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LOCUS JQ609754 2616 bp DNA linear VRL 25-MAR-2012
DEFINITION HIV-1 isolate 45_01D17 from USA envelope glycoprotein (env) gene,
complete cds
ACCESSION JQ609754
VERSION JQ609754.1 GI:380718244
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2616)
Show all sequences for reference 1
AUTHORS Wu,X., Wang,C., O'Dell,S., Li,Y., Keele,B.F., Yang,Z., Imamichi,H.,
Doria-Rose,N., Hoxie,J.A., Connors,M., Shaw,G.M., Wyatt,R.T. and
Mascola,J.R.
TITLE Selection Pressure on HIV-1 Envelope by Broadly Neutralizing
Antibodies to the Conserved CD4-Binding Site.
JOURNAL J. Virol.. 86(10); 5844-56 (2012)
PUBMED 22419808
REFERENCE 2 (bases 1 to 2616)
Show all sequences for reference 2
AUTHORS Wu,X., Wang,C., O'Dell,S., Li,Y., Keele,B., Yang,Z., Imamichi,H.,
Doria-Rose,N., Hoxie,J., Connors,M., Shaw,G., Wyatt,R. and
Mascola,J.
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2012) VRC / NIAID, NIH, 40 Convent Drive,
Bethesda, MD 20910, USA
FEATURES Location/Qualifiers
source 1..2616
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="45_01D17"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="08-Feb-2001"
/note="subtype: B"
gene 1..2616
/gene="env"
CDS 1..2616
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AFE02320.1"
/db_xref="GI:380718245"
/translation="MRVMGIRKNCQRLWKGGTWFLGILMICSAAEQLWVTVYYGVPVW
KEANTTLFCASDAKAYSTERHNVWATHACVPTDPNPQEVVLENVTEKFNMWENNMVEQ
MHEDIISLWDQSLQPCVKLTPLCVTLNCIDYVENTNKATNGTSTATPSPTTTTTNSSG
GAREEREIKNCTFNITTGMRDKVQKEYALLYKFDIEPIKDDSDKTNTTNTNYRLISCN
TSVITQACPKISFEPIPIHYCAPAGFAILKCNDKKFNGTGKCANVSTVQCTHGIRPVV
STQLLLNGSLAEEEIIIRSRNLSENDDIIIVQLSKTVLINCTRPNNNTRRSIPMGPGK
AFFTTGQVIGNIRQAHCNISKTDWNNTLRQVAIKLRKLFNKTIVFNQSTGGDPEIVMH
SFNCGGEFFYCNTTQLFNSTWHGNETEDTKDNKTITLPCRIKQIVNRWQEVGKAMYAP
PIEGLIRCSSNITGLLLTRDGGNITNENTTETFRPGGGNMRDNWRSELYKYKVVKIEP
LGVAPTKAKRRVVQREKRAAGIGALFLGFLGAAGSTMGAASLTLTVQARLLLSGIVQQ
QNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTTVP
WNGSWSNKTYDAIWDNMTWMDWEREIENYTGVIYDLIEQSQNQQEKNEQELLALDKWA
SLWNWFDITKWLWYIKIFIMIVGGLIGLRIIFTVLSIVNRVRQGYSPLSFQTHLPAPR
GPDRPDGIEEEGGEQDRDRSGRLATGFLAIVWVDLRSLCLFSYHRLRDLLLIVTRIVE
LLGRRGWEILKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEIFQRAFRAIL
NIPTRIRQGLERALL"
BASE COUNT 917 a 453 c 610 g 636 t
ORIGIN
1 atgagagtga tggggatcag gaagaactgt cagcgcttgt ggaaaggggg cacttggttc
61 ctagggatat tgatgatctg tagtgctgca gaacaattgt gggtcacagt ctattatggg
121 gtacctgtgt ggaaagaagc aaacaccact ctattttgtg catcagatgc taaagcatat
181 agtacagaga gacataatgt ttgggccaca catgcctgcg tacccacaga ccccaaccca
241 caagaagtag tattggaaaa tgtgacagaa aagtttaaca tgtgggaaaa caacatggta
301 gaacagatgc atgaggatat aatcagttta tgggatcaaa gcctacagcc atgtgtaaaa
