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LOCUS JQ677667 2740 bp DNA linear VRL 02-MAY-2012
DEFINITION Simian immunodeficiency virus isolate 36336.wk1.P1A8 rev protein
(rev) gene, complete cds; tat protein (tat) gene, partial cds;
envelope glycoprotein (env) gene, complete cds; and nef protein
(nef) gene, partial cds
ACCESSION JQ677667
VERSION JQ677667.1 GI:385299395
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2740)
Show all sequences for reference 1
AUTHORS Ma,Z.-M., Keele,B.F., Qureshi,H., Stone,M., Desilva,V., Fritts,L.,
Lifson,J.D. and Miller,C.J.
TITLE Direct Submission
JOURNAL Submitted (14-FEB-2012) AIDS and Cancer Virus Program, National
Cancer Institute-Frederick, 1050 Boyles Street, Frederick, MD
21702, USA
REFERENCE 2
Show all sequences for reference 2
AUTHORS Ma,Z.-M., Keele,B.F., Qureshi,H., Stone,M., Desilva,V., Fritts,L.,
Lifson,J.D. and Miller,C.J.
TITLE SIVmac251 is inefficiently transmitted to rhesus macaques by penile
inoculation with a single SIVenv variant found in ramp-up phase
plasma.
JOURNAL AIDS Res. Hum. Retroviruses. 27(12); 1259-69 (2011)
PUBMED 21732792
FEATURES Location/Qualifiers
source 1..2740
/organism="Simian immunodeficiency virus"
/proviral="Simian immunodeficiency virus"
/mol_type="genomic DNA"
/strain="SIVmac251"
/isolate="36336.wk1.P1A8"
/host="Rhesus macaque"
/db_xref="taxon:11723"
/country="USA"
/collection_date="01-Jan-2010"
gene 1..2556
/gene="rev"
CDS join(1..70,2303..2556)
/gene="rev"
/codon_start="1"
/transl_table="1"
/product="rev protein"
/protein_id="AFI60570.1"
/db_xref="GI:385299396"
/translation="MSSHEREEELRKRLRLIHLLHQTNPYPTGPGTANQRRQRRRRWR
KRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPEALCDPTENS
RSPQD"
gene <1..2399
/gene="tat"
CDS join(<1..70,2303..2399)
/gene="tat"
/codon_start="3"
/transl_table="1"
/product="tat protein"
/protein_id="AFI60571.1"
/db_xref="GI:385299397"
/translation="EQSRKRRRTPKKAKANTSSASNKPISNRTRHCQPEKAKKETVEK
AVATAPGLGR"
gene 77..2740
/gene="env"
CDS 77..2740
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AFI60572.1"
/db_xref="GI:385299398"
/translation="MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFC
ATKNRDTWGTTQCLPDNNDYSELALNVTESFDAWENTVTEQAIEDVWQLFETSIKPCV
KLSPLCITMRCNKSETDKWGLTKSSTTTTATTATPASTTRTTSAKIDMVNETSSCITH
NNCTGLEQEQMISCKFNMTGLKRDKKKEYNETWYSTDLVCEQGNSTDNESRCYMNHCN
TSVIQESCDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQ
TSTWFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGL
VFHSQPINDRPKQAWCWFGGNWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPRGGDP
EVTFMWTNCRGEFLYCKMNWFLNWVEDRNLTLTTQKLRERHKRNYVPCHIRQIINTWH
KVGKNVYLPPREGDLPCNSTVTSLIANIDWTDGNQTNITMSAEVAELYRLELGDYKLV
EITPIGLAPTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLL
AGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQV
CHTTVPWPNASLTPDWNNDTWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNS
WDVFGNWFDLASWIKYIQYGVYIVVGVILLRIVIYIVQMLARLRQGYRPVFSSPPSYF
QQTHIQQDPALPTREGKEGDGGESGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTL
LSRAYQILQPILQRLSATLRRIREVLRTELTYLQYGWSYFHEAVQAGWRSATETLAGA
WGDLWETLRRGGRWILAIPRRIRQGLELTLL"
gene 2574..>2740
/gene="nef"
CDS 2574..>2740
/gene="nef"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="AFI60573.1"
/db_xref="GI:385299399"
/translation="MGGAISMRRSKPAGDLRQRLLRARGETYGRLLGEVEDGSSQSLG
GLDKGLSSLSC"
