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LOCUS	    JQ677667		    2740 bp    DNA     linear	VRL 02-MAY-2012
DEFINITION  Simian immunodeficiency virus isolate 36336.wk1.P1A8 rev protein
	    (rev) gene, complete cds; tat protein (tat) gene, partial cds;
	    envelope glycoprotein (env) gene, complete cds; and nef protein
	    (nef) gene, partial cds
ACCESSION   JQ677667
VERSION     JQ677667.1 GI:385299395
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2740)
            Show all sequences for reference 1
  AUTHORS   Ma,Z.-M., Keele,B.F., Qureshi,H., Stone,M., Desilva,V., Fritts,L.,
	    Lifson,J.D. and Miller,C.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-FEB-2012) AIDS and Cancer Virus Program, National
	    Cancer Institute-Frederick, 1050 Boyles Street, Frederick, MD
	    21702, USA
REFERENCE   2
            Show all sequences for reference 2
  AUTHORS   Ma,Z.-M., Keele,B.F., Qureshi,H., Stone,M., Desilva,V., Fritts,L.,
	    Lifson,J.D. and Miller,C.J.
  TITLE     SIVmac251 is inefficiently transmitted to rhesus macaques by penile
	    inoculation with a single SIVenv variant found in ramp-up phase
	    plasma.
  JOURNAL   AIDS Res. Hum. Retroviruses. 27(12); 1259-69 (2011)
  PUBMED    21732792
FEATURES             Location/Qualifiers
     source	     1..2740
		     /organism="Simian immunodeficiency virus"
		     /proviral="Simian immunodeficiency virus"
		     /mol_type="genomic DNA"
		     /strain="SIVmac251"
		     /isolate="36336.wk1.P1A8"
		     /host="Rhesus macaque"
		     /db_xref="taxon:11723"
		     /country="USA"
		     /collection_date="01-Jan-2010"
     gene	     1..2556
		     /gene="rev"
     CDS	     join(1..70,2303..2556)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AFI60570.1"
		     /db_xref="GI:385299396"
		     /translation="MSSHEREEELRKRLRLIHLLHQTNPYPTGPGTANQRRQRRRRWR
		     KRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPEALCDPTENS
		     RSPQD"
     gene	     <1..2399
		     /gene="tat"
     CDS	     join(<1..70,2303..2399)
		     /gene="tat"
		     /codon_start="3"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AFI60571.1"
		     /db_xref="GI:385299397"
		     /translation="EQSRKRRRTPKKAKANTSSASNKPISNRTRHCQPEKAKKETVEK
		     AVATAPGLGR"
     gene	     77..2740
		     /gene="env"
     CDS	     77..2740
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AFI60572.1"
		     /db_xref="GI:385299398"
		     /translation="MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFC
		     ATKNRDTWGTTQCLPDNNDYSELALNVTESFDAWENTVTEQAIEDVWQLFETSIKPCV
		     KLSPLCITMRCNKSETDKWGLTKSSTTTTATTATPASTTRTTSAKIDMVNETSSCITH
		     NNCTGLEQEQMISCKFNMTGLKRDKKKEYNETWYSTDLVCEQGNSTDNESRCYMNHCN
		     TSVIQESCDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQ
		     TSTWFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGL
		     VFHSQPINDRPKQAWCWFGGNWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPRGGDP
		     EVTFMWTNCRGEFLYCKMNWFLNWVEDRNLTLTTQKLRERHKRNYVPCHIRQIINTWH
		     KVGKNVYLPPREGDLPCNSTVTSLIANIDWTDGNQTNITMSAEVAELYRLELGDYKLV
		     EITPIGLAPTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLL
		     AGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQV
		     CHTTVPWPNASLTPDWNNDTWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNS
		     WDVFGNWFDLASWIKYIQYGVYIVVGVILLRIVIYIVQMLARLRQGYRPVFSSPPSYF
		     QQTHIQQDPALPTREGKEGDGGESGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTL
		     LSRAYQILQPILQRLSATLRRIREVLRTELTYLQYGWSYFHEAVQAGWRSATETLAGA
		     WGDLWETLRRGGRWILAIPRRIRQGLELTLL"
     gene	     2574..>2740
		     /gene="nef"
     CDS	     2574..>2740
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="AFI60573.1"
		     /db_xref="GI:385299399"
