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LOCUS	    JQ070696		     732 bp    RNA     linear	VRL 26-MAR-2012
DEFINITION  HIV-1 isolate 2004_1068 from South Africa pol protein (pol) gene,
	    partial cds
ACCESSION   JQ070696
VERSION     JQ070696.1 GI:380750439
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 732)
            Show all sequences for reference 1
  AUTHORS   Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
	    Bennett,D.E., Puren,A. and Morris,L.
  TITLE     Antiretroviral drug resistance surveillance among drug-naive
	    HIV-1-infected individuals in Gauteng Province, South Africa in
	    2002 and 2004
  JOURNAL   Antivir. Ther. (Lond.) 13 SUPPL 2, 101-107 (2008)
  PUBMED    18575198
REFERENCE   2 (bases 1 to 732)
            Show all sequences for reference 2
  AUTHORS   Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
	    Bennette,D., Puren,A. and Morris,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-NOV-2011) Aids Virus Research Unit, NICD, 1
	    Modderfontein Road, Sandringham, Gauteng 2131, South Africa
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Ledwaba,J., Sayed,Y., Pillay,V., Morris,L. and Hunt,G.
  TITLE     Low Frequency of Protease Inhibitor Resistance Mutations and
	    Insertions in HIV-1 Subtype C Protease Inhibitor-Naive Sequences.
  JOURNAL   AIDS Res. Hum. Retroviruses. 35(7); 673-678 (2019)
  PUBMED    30793914
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
	    Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
	    Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
	    Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
	    Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
	    Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
	    Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
  TITLE     Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
	    Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
	    Analysis.
  JOURNAL   EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
	    10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
  PUBMED    31143879
FEATURES             Location/Qualifiers
     source	     1..732
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="2004_1068"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="2004"
     gene	     <1..>732
		     /gene="pol"
     CDS	     <1..>732
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AFE55656.1"
		     /db_xref="GI:380750440"
		     /translation="PISPIKTVPVKLKPGMDGPKVKQWPLTEEKIKALTEICEEMEKE
		     GKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
		     KKSVTVLDVGDAYFSVPLDEGFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
		     QSSMTKILEPFRAKNPEIVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPD
		     KKHQKEPPFLWMGYELHPDKWTVQPI"
BASE COUNT	295 a	 120 c	  150 g    166 t      1 other
ORIGIN
       1 ccaattagtc ctattaaaac tgtaccagta aaactaaagc caggaatgga tggcccaaag 
      61 gttaaacaat ggccattgac agaagagaaa ataaaagcat taacagaaat ttgtgaagag 
     121 atggaaaagg aaggaaaaat tacaaaaatt gggcctgaaa atccatataa tactccagta 
     181 tttgccataa aaaagaagga cagtactaag tggagaaaat tagtagattt cagggaactt 
     241 aataaaagaa ctcaagactt ttgggaagtt caattaggaa taccacaccc agcagggtta 
     301 aaaaagaaaa aatcagtgac agtactrgat gtgggggatg catatttttc ggttccttta 
     361 gatgaaggct tcaggaaata tactgcattc accataccta gtataaacaa tgaaacacca 
     421 gggattagat atcaatacaa tgtgcttcca cagggatgga aaggatcacc agcaatattc 
     481 caaagtagca tgacaaaaat cttagagccc tttagagcaa aaaatccaga aatagtcatc 
     541 tatcaatata tggatgactt gtatgtagga tctgacttag agatagggca acatagagca 
     601 aaaatagagg agttaagaga acatctatta aggtggggat ttaccacacc agacaagaaa 
     661 catcagaaag aacccccatt tctttggatg gggtatgaac tccatcctga caaatggaca 
     721 gtacagccta ta
//
last modified: Tue May 31 10:56 2022


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