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LOCUS JQ677607 2731 bp DNA linear VRL 02-MAY-2012
DEFINITION Simian immunodeficiency virus isolate 36193.wk1.P2C1 rev protein
(rev) gene, complete cds; tat protein (tat) gene, partial cds;
envelope glycoprotein (env) gene, complete cds; and nef protein
(nef) gene, partial cds
ACCESSION JQ677607
VERSION JQ677607.1 GI:385299103
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2731)
Show all sequences for reference 1
AUTHORS Ma,Z.-M., Keele,B.F., Qureshi,H., Stone,M., Desilva,V., Fritts,L.,
Lifson,J.D. and Miller,C.J.
TITLE Direct Submission
JOURNAL Submitted (14-FEB-2012) AIDS and Cancer Virus Program, National
Cancer Institute-Frederick, 1050 Boyles Street, Frederick, MD
21702, USA
REFERENCE 2
Show all sequences for reference 2
AUTHORS Ma,Z.-M., Keele,B.F., Qureshi,H., Stone,M., Desilva,V., Fritts,L.,
Lifson,J.D. and Miller,C.J.
TITLE SIVmac251 is inefficiently transmitted to rhesus macaques by penile
inoculation with a single SIVenv variant found in ramp-up phase
plasma.
JOURNAL AIDS Res. Hum. Retroviruses. 27(12); 1259-69 (2011)
PUBMED 21732792
FEATURES Location/Qualifiers
source 1..2731
/organism="Simian immunodeficiency virus"
/proviral="Simian immunodeficiency virus"
/mol_type="genomic DNA"
/strain="SIVmac251"
/isolate="36193.wk1.P2C1"
/host="Rhesus macaque"
/db_xref="taxon:11723"
/country="USA"
/collection_date="01-Jan-2010"
gene 1..2547
/gene="rev"
CDS join(1..70,2294..2547)
/gene="rev"
/codon_start="1"
/transl_table="1"
/product="rev protein"
/protein_id="AFI60338.1"
/db_xref="GI:385299104"
/translation="MSSHEREEELRKRLRLIHLLHQTNPYPTGPGTANQRRQRRRRWR
RRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPGALCDPTENS
RSPQD"
gene <1..2390
/gene="tat"
CDS join(<1..70,2294..2390)
/gene="tat"
/codon_start="3"
/transl_table="1"
/product="tat protein"
/protein_id="AFI60339.1"
/db_xref="GI:385299105"
/translation="EQSRKRRRTPKKAKANTSSASNKSIPNRTRHCQPEKAKKETVEK
AVATAPGLGR"
gene 77..2731
/gene="env"
CDS 77..2731
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AFI60340.1"
/db_xref="GI:385299106"
/translation="MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFC
ATKNRDTWGTTQCLPDNNDYSELALNVTESFDAWENTVTEQAIEDVWQLFETSIKPCV
KLSPLCITMRCNKSETDKWGLTKSSTTTTATPASTTRTTSAKIDMVNETSSCITHNNC
TGLEQEQMISCKFNMTGLKRDKKKEYNETWYSTDLVCEQGNSTDNESRCYMNHCNTSV
IQESCDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTST
WFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFH
SQPINDRPKQAWCWFGGNWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPRGGDPEVT
FMWTNCRGEFLYCKMNWFLNWVEDRNLTLTTQKLRERHKRNYVPCHIRQIINTWHKVG
KNVYLPPREGDLTCNSTVTSLIANIDWTDGNQTNITMSAEVAELYRLELGDYKLVEIT
PIGLAPTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGI
VQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHT
TVPWPNASLTPDWNNDTWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDV
FGNWFDLASWIRYIQYGIYIVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYSQQI
HTQQDPALPTREGKEGDGGEGGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSR
VYQILQPILQGLSATLRRIREVLRTELTYLQYGWSYFHEAVQAGWRSATETLAGAWGD
LWETLRRGGRWILAIPRRIRQGLELTLL"
gene 2565..>2731
/gene="nef"
CDS 2565..>2731
/gene="nef"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="AFI60341.1"
/db_xref="GI:385299107"
/translation="MGGAISMRRSKPAGDLRQRLLRARGETYGRLLGEVEDGSSQSLG
