gagtaggagc gaaaggttga cttcttggaa gaaaatataa cagccctcct
2041 agaggaggca caaattcaac aagagaagaa catgtatgaa ttacaaaagt tgaatagcta
2101 ggatgtgttt ggcaattggt ttgaccttgc ttcttggata aagtatatac aatatggagt
2161 ttatatagtt gtaggagtaa tactgttaag aatagtgatc tatatagtac aaatgctagc
2221 taagttaagg cagaggccag tgttctcctc cccaccctct tatttccagc agacccatat
2281 ccaacaggac ccagcactgc cagccagaga aggcaaagaa ggagacggtg gagaaggcgg
2341 tggcaacagc tcctggcctt ggcagataga atatattcat ttcctgatcc gccaactgat
2401 acgcctcttg acttggctat tcagcaactg cagaaccttg ctatcgagag tataccagat
2461 cctccaacca atactccaga ggctctctgc gaccctacag aggattcggg aagtcctcag
2521 gactgaactg acctacctac aatatgggtg gagctatttc caggaggcgg tccaggcagt
2581 ctggagatct gcgacagaga ctcttgcggg cgcgtgggga gacttatagg agactcttag
2641 gagaggtgga agatggatac tcgcaatccc caggaggatt agacaagggc ttgagctcac
2701 tctcttgtga
//
last modified: Tue May 31 10:56 2022