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LOCUS JQ625603 1302 bp RNA linear VRL 09-MAR-2013
DEFINITION HIV-1 isolate KMR14_520043382202 from Uganda pol protein (pol)
gene, partial cds
ACCESSION JQ625603
VERSION JQ625603.1 GI:459163914
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
Celum,C.
CONSRTM Partners PrEP Study Team
TITLE Antiretroviral prophylaxis for HIV prevention in heterosexual men
and women
JOURNAL N. Engl. J. Med. 367 (5), 399-410 (2012)
PUBMED 22784037
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
Celum,C.
CONSRTM Partners PrEP Study Team
TITLE Direct Submission
JOURNAL Submitted (06-FEB-2012) Center for Childhood Infections and
Prematurity, Seattle Children''s Research Institute, 1900 9th Ave,
Seattle, WA 98105, USA
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="KMR14_520043382202"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Uganda"
/collection_date="2010"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AGG40477.1"
/db_xref="GI:459163915"
/translation="PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEDINLPGKWKP
KMIGGIGGFIKVKQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTDMEKEGKISKIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LYEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQHSMTKILEPFRSKNPE
IIIYQYMDDLYVGSDLEIGQHRTKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQAIQLPEKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKCIRGTKALTEIV
PLTEEAELELAENREILKAPVHGVYYDPSKDLIAEIQKQGQD"
BASE COUNT 522 a 213 c 277 g 290 t
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtcacagtaa aaataggggg acagctaaaa
61 gaagctctat tagatacagg agcagatgat acagtattag aagacataaa tttgccaggg
121 aaatggaaac caaaaatgat agggggaatt ggaggtttca tcaaggtaaa acagtatgat
181 cagatactta tagaaatttg tggaaaaaag gctataggta cagtcttggt aggacctaca
241 cctgtgaaca taattggaag aaatatgttg acccagattg gttgtacttt aaatttccca
301 ataagtccta ttgagactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagaaatttg tacagatatg
421 gaaaaggaag gaaaaatttc aaaaataggg ccagaaaatc catacaatac tccaatattt
481 gctataaaga aaaaagatag cactaaatgg agaaagttag tagatttcag agagctcaat
541 aaaagaacac aagacttttg ggaagttcaa ttaggaatac cgcatccagc gggcctaaaa
601 aagaaaaaat cagtaacagt actagatgtg ggggacgcat atttttcagt tcccttatat
661 gaagacttta gaaagtatac agcgttcacc atacctagta caaacaatga gacaccagga
721 attaggtatc agtacaatgt gcttccacag ggatggaaag gatcgccagc gatattccag
781 cacagcatga caaaaatttt agagcccttt agatcaaaaa atccagagat aatcatctat
841 caatacatgg atgacttgta tgtaggatct gatttagaaa tagggcagca tagaacaaaa
901 atagaagagt taagagctca tctgttgagc tggggattta ctacaccaga caaaaagcat
961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgataa atggacagta
1021 caggctatac aactgccaga aaaagaaagc tggactgtca atgatataca gaagttagtg
1081 gggaaattaa attgggcaag ccagatttat ccaggaatta aagtaaaaca attatgcaag
1141 tgcattaggg gaaccaaagc actgacagaa atagtaccac tgacagaaga agcagaatta
1201 gaactggcag aaaacaggga aattctaaaa gcaccagtac atggagtgta ttatgaccca
1261 tcaaaagact taatagcaga aatacagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022