		     /translation="MGGAISMRRSKPAGDLRQRLLRARGETYGRLLGEVEDGSSQSLG
		     GLDKGLSSLSC"
BASE COUNT	886 a	 526 c	  651 g    677 t
ORIGIN
       1 atgagcagtc acgaaagaga agaagaactc cgaaaaaggc taaggctaat acatcttctg 
      61 catcaaacaa gtaagtatgg gatgtcttgg gaatcagctg cttatcgcca tcttgctttt 
     121 aagtgtctat gggatctatt gtactcaata tgtcacagtc ttttatggtg taccagcttg 
     181 gaggaatgcg acaattcccc tcttctgtgc aaccaagaat agggatactt ggggaacaac 
     241 tcagtgccta ccagataata atgattattc agaattggcc cttaatgtta cagaaagctt 
     301 tgatgcttgg gagaatacag tcacagaaca ggcaatagag gatgtatggc aactctttga 
     361 gacctcaata aagccttgtg taaaattatc cccattatgc attactatga gatgcaataa 
     421 aagtgagaca gataaatggg gattaacaaa atcatcaaca acaacaacag caacaacagc 
     481 aacaccagca tcaacaacaa ggacaacatc agcaaaaata gacatggtca atgagactag 
     541 ttcttgtata actcataata attgcacagg cttggaacaa gagcaaatga taagctgtaa 
     601 gttcaacatg acagggttaa aaagagacaa gaaaaaggag tacaatgaaa cttggtactc 
     661 tacagatttg gtctgtgaac aagggaatag cactgataat gaaagtagat gctacatgaa 
     721 tcactgtaac acttctgtta tccaagagtc ttgtgacaag cattattggg atactattag 
     781 atttaggtat tgtgcacctc caggttatgc tttgcttaga tgtaatgaca caaattattc 
     841 aggctttatg cctaaatgtt ctaaggtggt ggtctcttca tgcacaagga tgatggagac 
     901 acagacttct acttggtttg gctttaatgg aactagagca gaaaatagaa cttatattta 
     961 ctggcatggt agagataata ggactataat tagtttaaat aagtattata atctaacaat 
    1021 gaaatgtaga agaccaggaa ataagacagt tttaccagtc accattatgt ctggattggt 
    1081 tttccactca caaccaatca atgataggcc aaagcaggca tggtgttggt ttggaggaaa 
    1141 ttggaaggat gcaataaaag aggtgaagca gaccattgtc aaacatccca ggtatactgg 
    1201 aactaacaat actgataaga tcaatttgac ggctcctaga ggaggagatc cggaagttac 
    1261 cttcatgtgg acaaattgca gaggagagtt tctctactgt aaaatgaatt ggtttctaaa 
    1321 ttgggtagaa gataggaatc taactctaac tacccagaag ctaagggaac ggcataaaag 
    1381 gaattacgtg ccatgtcata ttagacaaat aatcaacact tggcataaag taggcaaaaa 
    1441 tgtttatttg cctccaagag agggagacct cccgtgtaac tccacagtga ccagtctcat 
    1501 agcaaacata gattggactg atggaaatca aactaatatc accatgagtg cagaggtggc 
    1561 agaactgtat cgattggaat tgggagatta taaattagta gagatcactc caattggctt 
    1621 ggcccccaca gatgtgaaga ggtacactac tggtggcacc tcaagaaata aaagaggggt 
    1681 ctttgtgcta gggttcttgg gctttctcgc aacggcaggt tctgcaatgg gcgcggcgtc 
    1741 attgacgctg accgctcagt cccggacttt attggctggg atagtgcagc aacagcaaca 
    1801 gctgttggac gtggtcaaga gacaacaaga attgttgcga ctgaccgtct ggggaacaaa 
    1861 gaacctccag actagggtca ctgccatcga gaagtactta aaggaccagg cgcagctgaa 
    1921 tgcttgggga tgtgcgttta gacaagtctg ccacactact gtaccatggc caaatgcaag 
    1981 tctaacacca gactggaaca atgatacttg gcaagagtgg gagcgaaagg ttgacttctt 
    2041 ggaggaaaat ataacagccc tcctagaaga ggcacaaatt caacaagaga agaacatgta 
    2101 tgagttacaa aagttgaata gctgggatgt gtttggcaat tggtttgacc ttgcttcttg 
    2161 gataaagtat atacaatatg gagtttatat agttgtagga gtaatactgt taagaatagt 
    2221 gatctatata gtacaaatgc tagctaggtt aaggcagggg tataggccag tgttctcttc 
    2281 cccaccctct tatttccagc agacccatat ccaacaggac ccggcactgc caaccagaga 
    2341 aggcaaagaa ggagacggtg gagaaagcgg tggcaacagc tcctggcctt ggcagataga 
    2401 atatattcat ttcctgatcc gccaactgat acgcctcttg acttggctat tcagcaactg 
    2461 cagaaccttg ctatcgagag cataccagat cctccaacca atactccaga ggctctctgc 
    2521 gaccctacgg agaattcgag aagtcctcag gactgaactg acctacctac aatatgggtg 
    2581 gagctatttc catgaggcgg tccaagccgg ctggagatct gcgacagaga ctcttgcggg 
    2641 cgcgtgggga gacttatggg agactcttag gagaggtgga agatggatcc tcgcaatccc 
    2701 taggaggatt agacaagggc ttgagctcac tctcttgtga 
//
last modified: Tue May 31 10:56 2022


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