BASE COUNT 886 a 526 c 651 g 677 t
ORIGIN
1 atgagcagtc acgaaagaga agaagaactc cgaaaaaggc taaggctaat acatcttctg
61 catcaaacaa gtaagtatgg gatgtcttgg gaatcagctg cttatcgcca tcttgctttt
121 aagtgtctat gggatctatt gtactcaata tgtcacagtc ttttatggtg taccagcttg
181 gaggaatgcg acaattcccc tcttctgtgc aaccaagaat agggatactt ggggaacaac
241 tcagtgccta ccagataata atgattattc agaattggcc cttaatgtta cagaaagctt
301 tgatgcttgg gagaatacag tcacagaaca ggcaatagag gatgtatggc aactctttga
361 gacctcaata aagccttgtg taaaattatc cccattatgc attactatga gatgcaataa
421 aagtgagaca gataaatggg gattaacaaa atcatcaaca acaacaacag caacaacagc
481 aacaccagca tcaacaacaa ggacaacatc agcaaaaata gacatggtca atgagactag
541 ttcttgtata actcataata attgcacagg cttggaacaa gagcaaatga taagctgtaa
601 gttcaacatg acagggttaa aaagagacaa gaaaaaggag tacaatgaaa cttggtactc
661 tacagatttg gtctgtgaac aagggaatag cactgataat gaaagtagat gctacatgaa
721 tcactgtaac acttctgtta tccaagagtc ttgtgacaag cattattggg atactattag
781 atttaggtat tgtgcacctc caggttatgc tttgcttaga tgtaatgaca caaattattc
841 aggctttatg cctaaatgtt ctaaggtggt ggtctcttca tgcacaagga tgatggagac
901 acagacttct acttggtttg gctttaatgg aactagagca gaaaatagaa cttatattta
961 ctggcatggt agagataata ggactataat tagtttaaat aagtattata atctaacaat
1021 gaaatgtaga agaccaggaa ataagacagt tttaccagtc accattatgt ctggattggt
1081 tttccactca caaccaatca atgataggcc aaagcaggca tggtgttggt ttggaggaaa
1141 ttggaaggat gcaataaaag aggtgaagca gaccattgtc aaacatccca ggtatactgg
1201 aactaacaat actgataaga tcaatttgac ggctcctaga ggaggagatc cggaagttac
1261 cttcatgtgg acaaattgca gaggagagtt tctctactgt aaaatgaatt ggtttctaaa
1321 ttgggtagaa gataggaatc taactctaac tacccagaag ctaagggaac ggcataaaag
1381 gaattacgtg ccatgtcata ttagacaaat aatcaacact tggcataaag taggcaaaaa
1441 tgtttatttg cctccaagag agggagacct cccgtgtaac tccacagtga ccagtctcat
1501 agcaaacata gattggactg atggaaatca aactaatatc accatgagtg cagaggtggc
1561 agaactgtat cgattggaat tgggagatta taaattagta gagatcactc caattggctt
1621 ggcccccaca gatgtgaaga ggtacactac tggtggcacc tcaagaaata aaagaggggt
1681 ctttgtgcta gggttcttgg gctttctcgc aacggcaggt tctgcaatgg gcgcggcgtc
1741 attgacgctg accgctcagt cccggacttt attggctggg atagtgcagc aacagcaaca
1801 gctgttggac gtggtcaaga gacaacaaga attgttgcga ctgaccgtct ggggaacaaa
1861 gaacctccag actagggtca ctgccatcga gaagtactta aaggaccagg cgcagctgaa
1921 tgcttgggga tgtgcgttta gacaagtctg ccacactact gtaccatggc caaatgcaag
1981 tctaacacca gactggaaca atgatacttg gcaagagtgg gagcgaaagg ttgacttctt
2041 ggaggaaaat ataacagccc tcctagaaga ggcacaaatt caacaagaga agaacatgta
2101 tgagttacaa aagttgaata gctgggatgt gtttggcaat tggtttgacc ttgcttcttg
2161 gataaagtat atacaatatg gagtttatat agttgtagga gtaatactgt taagaatagt
2221 gatctatata gtacaaatgc tagctaggtt aaggcagggg tataggccag tgttctcttc
2281 cccaccctct tatttccagc agacccatat ccaacaggac ccggcactgc caaccagaga
2341 aggcaaagaa ggagacggtg gagaaagcgg tggcaacagc tcctggcctt ggcagataga
2401 atatattcat ttcctgatcc gccaactgat acgcctcttg acttggctat tcagcaactg
2461 cagaaccttg ctatcgagag cataccagat cctccaacca atactccaga ggctctctgc
2521 gaccctacgg agaattcgag aagtcctcag gactgaactg acctacctac aatatgggtg
2581 gagctatttc catgaggcgg tccaagccgg ctggagatct gcgacagaga ctcttgcggg
2641 cgcgtgggga gacttatggg agactcttag gagaggtgga agatggatcc tcgcaatccc
2701 taggaggatt agacaagggc ttgagctcac tctcttgtga
//
last modified: Tue May 31 10:56 2022