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LOCUS JQ070696 732 bp RNA linear VRL 26-MAR-2012
DEFINITION HIV-1 isolate 2004_1068 from South Africa pol protein (pol) gene,
partial cds
ACCESSION JQ070696
VERSION JQ070696.1 GI:380750439
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 732)
Show all sequences for reference 1
AUTHORS Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
Bennett,D.E., Puren,A. and Morris,L.
TITLE Antiretroviral drug resistance surveillance among drug-naive
HIV-1-infected individuals in Gauteng Province, South Africa in
2002 and 2004
JOURNAL Antivir. Ther. (Lond.) 13 SUPPL 2, 101-107 (2008)
PUBMED 18575198
REFERENCE 2 (bases 1 to 732)
Show all sequences for reference 2
AUTHORS Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
Bennette,D., Puren,A. and Morris,L.
TITLE Direct Submission
JOURNAL Submitted (24-NOV-2011) Aids Virus Research Unit, NICD, 1
Modderfontein Road, Sandringham, Gauteng 2131, South Africa
REFERENCE 3
Show all sequences for reference 3
AUTHORS Ledwaba,J., Sayed,Y., Pillay,V., Morris,L. and Hunt,G.
TITLE Low Frequency of Protease Inhibitor Resistance Mutations and
Insertions in HIV-1 Subtype C Protease Inhibitor-Naive Sequences.
JOURNAL AIDS Res. Hum. Retroviruses. 35(7); 673-678 (2019)
PUBMED 30793914
REFERENCE 4
Show all sequences for reference 4
AUTHORS Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
TITLE Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
Analysis.
JOURNAL EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
PUBMED 31143879
FEATURES Location/Qualifiers
source 1..732
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="2004_1068"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="2004"
gene <1..>732
/gene="pol"
CDS <1..>732
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AFE55656.1"
/db_xref="GI:380750440"
/translation="PISPIKTVPVKLKPGMDGPKVKQWPLTEEKIKALTEICEEMEKE
GKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
KKSVTVLDVGDAYFSVPLDEGFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
QSSMTKILEPFRAKNPEIVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPD
KKHQKEPPFLWMGYELHPDKWTVQPI"
BASE COUNT 295 a 120 c 150 g 166 t 1 other
ORIGIN
1 ccaattagtc ctattaaaac tgtaccagta aaactaaagc caggaatgga tggcccaaag
61 gttaaacaat ggccattgac agaagagaaa ataaaagcat taacagaaat ttgtgaagag
121 atggaaaagg aaggaaaaat tacaaaaatt gggcctgaaa atccatataa tactccagta
181 tttgccataa aaaagaagga cagtactaag tggagaaaat tagtagattt cagggaactt
241 aataaaagaa ctcaagactt ttgggaagtt caattaggaa taccacaccc agcagggtta
301 aaaaagaaaa aatcagtgac agtactrgat gtgggggatg catatttttc ggttccttta
361 gatgaaggct tcaggaaata tactgcattc accataccta gtataaacaa tgaaacacca
421 gggattagat atcaatacaa tgtgcttcca cagggatgga aaggatcacc agcaatattc
481 caaagtagca tgacaaaaat cttagagccc tttagagcaa aaaatccaga aatagtcatc
541 tatcaatata tggatgactt gtatgtagga tctgacttag agatagggca acatagagca
601 aaaatagagg agttaagaga acatctatta aggtggggat ttaccacacc agacaagaaa
661 catcagaaag aacccccatt tctttggatg gggtatgaac tccatcctga caaatggaca
721 gtacagccta ta
//
last modified: Tue May 31 10:56 2022