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LOCUS JQ716909 867 bp RNA linear VRL 22-MAY-2012
DEFINITION HIV-1 isolate BAA295928 from Spain integrase (pol) gene, partial
cds
ACCESSION JQ716909
VERSION JQ716909.1 GI:387863512
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 867)
Show all sequences for reference 1
AUTHORS Garrido,C., Villacian,J., Zahonero,N., Pattery,T., Garcia,F.,
Gutierrez,F., Caballero,E., Van Houtte,M., Soriano,V. and de
Mendoza,C.
CONSRTM on behalf of the SINRES Group
TITLE Broad Phenotypic Cross-Resistance to Elvitegravir in HIV-Infected
Patients Failing on Raltegravir-Containing Regimens
JOURNAL Antimicrob. Agents Chemother. 56 (6), 2873-2878 (2012)
PUBMED 22450969
REFERENCE 2 (bases 1 to 867)
Show all sequences for reference 2
AUTHORS Garrido,C., Villacian,J., Zahonero,N., Pattery,T., Garcia,F.,
Gutierrez,F., Caballero,E., Van Houtte,M., Soriano,V. and de
Mendoza,C.
CONSRTM on behalf of the SINRES Group
TITLE Direct Submission
JOURNAL Submitted (27-FEB-2012) Infectious Diseases, Hospital Carlos III,
c/ Sinesio Delgado 10, Madrid, Madrid 28029, Spain
COMMENT ##Assembly-Data-START## Assembly Method SeqScape v. v2.5 Sequencing
Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..867
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="BAA295928"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Spain"
/collection_date="2009"
gene <1..867
/gene="pol"
CDS <1..867
/gene="pol"
/note="pol protein"
/codon_start="1"
/transl_table="1"
/product="integrase"
/protein_id="AFK09319.1"
/db_xref="GI:387863513"
/translation="FLDGIXKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQ
LKGEAMHGQVDCSPGVWQLDCTHXEGXXILVAVHVASGYIEAEVIPAETGQETAYFLL
KLAGRWPVKTXHTDNGSNFTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKK
IIGQVRDQAEHLXTALQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKALQKQIX
KIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMA
GDDCVASRQDED"
BASE COUNT 332 a 133 c 208 g 179 t 15 other
ORIGIN
1 tttttagatg gaatagawaa ggcccaagaa gaacatgaga aatatcacaa taattggaga
61 gcaatggcta gtgattttaa cctgccacct gtagtagcaa aagaaatagt agccagctgt
121 gataaatgtc arctraaagg agaagccatg catggacaag tagactgcag tccaggagta
181 tggcaactag attgtacaca twyagargga araaytatcc tggtagcagt tcatgtagcc
241 agtggatata tagaagcaga agttattcca gcagagacag gacaggarac cgcatacttc
301 ctcttaaaat tagcaggaag atggccagta aaaacartac atacagacaa tggcagcaac
361 ttcaccagta atgcagttaa agckgcctgt tggtgggcgg ggatcaagca agaatttggc
421 attccctaca atccccaaag tcaaggggta gtagaatcwa tgaataagga attaaagaaa
481 attataggac argtaagaga tcaggctgaa catcttarga cagcactaca aatggcagtg
541 ttcattcaca attttaaaag aaaagggggg attggggggt acagtgcagg agaaagaata
601 gtagacataa tagcaacaga catacaaact aaagcattac aaaaacaaat twcaaaaatt
661 caaaattttc gggtttatta cagggacagc agagatccac tttggaaagg accagcaaag
721 cttctctgga aaggtgaagg ggcagtagta atacaagata atagtgacat aaaagtagtc
781 ccaagaagaa aagcaaaaat cattagggat tatggaaaac agatggcagg tgatgattgt
841 gtggcaagta gacaggatga ggattag
//
last modified: Tue May 31 10:56 2022