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LOCUS	    JQ625603		    1302 bp    RNA     linear	VRL 09-MAR-2013
DEFINITION  HIV-1 isolate KMR14_520043382202 from Uganda pol protein (pol)
	    gene, partial cds
ACCESSION   JQ625603
VERSION     JQ625603.1 GI:459163914
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
	    Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
	    Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
	    Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
	    Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
	    Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
	    Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
	    Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
	    Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
	    Celum,C.
  CONSRTM   Partners PrEP Study Team
  TITLE     Antiretroviral prophylaxis for HIV prevention in heterosexual men
	    and women
  JOURNAL   N. Engl. J. Med. 367 (5), 399-410 (2012)
  PUBMED    22784037
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
	    Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
	    Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
	    Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
	    Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
	    Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
	    Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
	    Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
	    Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
	    Celum,C.
  CONSRTM   Partners PrEP Study Team
  TITLE     Direct Submission
  JOURNAL   Submitted (06-FEB-2012) Center for Childhood Infections and
	    Prematurity, Seattle Children''s Research Institute, 1900 9th Ave,
	    Seattle, WA 98105, USA
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="KMR14_520043382202"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Uganda"
		     /collection_date="2010"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AGG40477.1"
		     /db_xref="GI:459163915"
		     /translation="PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEDINLPGKWKP
		     KMIGGIGGFIKVKQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTDMEKEGKISKIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LYEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQHSMTKILEPFRSKNPE
		     IIIYQYMDDLYVGSDLEIGQHRTKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQAIQLPEKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKCIRGTKALTEIV
		     PLTEEAELELAENREILKAPVHGVYYDPSKDLIAEIQKQGQD"
BASE COUNT	522 a	 213 c	  277 g    290 t
ORIGIN
       1 cctcaaatca ctctttggca acgacccctt gtcacagtaa aaataggggg acagctaaaa 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagacataaa tttgccaggg 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttca tcaaggtaaa acagtatgat 
     181 cagatactta tagaaatttg tggaaaaaag gctataggta cagtcttggt aggacctaca 
     241 cctgtgaaca taattggaag aaatatgttg acccagattg gttgtacttt aaatttccca 
     301 ataagtccta ttgagactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagaaatttg tacagatatg 
     421 gaaaaggaag gaaaaatttc aaaaataggg ccagaaaatc catacaatac tccaatattt 
     481 gctataaaga aaaaagatag cactaaatgg agaaagttag tagatttcag agagctcaat 
     541 aaaagaacac aagacttttg ggaagttcaa ttaggaatac cgcatccagc gggcctaaaa 
     601 aagaaaaaat cagtaacagt actagatgtg ggggacgcat atttttcagt tcccttatat 
     661 gaagacttta gaaagtatac agcgttcacc atacctagta caaacaatga gacaccagga 
     721 attaggtatc agtacaatgt gcttccacag ggatggaaag gatcgccagc gatattccag 
     781 cacagcatga caaaaatttt agagcccttt agatcaaaaa atccagagat aatcatctat 
     841 caatacatgg atgacttgta tgtaggatct gatttagaaa tagggcagca tagaacaaaa 
     901 atagaagagt taagagctca tctgttgagc tggggattta ctacaccaga caaaaagcat 
     961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgataa atggacagta 
    1021 caggctatac aactgccaga aaaagaaagc tggactgtca atgatataca gaagttagtg 
    1081 gggaaattaa attgggcaag ccagatttat ccaggaatta aagtaaaaca attatgcaag 
    1141 tgcattaggg gaaccaaagc actgacagaa atagtaccac tgacagaaga agcagaatta 
    1201 gaactggcag aaaacaggga aattctaaaa gcaccagtac atggagtgta ttatgaccca 
    1261 tcaaaagact taatagcaga aatacagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022


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