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LOCUS JQ438111 520 bp DNA linear VRL 04-JUN-2012
DEFINITION HIV-1 isolate LCPIS00358 from Senegal envelope glycoprotein (env)
gene, partial cds
ACCESSION JQ438111
VERSION JQ438111.1 GI:388817086
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 520)
Show all sequences for reference 1
AUTHORS Jennes,W., Kyongo,J.K., Vanhommerig,E., Camara,M., Coppens,S.,
Seydi,M., Mboup,S., Heyndrickx,L. and Kestens,L.
TITLE Molecular Epidemiology of HIV-1 Transmission in a Cohort of HIV-1
Concordant Heterosexual Couples from Dakar, Senegal
JOURNAL PLoS ONE 7 (5), E37402 (2012)
PUBMED 22615999
REFERENCE 2 (bases 1 to 520)
Show all sequences for reference 2
AUTHORS Jennes,W., Kyongo,J.K., Vanhommerig,E., Camara,M., Coppens,S.,
Seydi,M., Mboup,S., Heyndrickx,L. and Kestens,L.
TITLE Direct Submission
JOURNAL Submitted (24-JAN-2012) Department of Biomedical Sciences,
Institute of Tropical Medicine, Nationalestraat 155, Antwerp,
Antwerp 2000, Belgium
FEATURES Location/Qualifiers
source 1..520
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="LCPIS00358"
/isolation_source="peripheral blood mononuclear cells"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Senegal: Dakar"
/collection_date="09-Nov-2006"
gene <1..>520
/gene="env"
CDS <1..>520
/gene="env"
/note="gp41"
/codon_start="3"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AFK78983.1"
/db_xref="GI:388817087"
/translation="QLLSGIVQQQSNLLRAIEAQQHMLQLTVXGIKQLQARVLAIERY
LKDQQFLGLWGCSGKVICTTAVPWNSSWSNKSEADIWNNMTWMQWDKEIXXYXKTIXE
LLEXSXXQQEQNEKDLLALDXWBXLXSWFXITNWLWYIXIFIMIXGGLIXLXIXFAXI
SVXNXVXQGYSP"
BASE COUNT 165 a 82 c 111 g 130 t 32 other
ORIGIN
1 gacaattgct gtctggtata gtgcaacagc aaagcaattt gctgagagct atagaggcgc
61 aacagcatat gttgcaactc acagtckggg gcattaagca gctccaggca agagtcctgg
121 ctatcgaaag atacctaaag gatcaacagt tcctaggact ttggggctgc tctggaaaag
181 tcatctgcac cactgctgtg ccttggaact ccagttggag taataaatct gaagcagata
241 tttggaataa catgacctgg atgcagtggg ataaagaaat tarwmmatac wcmaaaacaa
301 tayatgagtt gcttgaaraa tcwcawmacc arcaggaaca aaatgaaaaa gatttattag
361 cmttggacaa stggracast ctawggagtt ggtttaryat aacaaattgg ctgtggtata
421 taakaatatt cataatgata gkaggaggct tgatagrttt aaraatastt tttgctgyma
481 tctctgtart raatasagtt asgcagggat actcwccttt
//
last modified: Tue May 31 10:56 2022