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LOCUS	    JQ677607		    2731 bp    DNA     linear	VRL 02-MAY-2012
DEFINITION  Simian immunodeficiency virus isolate 36193.wk1.P2C1 rev protein
	    (rev) gene, complete cds; tat protein (tat) gene, partial cds;
	    envelope glycoprotein (env) gene, complete cds; and nef protein
	    (nef) gene, partial cds
ACCESSION   JQ677607
VERSION     JQ677607.1 GI:385299103
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2731)
            Show all sequences for reference 1
  AUTHORS   Ma,Z.-M., Keele,B.F., Qureshi,H., Stone,M., Desilva,V., Fritts,L.,
	    Lifson,J.D. and Miller,C.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-FEB-2012) AIDS and Cancer Virus Program, National
	    Cancer Institute-Frederick, 1050 Boyles Street, Frederick, MD
	    21702, USA
REFERENCE   2
            Show all sequences for reference 2
  AUTHORS   Ma,Z.-M., Keele,B.F., Qureshi,H., Stone,M., Desilva,V., Fritts,L.,
	    Lifson,J.D. and Miller,C.J.
  TITLE     SIVmac251 is inefficiently transmitted to rhesus macaques by penile
	    inoculation with a single SIVenv variant found in ramp-up phase
	    plasma.
  JOURNAL   AIDS Res. Hum. Retroviruses. 27(12); 1259-69 (2011)
  PUBMED    21732792
FEATURES             Location/Qualifiers
     source	     1..2731
		     /organism="Simian immunodeficiency virus"
		     /proviral="Simian immunodeficiency virus"
		     /mol_type="genomic DNA"
		     /strain="SIVmac251"
		     /isolate="36193.wk1.P2C1"
		     /host="Rhesus macaque"
		     /db_xref="taxon:11723"
		     /country="USA"
		     /collection_date="01-Jan-2010"
     gene	     1..2547
		     /gene="rev"
     CDS	     join(1..70,2294..2547)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AFI60338.1"
		     /db_xref="GI:385299104"
		     /translation="MSSHEREEELRKRLRLIHLLHQTNPYPTGPGTANQRRQRRRRWR
		     RRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPGALCDPTENS
		     RSPQD"
     gene	     <1..2390
		     /gene="tat"
     CDS	     join(<1..70,2294..2390)
		     /gene="tat"
		     /codon_start="3"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AFI60339.1"
		     /db_xref="GI:385299105"
		     /translation="EQSRKRRRTPKKAKANTSSASNKSIPNRTRHCQPEKAKKETVEK
		     AVATAPGLGR"
     gene	     77..2731
		     /gene="env"
     CDS	     77..2731
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AFI60340.1"
		     /db_xref="GI:385299106"
		     /translation="MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFC
		     ATKNRDTWGTTQCLPDNNDYSELALNVTESFDAWENTVTEQAIEDVWQLFETSIKPCV
		     KLSPLCITMRCNKSETDKWGLTKSSTTTTATPASTTRTTSAKIDMVNETSSCITHNNC
		     TGLEQEQMISCKFNMTGLKRDKKKEYNETWYSTDLVCEQGNSTDNESRCYMNHCNTSV
		     IQESCDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTST
		     WFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFH
		     SQPINDRPKQAWCWFGGNWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPRGGDPEVT
		     FMWTNCRGEFLYCKMNWFLNWVEDRNLTLTTQKLRERHKRNYVPCHIRQIINTWHKVG
		     KNVYLPPREGDLTCNSTVTSLIANIDWTDGNQTNITMSAEVAELYRLELGDYKLVEIT
		     PIGLAPTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGI
		     VQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHT
		     TVPWPNASLTPDWNNDTWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDV
		     FGNWFDLASWIRYIQYGIYIVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYSQQI
		     HTQQDPALPTREGKEGDGGEGGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSR
		     VYQILQPILQGLSATLRRIREVLRTELTYLQYGWSYFHEAVQAGWRSATETLAGAWGD
		     LWETLRRGGRWILAIPRRIRQGLELTLL"
     gene	     2565..>2731
		     /gene="nef"
     CDS	     2565..>2731
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="AFI60341.1"
		     /db_xref="GI:385299107"
