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LOCUS JQ070685 732 bp RNA linear VRL 26-MAR-2012
DEFINITION HIV-1 isolate 2004_0681 from South Africa pol protein (pol) gene,
partial cds
ACCESSION JQ070685
VERSION JQ070685.1 GI:380750417
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 732)
Show all sequences for reference 1
AUTHORS Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
Bennett,D.E., Puren,A. and Morris,L.
TITLE Antiretroviral drug resistance surveillance among drug-naive
HIV-1-infected individuals in Gauteng Province, South Africa in
2002 and 2004
JOURNAL Antivir. Ther. (Lond.) 13 SUPPL 2, 101-107 (2008)
PUBMED 18575198
REFERENCE 2 (bases 1 to 732)
Show all sequences for reference 2
AUTHORS Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
Bennette,D., Puren,A. and Morris,L.
TITLE Direct Submission
JOURNAL Submitted (24-NOV-2011) Aids Virus Research Unit, NICD, 1
Modderfontein Road, Sandringham, Gauteng 2131, South Africa
REFERENCE 3
Show all sequences for reference 3
AUTHORS Ledwaba,J., Sayed,Y., Pillay,V., Morris,L. and Hunt,G.
TITLE Low Frequency of Protease Inhibitor Resistance Mutations and
Insertions in HIV-1 Subtype C Protease Inhibitor-Naive Sequences.
JOURNAL AIDS Res. Hum. Retroviruses. 35(7); 673-678 (2019)
PUBMED 30793914
REFERENCE 4
Show all sequences for reference 4
AUTHORS Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
TITLE Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
Analysis.
JOURNAL EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
PUBMED 31143879
FEATURES Location/Qualifiers
source 1..732
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="2004_0681"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="2004"
gene <1..>732
/gene="pol"
CDS <1..>732
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AFE55645.1"
/db_xref="GI:380750418"
/translation="PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKE
GKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
KKSVTVLDVGDAYFSVPLDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
QSSMTKILEPFRAQNPEMVIYQYMDDLYVGSDLEIGKHRAKIEELRNHLLKWGFTTPD
KKHQKEPPFLWMGYELHPDKWTVQPI"
BASE COUNT 300 a 121 c 147 g 164 t
ORIGIN
1 ccaattagtc ccattgaaac tgtaccagta aaattaaagc caggaatgga tggcccaaaa
61 gttaagcaat ggccattgac agaagaaaaa ataaaagcat taacagcaat ttgtgaagaa
121 atggagaagg aaggaaaaat tacaaaaatt gggcctgaaa atccatataa cactccagta
181 tttgccataa aaaagaagga cagtactaaa tggagaaaat tagtagattt cagagaactc
241 aataaaagaa ctcaagactt ttgggaagtt caattaggaa taccacaccc agcaggatta
301 aaaaagaaaa aatcagtgac agtactagat gtgggagatg catatttttc agtgccttta
361 gatgaaagct tcaggaagta tactgcattc accataccta gtataaacaa tgaaacacca
421 gggattagat atcaatataa tgtacttcca cagggatgga aaggatcacc agcaatattc
481 cagagtagca tgacaaaaat attagagccc tttagggcac aaaatccaga aatggttatc
541 tatcaataca tggatgactt gtatgtagga tcagatttag aaatagggaa acatagagca
601 aaaatagagg agttgagaaa tcacctattg aaatggggat ttaccacacc agacaagaag
661 catcagaaag aacccccatt tctttggatg gggtatgaac tccatcctga caaatggaca
721 gtacagccta ta
//
last modified: Tue May 31 10:56 2022