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LOCUS	    JQ625601		    1302 bp    RNA     linear	VRL 09-MAR-2013
DEFINITION  HIV-1 isolate LFI192_520065512202 from Uganda pol protein (pol)
	    gene, partial cds
ACCESSION   JQ625601
VERSION     JQ625601.1 GI:459163910
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
	    Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
	    Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
	    Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
	    Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
	    Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
	    Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
	    Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
	    Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
	    Celum,C.
  CONSRTM   Partners PrEP Study Team
  TITLE     Antiretroviral prophylaxis for HIV prevention in heterosexual men
	    and women
  JOURNAL   N. Engl. J. Med. 367 (5), 399-410 (2012)
  PUBMED    22784037
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
	    Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
	    Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
	    Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
	    Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
	    Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
	    Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
	    Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
	    Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
	    Celum,C.
  CONSRTM   Partners PrEP Study Team
  TITLE     Direct Submission
  JOURNAL   Submitted (06-FEB-2012) Center for Childhood Infections and
	    Prematurity, Seattle Children''s Research Institute, 1900 9th Ave,
	    Seattle, WA 98105, USA
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="LFI192_520065512202"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Uganda"
		     /collection_date="2010"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AGG40475.1"
		     /db_xref="GI:459163911"
		     /translation="PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEDINLPGKWKP
		     RMIGGIGGFIKVKQYDQISIEICGKRAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETVPVTLKPGMDGPRIKQWPLTEEKIKALTEICKEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRSQNPG
		     IIIYQYMDDLYVGSDLEIGQHREKVEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQSIQLPDKDSWTVNDIQKLVGKLNWASQIYSGIKVKQLCKLLRGAKALTDVV
		     VLTKEAELELAENREILKDPVHGVYYDPSKDLIAEIQKQGQD"
BASE COUNT	510 a	 206 c	  281 g    305 t
ORIGIN
       1 cctcaaatca ctctttggca acgacccctt gtcacagtaa aaataggagg acagctaaag 
      61 gaggctttat tagatacagg agcagatgat acagtattgg aggatataaa tttgccagga 
     121 aaatggaaac caagaatgat agggggaatt ggaggtttta tcaaagtaaa acagtatgat 
     181 caaataagta tagaaatttg tggaaaaagg gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag gaatatgttg actcagattg gttgtacttt aaatttccca 
     301 attagtccta ttgaaactgt accagtaaca ttaaaaccag gaatggatgg cccaaggatt 
     361 aaacagtggc cattgacaga agaaaaaata aaagcattaa cagaaatttg taaagagatg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac cccagtattt 
     481 gctataaaga aaaaagatag cactaaatgg aggaaattag tagactttag agagctcaat 
     541 aaaagaactc aggacttctg ggaagttcaa ttaggaatac cgcatcccgc aggattaaaa 
     601 aagaaaaaat cagtaacagt actagatgtg ggagacgcat atttttcagt tcctttagac 
     661 aaagacttta gaaagtatac tgcattcacc atacctagta taaacaatga gacaccagga 
     721 atcaggtatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccag 
     781 agtagcatga caaaaatctt agagcccttt agatcacaaa atccagggat aattatctat 
     841 caatacatgg atgacttgta tgtaggatct gatttagaaa tagggcagca tagagaaaaa 
     901 gtagaggagt tgagagctca tctattgagt tggggattta ctacaccaga caaaaagcat 
     961 cagaaagaac ctccatttct ttggatggga tatgaactcc atcctgacaa atggacagtc 
    1021 cagtctatac agctgccaga caaagacagt tggactgtca atgatataca gaaattagta 
    1081 ggaaaactaa attgggcaag tcaaatttat tcagggatta aagtaaagca actgtgtaaa 
    1141 ctcctcagag gagccaaggc attaacagat gtggtagtac tgactaagga agcagaatta 
    1201 gaattggcag agaacaggga gattctaaaa gaccctgtgc atggagtata ttatgaccca 
    1261 tcaaaagact taatagcaga aatacagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022


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