361 ttaacccccc tctgtgttac tttaaattgc attgattatg tggagaatac taataaggcc
421 actaatggta cttctaccgc tacccctagt cctaccacta cgaccactaa tagtagcggg
481 ggagcgaggg aagaaagaga aataaaaaac tgcactttta atatcaccac aggcatgaga
541 gataaggtac agaaagaata tgcattattg tataagtttg atatagaacc aataaaggat
601 gatagtgata agactaatac tactaatacc aactataggt tgataagttg taacacctca
661 gtcattacac aggcctgtcc aaagatatcc tttgagccaa ttcccataca ttattgtgcc
721 ccggctggtt ttgcgattct aaagtgtaat gataaaaagt tcaatggaac aggaaaatgt
781 gcaaatgtca gtacagtaca atgcacacat ggaattaggc cagtagtatc aactcaactg
841 ctgttaaatg gcagtctagc agaagaagag ataataataa gatctagaaa tctctcggaa
901 aatgatgaca tcataatagt acagctgagt aaaactgtat taattaattg tacaagaccc
961 aacaacaata caagaagaag tatacctatg ggaccaggga aagcattttt tacaacagga
1021 caagtaatag gaaatataag acaagcacat tgtaacatta gtaaaacaga ttggaataac
1081 actttaagac aggtagcaat aaaattaaga aaactcttta ataaaacaat agtctttaac
1141 caatccacag gaggggaccc agaaattgta atgcacagtt ttaattgtgg aggggaattt
1201 ttctactgta atacaacaca actgtttaat agcacttggc atgggaatga gactgaagac
1261 actaaagata ataaaacaat tacactccca tgcagaataa aacaaattgt aaacagatgg
1321 caggaagtag gaaaagcaat gtatgcccct cccatcgaag gactaattag atgttcatca
1381 aatattactg ggctgctatt aacaagagat ggtggtaata tcacgaacga gaatactact
1441 gagaccttca gacctggagg aggaaatatg agggataatt ggagaagtga attatataaa
1501 tataaagtgg taaaaattga accattagga gtagcaccca ccaaggcaaa aagaagagtg
1561 gtgcaaagag aaaaaagagc agcgggaata ggagctttgt tccttgggtt cttgggagca
1621 gcaggaagca ctatgggcgc agcatcactg acgctgacgg tacaggccag actattattg
1681 tctggtatag tgcaacagca gaataatttg ctgagagcta ttgaggcgca acaacatctg
1741 ttgcaactca cagtctgggg catcaagcag ctccaggcaa gagtcctggc tgtggaaaga
1801 tacctaaggg atcaacagct cctggggatt tggggttgct ctggaaaact catttgcacc
1861 actactgtgc cttggaatgg gagttggagt aataaaactt atgatgcaat ttgggataac
1921 atgacctgga tggattggga aagagaaatt gaaaattaca caggcgtaat atatgactta
1981 attgaacaat cgcaaaacca gcaagaaaag aatgaacaag aattattggc attagataaa
2041 tgggcaagtt tgtggaattg gtttgacata acaaaatggc tgtggtacat aaaaatattc
2101 ataatgatag taggaggctt aataggttta agaataattt ttactgtact ttctatagtg
2161 aatagagtta ggcagggata ctcaccatta tcgtttcaga cccacctccc agccccgagg
2221 ggacccgaca ggcccgacgg aatcgaagaa gaaggtggag agcaagacag agacagatcc
2281 ggtcgtttag caactggatt cttagcaatt gtctgggtcg acctgcggag cctgtgcctc
2341 ttcagctacc accgcttgag agacttactc ttgattgtga cgaggattgt ggaacttctg
2401 ggacgcaggg ggtgggaaat cctcaaatat tggtggaatc tcctacagta ttggagtcag
2461 gaactaaaga atagcgctgt tagcttgctt aatgccacag ccatagcagt agctgaaggg
2521 acagataggg ttatagaaat atttcaaaga gcttttagag ctattctcaa catacctact
2581 agaataagac agggcttgga aagggctttg ctataa
//
last modified: Tue May 31 10:56 2022