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LOCUS	    JQ716909		     867 bp    RNA     linear	VRL 22-MAY-2012
DEFINITION  HIV-1 isolate BAA295928 from Spain integrase (pol) gene, partial
	    cds
ACCESSION   JQ716909
VERSION     JQ716909.1 GI:387863512
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 867)
            Show all sequences for reference 1
  AUTHORS   Garrido,C., Villacian,J., Zahonero,N., Pattery,T., Garcia,F.,
	    Gutierrez,F., Caballero,E., Van Houtte,M., Soriano,V. and de
	    Mendoza,C.
  CONSRTM   on behalf of the SINRES Group
  TITLE     Broad Phenotypic Cross-Resistance to Elvitegravir in HIV-Infected
	    Patients Failing on Raltegravir-Containing Regimens
  JOURNAL   Antimicrob. Agents Chemother. 56 (6), 2873-2878 (2012)
  PUBMED    22450969
REFERENCE   2 (bases 1 to 867)
            Show all sequences for reference 2
  AUTHORS   Garrido,C., Villacian,J., Zahonero,N., Pattery,T., Garcia,F.,
	    Gutierrez,F., Caballero,E., Van Houtte,M., Soriano,V. and de
	    Mendoza,C.
  CONSRTM   on behalf of the SINRES Group
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2012) Infectious Diseases, Hospital Carlos III,
	    c/ Sinesio Delgado 10, Madrid, Madrid 28029, Spain
COMMENT     ##Assembly-Data-START## Assembly Method SeqScape v. v2.5 Sequencing
	    Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..867
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="BAA295928"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Spain"
		     /collection_date="2009"
     gene	     <1..867
		     /gene="pol"
     CDS	     <1..867
		     /gene="pol"
		     /note="pol protein"
		     /codon_start="1"
		     /transl_table="1"
		     /product="integrase"
		     /protein_id="AFK09319.1"
		     /db_xref="GI:387863513"
		     /translation="FLDGIXKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQ
		     LKGEAMHGQVDCSPGVWQLDCTHXEGXXILVAVHVASGYIEAEVIPAETGQETAYFLL
		     KLAGRWPVKTXHTDNGSNFTSNAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKK
		     IIGQVRDQAEHLXTALQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKALQKQIX
		     KIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMA
		     GDDCVASRQDED"
BASE COUNT	332 a	 133 c	  208 g    179 t     15 other
ORIGIN
       1 tttttagatg gaatagawaa ggcccaagaa gaacatgaga aatatcacaa taattggaga 
      61 gcaatggcta gtgattttaa cctgccacct gtagtagcaa aagaaatagt agccagctgt 
     121 gataaatgtc arctraaagg agaagccatg catggacaag tagactgcag tccaggagta 
     181 tggcaactag attgtacaca twyagargga araaytatcc tggtagcagt tcatgtagcc 
     241 agtggatata tagaagcaga agttattcca gcagagacag gacaggarac cgcatacttc 
     301 ctcttaaaat tagcaggaag atggccagta aaaacartac atacagacaa tggcagcaac 
     361 ttcaccagta atgcagttaa agckgcctgt tggtgggcgg ggatcaagca agaatttggc 
     421 attccctaca atccccaaag tcaaggggta gtagaatcwa tgaataagga attaaagaaa 
     481 attataggac argtaagaga tcaggctgaa catcttarga cagcactaca aatggcagtg 
     541 ttcattcaca attttaaaag aaaagggggg attggggggt acagtgcagg agaaagaata 
     601 gtagacataa tagcaacaga catacaaact aaagcattac aaaaacaaat twcaaaaatt 
     661 caaaattttc gggtttatta cagggacagc agagatccac tttggaaagg accagcaaag 
     721 cttctctgga aaggtgaagg ggcagtagta atacaagata atagtgacat aaaagtagtc 
     781 ccaagaagaa aagcaaaaat cattagggat tatggaaaac agatggcagg tgatgattgt 
     841 gtggcaagta gacaggatga ggattag
//
last modified: Tue May 31 10:56 2022


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