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LOCUS	    JQ282089		    1123 bp    DNA     linear	VRL 18-JAN-2012
DEFINITION  HIV-2 isolate 34306 from Portugal pol protein (pol) gene, partial
	    cds
ACCESSION   JQ282089
VERSION     JQ282089.1 GI:372124850
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 2 (HIV-2)
  ORGANISM  Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1123)
            Show all sequences for reference 1
  AUTHORS   Faria,N.R., Hodges-Mameletzis,I., Silva,J.C., Rodes,B., Erasmus,S.,
	    Paolucci,S., Ruelle,J., Pieniazek,D., Taveira,N., Trevino,A.,
	    Goncalves,M.F., Jallow,S., Xu,L., Camacho,R.J., Soriano,V.,
	    Goubau,P., de Sousa,J.D., Vandamme,A.-M., Suchard,M.A. and Lemey,P.
  TITLE     Phylogeographical footprint of colonial history in the global
	    dispersal of human immunodeficiency virus type 2 group A.
  JOURNAL   J Gen Virol. 2012 Apr;93(Pt 4):889-99. Epub 2011 Dec 21.
  PUBMED    22190015
REFERENCE   2 (bases 1 to 1123)
            Show all sequences for reference 2
  AUTHORS   Silva,J.C., Goncalves,M.F. and Camacho,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-DEC-2011) Centro Hospitalar de Lisboa Ocidental,
	    Laboratorio de Biologia Molecular, Rua da Junqueira, 126, Lisboa
	    1349-019, Portugal
COMMENT     ##Assembly-Data-START## Assembly Method SeqScape v. 2.5 Sequencing
	    Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..1123
		     /organism="Human immunodeficiency virus 2"
		     /proviral="Human immunodeficiency virus 2"
		     /mol_type="genomic DNA"
		     /isolate="34306"
		     /host="Homo sapiens"
		     /db_xref="taxon:11709"
		     /country="Portugal"
		     /collection_date="21-Jun-1999"
		     /note="group: A"
     gene	     <1..>1123
		     /gene="pol"
     CDS	     <1..>1123
		     /gene="pol"
		     /codon_start="3"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEX87835.1"
		     /db_xref="GI:372124851"
		     /translation="GLAAPQFSLWKRPVVTAHIEGQPVEVLLDTGADDSLVAGIELGS
		     NYSPKIVGGIGGFINTKEYKNVEIEVLGKRVRATIMTGDTPINIFGRNVLTALGMSLN
		     LPVAKIEPVKIMLKPGKDGPKLRQWPLTKEKIEALKEICERWKKEGQLEEAPPTNPYN
		     TPTFAIQKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKRRITVLDVGDAY
		     FSIPLDKDFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRQILEPFRR
		     ANPDVIIIQYMDDILIASDRTDLEHDRVVLQLKELLNGLGFSTPDDKFQKDPPYYWMG
		     YELWPTKWKLQKIQLPQKGVWTVNDIQKLVGVLNWVAQL"
BASE COUNT	426 a	 217 c	  240 g    240 t
ORIGIN
       1 gaggacttgc tgcacctcaa ttctctcttt ggaaacgacc agtagtcaca gcacacattg 
      61 agggtcagcc agtagaagtt ctgttagaca cgggggctga cgactcatta gtagcaggaa 
     121 tagagttagg gagcaattat agtccaaaaa tagtaggggg aataggggga ttcataaata 
     181 ccaaggaata taaaaatgta gaaatagaag ttctaggtaa aagagtaaga gccaccataa 
     241 tgacaggtga taccccgatc aacatttttg gcagaaacgt tctgacagcc ttaggcatgt 
     301 cattaaatct accagttgcc aaaatagagc cagtgaaaat aatgctaaag ccaggaaaag 
     361 atggaccaaa actgagacaa tggccattaa caaaagaaaa aatagaagca ctaaaagaga 
     421 tctgtgaaag atggaaaaaa gaaggccagc tagaggaagc acctccaact aatccttata 
     481 atacccccac atttgcaatc cagaaaaagg acaaaaacaa atggagaatg ctaatagatt 
     541 ttagagaact aaacaaggta actcaagact tcacagaaat tcagttagga atcccacacc 
     601 cagcaggatt ggccaaaaag agaagaatta ctgtactaga tgtaggggat gcttactttt 
     661 ctataccact agataaggac tttagacaat ataccgcatt tactctacca tcagtgaaca 
     721 atgcagaacc aggaaaaaga tacatatata aggtcctgcc acagggatgg aaggggtcac 
     781 cagcaatttt tcaatacaca atgaggcaga tcttagaacc attcagaaga gcaaacccgg 
     841 atgtcattat cattcagtac atggatgata tcttgatagc tagcgacagg acagatttag 
     901 aacatgacag agtggtcctg cagctaaaag aacttctgaa tggcctagga ttttccaccc 
     961 cagatgacaa attccaaaag gaccctccat actactggat gggctatgag ctatggccaa 
    1021 ctaaatggaa gttgcagaaa atacaattac cccaaaaagg agtatggaca gtcaatgaca 
    1081 tccaaaaact agtgggtgtc ctaaattggg tagcacaact cta
//
last modified: Tue May 31 10:56 2022


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