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LOCUS JQ282089 1123 bp DNA linear VRL 18-JAN-2012
DEFINITION HIV-2 isolate 34306 from Portugal pol protein (pol) gene, partial
cds
ACCESSION JQ282089
VERSION JQ282089.1 GI:372124850
KEYWORDS .
SOURCE Human immunodeficiency virus 2 (HIV-2)
ORGANISM Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1123)
Show all sequences for reference 1
AUTHORS Faria,N.R., Hodges-Mameletzis,I., Silva,J.C., Rodes,B., Erasmus,S.,
Paolucci,S., Ruelle,J., Pieniazek,D., Taveira,N., Trevino,A.,
Goncalves,M.F., Jallow,S., Xu,L., Camacho,R.J., Soriano,V.,
Goubau,P., de Sousa,J.D., Vandamme,A.-M., Suchard,M.A. and Lemey,P.
TITLE Phylogeographical footprint of colonial history in the global
dispersal of human immunodeficiency virus type 2 group A.
JOURNAL J Gen Virol. 2012 Apr;93(Pt 4):889-99. Epub 2011 Dec 21.
PUBMED 22190015
REFERENCE 2 (bases 1 to 1123)
Show all sequences for reference 2
AUTHORS Silva,J.C., Goncalves,M.F. and Camacho,R.J.
TITLE Direct Submission
JOURNAL Submitted (12-DEC-2011) Centro Hospitalar de Lisboa Ocidental,
Laboratorio de Biologia Molecular, Rua da Junqueira, 126, Lisboa
1349-019, Portugal
COMMENT ##Assembly-Data-START## Assembly Method SeqScape v. 2.5 Sequencing
Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1123
/organism="Human immunodeficiency virus 2"
/proviral="Human immunodeficiency virus 2"
/mol_type="genomic DNA"
/isolate="34306"
/host="Homo sapiens"
/db_xref="taxon:11709"
/country="Portugal"
/collection_date="21-Jun-1999"
/note="group: A"
gene <1..>1123
/gene="pol"
CDS <1..>1123
/gene="pol"
/codon_start="3"
/transl_table="1"
/product="pol protein"
/protein_id="AEX87835.1"
/db_xref="GI:372124851"
/translation="GLAAPQFSLWKRPVVTAHIEGQPVEVLLDTGADDSLVAGIELGS
NYSPKIVGGIGGFINTKEYKNVEIEVLGKRVRATIMTGDTPINIFGRNVLTALGMSLN
LPVAKIEPVKIMLKPGKDGPKLRQWPLTKEKIEALKEICERWKKEGQLEEAPPTNPYN
TPTFAIQKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKRRITVLDVGDAY
FSIPLDKDFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRQILEPFRR
ANPDVIIIQYMDDILIASDRTDLEHDRVVLQLKELLNGLGFSTPDDKFQKDPPYYWMG
YELWPTKWKLQKIQLPQKGVWTVNDIQKLVGVLNWVAQL"
BASE COUNT 426 a 217 c 240 g 240 t
ORIGIN
1 gaggacttgc tgcacctcaa ttctctcttt ggaaacgacc agtagtcaca gcacacattg
61 agggtcagcc agtagaagtt ctgttagaca cgggggctga cgactcatta gtagcaggaa
121 tagagttagg gagcaattat agtccaaaaa tagtaggggg aataggggga ttcataaata
181 ccaaggaata taaaaatgta gaaatagaag ttctaggtaa aagagtaaga gccaccataa
241 tgacaggtga taccccgatc aacatttttg gcagaaacgt tctgacagcc ttaggcatgt
301 cattaaatct accagttgcc aaaatagagc cagtgaaaat aatgctaaag ccaggaaaag
361 atggaccaaa actgagacaa tggccattaa caaaagaaaa aatagaagca ctaaaagaga
421 tctgtgaaag atggaaaaaa gaaggccagc tagaggaagc acctccaact aatccttata
481 atacccccac atttgcaatc cagaaaaagg acaaaaacaa atggagaatg ctaatagatt
541 ttagagaact aaacaaggta actcaagact tcacagaaat tcagttagga atcccacacc
601 cagcaggatt ggccaaaaag agaagaatta ctgtactaga tgtaggggat gcttactttt
661 ctataccact agataaggac tttagacaat ataccgcatt tactctacca tcagtgaaca
721 atgcagaacc aggaaaaaga tacatatata aggtcctgcc acagggatgg aaggggtcac
781 cagcaatttt tcaatacaca atgaggcaga tcttagaacc attcagaaga gcaaacccgg
841 atgtcattat cattcagtac atggatgata tcttgatagc tagcgacagg acagatttag
901 aacatgacag agtggtcctg cagctaaaag aacttctgaa tggcctagga ttttccaccc
961 cagatgacaa attccaaaag gaccctccat actactggat gggctatgag ctatggccaa
1021 ctaaatggaa gttgcagaaa atacaattac cccaaaaagg agtatggaca gtcaatgaca
1081 tccaaaaact agtgggtgtc ctaaattggg tagcacaact cta
//
last modified: Tue May 31 10:56 2022