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LOCUS JQ625601 1302 bp RNA linear VRL 09-MAR-2013
DEFINITION HIV-1 isolate LFI192_520065512202 from Uganda pol protein (pol)
gene, partial cds
ACCESSION JQ625601
VERSION JQ625601.1 GI:459163910
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
Celum,C.
CONSRTM Partners PrEP Study Team
TITLE Antiretroviral prophylaxis for HIV prevention in heterosexual men
and women
JOURNAL N. Engl. J. Med. 367 (5), 399-410 (2012)
PUBMED 22784037
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
Celum,C.
CONSRTM Partners PrEP Study Team
TITLE Direct Submission
JOURNAL Submitted (06-FEB-2012) Center for Childhood Infections and
Prematurity, Seattle Children''s Research Institute, 1900 9th Ave,
Seattle, WA 98105, USA
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="LFI192_520065512202"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Uganda"
/collection_date="2010"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AGG40475.1"
/db_xref="GI:459163911"
/translation="PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEDINLPGKWKP
RMIGGIGGFIKVKQYDQISIEICGKRAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVPVTLKPGMDGPRIKQWPLTEEKIKALTEICKEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRSQNPG
IIIYQYMDDLYVGSDLEIGQHREKVEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQSIQLPDKDSWTVNDIQKLVGKLNWASQIYSGIKVKQLCKLLRGAKALTDVV
VLTKEAELELAENREILKDPVHGVYYDPSKDLIAEIQKQGQD"
BASE COUNT 510 a 206 c 281 g 305 t
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtcacagtaa aaataggagg acagctaaag
61 gaggctttat tagatacagg agcagatgat acagtattgg aggatataaa tttgccagga
121 aaatggaaac caagaatgat agggggaatt ggaggtttta tcaaagtaaa acagtatgat
181 caaataagta tagaaatttg tggaaaaagg gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag gaatatgttg actcagattg gttgtacttt aaatttccca
301 attagtccta ttgaaactgt accagtaaca ttaaaaccag gaatggatgg cccaaggatt
361 aaacagtggc cattgacaga agaaaaaata aaagcattaa cagaaatttg taaagagatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac cccagtattt
481 gctataaaga aaaaagatag cactaaatgg aggaaattag tagactttag agagctcaat
541 aaaagaactc aggacttctg ggaagttcaa ttaggaatac cgcatcccgc aggattaaaa
601 aagaaaaaat cagtaacagt actagatgtg ggagacgcat atttttcagt tcctttagac
661 aaagacttta gaaagtatac tgcattcacc atacctagta taaacaatga gacaccagga
721 atcaggtatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccag
781 agtagcatga caaaaatctt agagcccttt agatcacaaa atccagggat aattatctat
841 caatacatgg atgacttgta tgtaggatct gatttagaaa tagggcagca tagagaaaaa
901 gtagaggagt tgagagctca tctattgagt tggggattta ctacaccaga caaaaagcat
961 cagaaagaac ctccatttct ttggatggga tatgaactcc atcctgacaa atggacagtc
1021 cagtctatac agctgccaga caaagacagt tggactgtca atgatataca gaaattagta
1081 ggaaaactaa attgggcaag tcaaatttat tcagggatta aagtaaagca actgtgtaaa
1141 ctcctcagag gagccaaggc attaacagat gtggtagtac tgactaagga agcagaatta
1201 gaattggcag agaacaggga gattctaaaa gaccctgtgc atggagtata ttatgaccca
1261 tcaaaagact taatagcaga aatacagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022