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LOCUS	    JQ438089		     520 bp    DNA     linear	VRL 04-JUN-2012
DEFINITION  HIV-1 isolate LCPIS00201 from Senegal envelope glycoprotein (env)
	    gene, partial cds
ACCESSION   JQ438089
VERSION     JQ438089.1 GI:388817042
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 520)
            Show all sequences for reference 1
  AUTHORS   Jennes,W., Kyongo,J.K., Vanhommerig,E., Camara,M., Coppens,S.,
	    Seydi,M., Mboup,S., Heyndrickx,L. and Kestens,L.
  TITLE     Molecular Epidemiology of HIV-1 Transmission in a Cohort of HIV-1
	    Concordant Heterosexual Couples from Dakar, Senegal
  JOURNAL   PLoS ONE 7 (5), E37402 (2012)
  PUBMED    22615999
REFERENCE   2 (bases 1 to 520)
            Show all sequences for reference 2
  AUTHORS   Jennes,W., Kyongo,J.K., Vanhommerig,E., Camara,M., Coppens,S.,
	    Seydi,M., Mboup,S., Heyndrickx,L. and Kestens,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2012) Department of Biomedical Sciences,
	    Institute of Tropical Medicine, Nationalestraat 155, Antwerp,
	    Antwerp 2000, Belgium
FEATURES             Location/Qualifiers
     source	     1..520
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="LCPIS00201"
		     /isolation_source="peripheral blood mononuclear cells"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Senegal: Dakar"
		     /collection_date="02-Mar-2006"
     gene	     <1..>520
		     /gene="env"
     CDS	     <1..>520
		     /gene="env"
		     /note="gp41"
		     /codon_start="3"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AFK78961.1"
		     /db_xref="GI:388817043"
		     /translation="QLLSGIVQQQSXLLRAIEAQQQMLRLTVWGIKQLQARVLALERY
		     LGDQQLLGLWGCSGKIICATNVPWNSTWSNKNYTDIWDNMTWLQWDKEVSNYTDIIYX
		     LLEESQTQQEQNEKDLLELDKWDSLWXWFNITNWLWYIKIFIMIVGGLIGLRIVFSVL
		     AIINRVRQGYSP"
BASE COUNT	168 a	  84 c	  119 g    139 t     10 other
ORIGIN
       1 gacaattatt gtctggtata gtgcaacagc agagcamyct gctgagagct atagaggctc 
      61 aacaacagat gttgagactc acagtctggg gcattaaaca gctccaggca agagtcctgg 
     121 ctctggaaag atacctaggt gatcaacagc tcctaggact ttggggwtgc tctggaaaaa 
     181 tcatctgtgc cactaatgty ccttggaact ctacttggag taataaaaat tatactgaca 
     241 tatgggataa catgacctgg ctgcaatggg ataaagaagt tagcaattac acagacataa 
     301 tatatkctct acttgargaa tcgcagaccc agcaggaaca gaatgaaaaa gacttattgg 
     361 aattggacaa gtgggacagc ctgtggartt ggtttaacat aacaaattgg ctrtggtata 
     421 taaaratatt tataatgata gtaggaggtt trataggttt aagaatagtt ttttctgtgc 
     481 ttgctataat aaatagagtt aggcagggat actcaccttt 
//
last modified: Tue May 31 10:56 2022


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