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LOCUS	    JQ070685		     732 bp    RNA     linear	VRL 26-MAR-2012
DEFINITION  HIV-1 isolate 2004_0681 from South Africa pol protein (pol) gene,
	    partial cds
ACCESSION   JQ070685
VERSION     JQ070685.1 GI:380750417
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 732)
            Show all sequences for reference 1
  AUTHORS   Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
	    Bennett,D.E., Puren,A. and Morris,L.
  TITLE     Antiretroviral drug resistance surveillance among drug-naive
	    HIV-1-infected individuals in Gauteng Province, South Africa in
	    2002 and 2004
  JOURNAL   Antivir. Ther. (Lond.) 13 SUPPL 2, 101-107 (2008)
  PUBMED    18575198
REFERENCE   2 (bases 1 to 732)
            Show all sequences for reference 2
  AUTHORS   Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
	    Bennette,D., Puren,A. and Morris,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-NOV-2011) Aids Virus Research Unit, NICD, 1
	    Modderfontein Road, Sandringham, Gauteng 2131, South Africa
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Ledwaba,J., Sayed,Y., Pillay,V., Morris,L. and Hunt,G.
  TITLE     Low Frequency of Protease Inhibitor Resistance Mutations and
	    Insertions in HIV-1 Subtype C Protease Inhibitor-Naive Sequences.
  JOURNAL   AIDS Res. Hum. Retroviruses. 35(7); 673-678 (2019)
  PUBMED    30793914
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
	    Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
	    Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
	    Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
	    Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
	    Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
	    Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
  TITLE     Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
	    Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
	    Analysis.
  JOURNAL   EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
	    10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
  PUBMED    31143879
FEATURES             Location/Qualifiers
     source	     1..732
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="2004_0681"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="2004"
     gene	     <1..>732
		     /gene="pol"
     CDS	     <1..>732
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AFE55645.1"
		     /db_xref="GI:380750418"
		     /translation="PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKE
		     GKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
		     KKSVTVLDVGDAYFSVPLDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
		     QSSMTKILEPFRAQNPEMVIYQYMDDLYVGSDLEIGKHRAKIEELRNHLLKWGFTTPD
		     KKHQKEPPFLWMGYELHPDKWTVQPI"
BASE COUNT	300 a	 121 c	  147 g    164 t
ORIGIN
       1 ccaattagtc ccattgaaac tgtaccagta aaattaaagc caggaatgga tggcccaaaa 
      61 gttaagcaat ggccattgac agaagaaaaa ataaaagcat taacagcaat ttgtgaagaa 
     121 atggagaagg aaggaaaaat tacaaaaatt gggcctgaaa atccatataa cactccagta 
     181 tttgccataa aaaagaagga cagtactaaa tggagaaaat tagtagattt cagagaactc 
     241 aataaaagaa ctcaagactt ttgggaagtt caattaggaa taccacaccc agcaggatta 
     301 aaaaagaaaa aatcagtgac agtactagat gtgggagatg catatttttc agtgccttta 
     361 gatgaaagct tcaggaagta tactgcattc accataccta gtataaacaa tgaaacacca 
     421 gggattagat atcaatataa tgtacttcca cagggatgga aaggatcacc agcaatattc 
     481 cagagtagca tgacaaaaat attagagccc tttagggcac aaaatccaga aatggttatc 
     541 tatcaataca tggatgactt gtatgtagga tcagatttag aaatagggaa acatagagca 
     601 aaaatagagg agttgagaaa tcacctattg aaatggggat ttaccacacc agacaagaag 
     661 catcagaaag aacccccatt tctttggatg gggtatgaac tccatcctga caaatggaca 
     721 gtacagccta ta
//
last modified: Tue May 31 10:56 2022


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