		     /translation="MGGAISMRRSKPAGDLRQRLLRARGETYGRLLGEVEDGSSQSLG
		     GLDKGLSSLSC"
BASE COUNT	880 a	 518 c	  652 g    681 t
ORIGIN
       1 atgagcagtc acgaaagaga agaagaactc cgaaaaaggc taaggctaat acatcttctg 
      61 catcaaacaa gtaagtatgg gatgtcttgg gaatcagctg cttatcgcca tcttgctttt 
     121 aagtgtctat gggatctatt gtactcaata tgtcacagtc ttttatggtg taccagcttg 
     181 gaggaatgcg acaattcccc tcttctgtgc aaccaagaat agggatactt ggggaacaac 
     241 tcagtgccta ccagataata atgattattc agaattggcc cttaatgtta cagaaagctt 
     301 tgatgcttgg gagaatacag tcacagaaca ggcaatagag gatgtatggc aactctttga 
     361 gacctcaata aagccttgtg taaaattatc cccattatgc attactatga gatgcaataa 
     421 aagtgagaca gataaatggg gattaacaaa atcatcaaca acaacaacag caacaccagc 
     481 atcaacaaca aggacaacat cagcaaaaat agacatggtc aatgagacta gttcttgtat 
     541 aactcataat aattgcacag gcttggaaca agagcaaatg ataagctgta agttcaacat 
     601 gacagggtta aaaagagaca agaaaaagga gtacaatgaa acttggtact ctacagattt 
     661 ggtttgtgaa caagggaata gcactgataa tgaaagtaga tgctacatga atcactgtaa 
     721 cacttctgtt atccaagagt cttgtgacaa gcattattgg gatactatta gatttaggta 
     781 ttgtgcacct ccaggttatg ctttgcttag atgtaatgac acaaattatt caggctttat 
     841 gcctaaatgt tctaaggtgg tggtctcttc atgcacaagg atgatggaga cacagacttc 
     901 tacttggttt ggctttaatg gaactagagc agaaaataga acttatattt actggcatgg 
     961 tagagataat aggactataa ttagtttaaa taagtattat aatctaacaa tgaaatgtag 
    1021 aagaccagga aataagacag ttttaccagt caccattatg tctggattgg ttttccactc 
    1081 acaaccaatc aatgataggc caaagcaggc atggtgttgg tttggaggaa attggaagga 
    1141 tgcaataaaa gaggtgaagc agaccattgt caaacatccc aggtatactg gaactaacaa 
    1201 tactgataag atcaatttga cggctcctag aggaggagat ccggaagtta ccttcatgtg 
    1261 gacaaattgc agaggagagt ttctctactg taaaatgaat tggtttctaa attgggtaga 
    1321 agataggaat ctaactctaa ctacccagaa gctaagggaa cggcataaaa ggaattacgt 
    1381 gccatgtcat attagacaaa taatcaacac ttggcataaa gtaggcaaaa atgtttattt 
    1441 gcctccaaga gagggagacc tcacgtgtaa ctccacagtg accagtctca tagcaaacat 
    1501 agattggact gatggaaatc aaactaatat caccatgagt gcagaggtgg cagaactgta 
    1561 tcgattggaa ttgggagatt ataaattagt agagatcact ccaattggct tggcccccac 
    1621 agatgtgaag aggtatacta ctggtggcac ctcaagaaat aaaagagggg tctttgtgct 
    1681 agggttcttg ggttttctcg caacggcagg ttctgcaatg ggcgcggcgt cgttgacgct 
    1741 gaccgctcag tcccggactt tattggctgg gatagtgcag caacagcaac agctgttgga 
    1801 cgtggtcaag agacaacaag aattgttgcg actgaccgtc tggggaacaa agaacctcca 
    1861 gactagggtc actgccatcg agaagtactt aaaggaccag gcgcagctga atgcttgggg 
    1921 atgtgcgttt agacaagtct gccacactac tgtaccatgg ccaaatgcaa gtctaacacc 
    1981 agactggaac aatgatactt ggcaagagtg ggagcgaaag gttgacttct tggaggaaaa 
    2041 tataacggcc cttctagaag aggcacaaat tcaacaagag aagaacatgt atgaattaca 
    2101 aaagttgaat agctgggatg tgtttggcaa ttggtttgac cttgcttctt ggataaggta 
    2161 tatacaatat ggaatttata tagttgtagg agtaatactg ttaagaatag tgatctatat 
    2221 agtacaaatg ctagctaagt taaggcaggg gtataggcca gtgttctctt ccccaccctc 
    2281 ttattcccag cagatccata cccaacagga cccggcactg ccaaccagag aaggcaaaga 
    2341 aggagacggt ggagaaggcg gtggcaacag ctcctggcct tggcagatag aatatattca 
    2401 tttcctgatc cgccaactga tacgcctctt gacttggcta ttcagcaact gcagaacctt 
    2461 gctatcgaga gtataccaga tcctccaacc aatactccag gggctctctg cgaccctacg 
    2521 gagaattcga gaagtcctca ggactgaact gacctaccta caatatgggt ggagctattt 
    2581 ccatgaggcg gtccaagccg gctggagatc tgcgacagag actcttgcgg gcgcgtgggg 
    2641 agacttatgg gagactctta ggagaggtgg aagatggatc ctcgcaatcc ctaggaggat 
    2701 tagacaaggg cttgagctca ctctcttgtg a
//
last modified: Tue May 31 10:56 2022


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