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LOCUS JQ438091 520 bp DNA linear VRL 04-JUN-2012
DEFINITION HIV-1 isolate LCPIS00203 from Senegal envelope glycoprotein (env)
gene, partial cds
ACCESSION JQ438091
VERSION JQ438091.1 GI:388817046
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 520)
Show all sequences for reference 1
AUTHORS Jennes,W., Kyongo,J.K., Vanhommerig,E., Camara,M., Coppens,S.,
Seydi,M., Mboup,S., Heyndrickx,L. and Kestens,L.
TITLE Molecular Epidemiology of HIV-1 Transmission in a Cohort of HIV-1
Concordant Heterosexual Couples from Dakar, Senegal
JOURNAL PLoS ONE 7 (5), E37402 (2012)
PUBMED 22615999
REFERENCE 2 (bases 1 to 520)
Show all sequences for reference 2
AUTHORS Jennes,W., Kyongo,J.K., Vanhommerig,E., Camara,M., Coppens,S.,
Seydi,M., Mboup,S., Heyndrickx,L. and Kestens,L.
TITLE Direct Submission
JOURNAL Submitted (24-JAN-2012) Department of Biomedical Sciences,
Institute of Tropical Medicine, Nationalestraat 155, Antwerp,
Antwerp 2000, Belgium
FEATURES Location/Qualifiers
source 1..520
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="LCPIS00203"
/isolation_source="peripheral blood mononuclear cells"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Senegal: Dakar"
/collection_date="02-Mar-2006"
gene <1..>520
/gene="env"
CDS <1..>520
/gene="env"
/note="gp41"
/codon_start="3"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AFK78963.1"
/db_xref="GI:388817047"
/translation="QLLSGIVQQQSNXLRAIEAQQHMLRLTVWGIKQLQARVLALERY
LKDQQLLGIWGCSGKLICTTNVPWNSSWSNXXHDDIWXNXTWLZWDKEISNYSDIIYD
LLEKSQNQQEKNEQDLLALDKWSSLWSWFXITNWLWYIKIFXIIVGGLIGLRIVFXVL
TIINRVRQGYSP"
BASE COUNT 174 a 79 c 115 g 136 t 16 other
ORIGIN
1 gacaattatt gtctggtata gtgcaacagc aaagtaattt kytgagggct atagaggctc
61 aacaacatat gttgagactc acggtctggg gcattaaaca gctccaggca agagtcctgg
121 ctctggaaag atacctaaag gatcaacagc tcctaggaat ttggggctgc tctggaaaac
181 tcatctgcac cactaatgta ccytggaayt ctagttggag taatarawcc catgatgaca
241 tatgggryaa ymygacctgg ctgsaatggg ataaagaaat tagcaattay tcagatataa
301 tatatgatct acttgaaaaa tcgcagaacc agcaggaaaa gaatgaacaa gacttgttgg
361 cattggacaa atggtcaagc ctgtggagtt ggtttarcat aacaaattgg ctgtggtata
421 taaaaatatt trtaataata gtaggaggat taataggctt aagaatagtt tttkctgtac
481 ttactataat aaatagagtt aggcagggat actcaccttt
//
last modified: Tue May 31 10:56 2022