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LOCUS JQ438089 520 bp DNA linear VRL 04-JUN-2012
DEFINITION HIV-1 isolate LCPIS00201 from Senegal envelope glycoprotein (env)
gene, partial cds
ACCESSION JQ438089
VERSION JQ438089.1 GI:388817042
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 520)
Show all sequences for reference 1
AUTHORS Jennes,W., Kyongo,J.K., Vanhommerig,E., Camara,M., Coppens,S.,
Seydi,M., Mboup,S., Heyndrickx,L. and Kestens,L.
TITLE Molecular Epidemiology of HIV-1 Transmission in a Cohort of HIV-1
Concordant Heterosexual Couples from Dakar, Senegal
JOURNAL PLoS ONE 7 (5), E37402 (2012)
PUBMED 22615999
REFERENCE 2 (bases 1 to 520)
Show all sequences for reference 2
AUTHORS Jennes,W., Kyongo,J.K., Vanhommerig,E., Camara,M., Coppens,S.,
Seydi,M., Mboup,S., Heyndrickx,L. and Kestens,L.
TITLE Direct Submission
JOURNAL Submitted (24-JAN-2012) Department of Biomedical Sciences,
Institute of Tropical Medicine, Nationalestraat 155, Antwerp,
Antwerp 2000, Belgium
FEATURES Location/Qualifiers
source 1..520
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="LCPIS00201"
/isolation_source="peripheral blood mononuclear cells"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Senegal: Dakar"
/collection_date="02-Mar-2006"
gene <1..>520
/gene="env"
CDS <1..>520
/gene="env"
/note="gp41"
/codon_start="3"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AFK78961.1"
/db_xref="GI:388817043"
/translation="QLLSGIVQQQSXLLRAIEAQQQMLRLTVWGIKQLQARVLALERY
LGDQQLLGLWGCSGKIICATNVPWNSTWSNKNYTDIWDNMTWLQWDKEVSNYTDIIYX
LLEESQTQQEQNEKDLLELDKWDSLWXWFNITNWLWYIKIFIMIVGGLIGLRIVFSVL
AIINRVRQGYSP"
BASE COUNT 168 a 84 c 119 g 139 t 10 other
ORIGIN
1 gacaattatt gtctggtata gtgcaacagc agagcamyct gctgagagct atagaggctc
61 aacaacagat gttgagactc acagtctggg gcattaaaca gctccaggca agagtcctgg
121 ctctggaaag atacctaggt gatcaacagc tcctaggact ttggggwtgc tctggaaaaa
181 tcatctgtgc cactaatgty ccttggaact ctacttggag taataaaaat tatactgaca
241 tatgggataa catgacctgg ctgcaatggg ataaagaagt tagcaattac acagacataa
301 tatatkctct acttgargaa tcgcagaccc agcaggaaca gaatgaaaaa gacttattgg
361 aattggacaa gtgggacagc ctgtggartt ggtttaacat aacaaattgg ctrtggtata
421 taaaratatt tataatgata gtaggaggtt trataggttt aagaatagtt ttttctgtgc
481 ttgctataat aaatagagtt aggcagggat actcaccttt
//
last modified: Tue May 31 10:56 2022