GLDKGLSSLSC"
BASE COUNT 880 a 518 c 652 g 681 t
ORIGIN
1 atgagcagtc acgaaagaga agaagaactc cgaaaaaggc taaggctaat acatcttctg
61 catcaaacaa gtaagtatgg gatgtcttgg gaatcagctg cttatcgcca tcttgctttt
121 aagtgtctat gggatctatt gtactcaata tgtcacagtc ttttatggtg taccagcttg
181 gaggaatgcg acaattcccc tcttctgtgc aaccaagaat agggatactt ggggaacaac
241 tcagtgccta ccagataata atgattattc agaattggcc cttaatgtta cagaaagctt
301 tgatgcttgg gagaatacag tcacagaaca ggcaatagag gatgtatggc aactctttga
361 gacctcaata aagccttgtg taaaattatc cccattatgc attactatga gatgcaataa
421 aagtgagaca gataaatggg gattaacaaa atcatcaaca acaacaacag caacaccagc
481 atcaacaaca aggacaacat cagcaaaaat agacatggtc aatgagacta gttcttgtat
541 aactcataat aattgcacag gcttggaaca agagcaaatg ataagctgta agttcaacat
601 gacagggtta aaaagagaca agaaaaagga gtacaatgaa acttggtact ctacagattt
661 ggtttgtgaa caagggaata gcactgataa tgaaagtaga tgctacatga atcactgtaa
721 cacttctgtt atccaagagt cttgtgacaa gcattattgg gatactatta gatttaggta
781 ttgtgcacct ccaggttatg ctttgcttag atgtaatgac acaaattatt caggctttat
841 gcctaaatgt tctaaggtgg tggtctcttc atgcacaagg atgatggaga cacagacttc
901 tacttggttt ggctttaatg gaactagagc agaaaataga acttatattt actggcatgg
961 tagagataat aggactataa ttagtttaaa taagtattat aatctaacaa tgaaatgtag
1021 aagaccagga aataagacag ttttaccagt caccattatg tctggattgg ttttccactc
1081 acaaccaatc aatgataggc caaagcaggc atggtgttgg tttggaggaa attggaagga
1141 tgcaataaaa gaggtgaagc agaccattgt caaacatccc aggtatactg gaactaacaa
1201 tactgataag atcaatttga cggctcctag aggaggagat ccggaagtta ccttcatgtg
1261 gacaaattgc agaggagagt ttctctactg taaaatgaat tggtttctaa attgggtaga
1321 agataggaat ctaactctaa ctacccagaa gctaagggaa cggcataaaa ggaattacgt
1381 gccatgtcat attagacaaa taatcaacac ttggcataaa gtaggcaaaa atgtttattt
1441 gcctccaaga gagggagacc tcacgtgtaa ctccacagtg accagtctca tagcaaacat
1501 agattggact gatggaaatc aaactaatat caccatgagt gcagaggtgg cagaactgta
1561 tcgattggaa ttgggagatt ataaattagt agagatcact ccaattggct tggcccccac
1621 agatgtgaag aggtatacta ctggtggcac ctcaagaaat aaaagagggg tctttgtgct
1681 agggttcttg ggttttctcg caacggcagg ttctgcaatg ggcgcggcgt cgttgacgct
1741 gaccgctcag tcccggactt tattggctgg gatagtgcag caacagcaac agctgttgga
1801 cgtggtcaag agacaacaag aattgttgcg actgaccgtc tggggaacaa agaacctcca
1861 gactagggtc actgccatcg agaagtactt aaaggaccag gcgcagctga atgcttgggg
1921 atgtgcgttt agacaagtct gccacactac tgtaccatgg ccaaatgcaa gtctaacacc
1981 agactggaac aatgatactt ggcaagagtg ggagcgaaag gttgacttct tggaggaaaa
2041 tataacggcc cttctagaag aggcacaaat tcaacaagag aagaacatgt atgaattaca
2101 aaagttgaat agctgggatg tgtttggcaa ttggtttgac cttgcttctt ggataaggta
2161 tatacaatat ggaatttata tagttgtagg agtaatactg ttaagaatag tgatctatat
2221 agtacaaatg ctagctaagt taaggcaggg gtataggcca gtgttctctt ccccaccctc
2281 ttattcccag cagatccata cccaacagga cccggcactg ccaaccagag aaggcaaaga
2341 aggagacggt ggagaaggcg gtggcaacag ctcctggcct tggcagatag aatatattca
2401 tttcctgatc cgccaactga tacgcctctt gacttggcta ttcagcaact gcagaacctt
2461 gctatcgaga gtataccaga tcctccaacc aatactccag gggctctctg cgaccctacg
2521 gagaattcga gaagtcctca ggactgaact gacctaccta caatatgggt ggagctattt
2581 ccatgaggcg gtccaagccg gctggagatc tgcgacagag actcttgcgg gcgcgtgggg
2641 agacttatgg gagactctta ggagaggtgg aagatggatc ctcgcaatcc ctaggaggat
2701 tagacaaggg cttgagctca ctctcttgtg a
//
last modified: Tue May 31 10:56 2022