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LOCUS	    JQ070679		    1170 bp    RNA     linear	VRL 01-NOV-2016
DEFINITION  HIV-1 isolate 2004_0180 from South Africa pol protein (pol) gene,
	    partial cds
ACCESSION   JQ070679
VERSION     JQ070679.2 GI:1095577991
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 732)
            Show all sequences for reference 1
  AUTHORS   Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
	    Bennett,D.E., Puren,A. and Morris,L.
  TITLE     Antiretroviral drug resistance surveillance among drug-naive
	    HIV-1-infected individuals in Gauteng Province, South Africa in
	    2002 and 2004
  JOURNAL   Antivir. Ther. (Lond.) 13 SUPPL 2, 101-107 (2008)
  PUBMED    18575198
REFERENCE   2 (bases 1 to 732)
            Show all sequences for reference 2
  AUTHORS   Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
	    Bennette,D., Puren,A. and Morris,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-NOV-2011) Aids Virus Research Unit, NICD, 1
	    Modderfontein Road, Sandringham, Gauteng 2131, South Africa
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Ledwaba,J., Sayed,Y., Pillay,V., Morris,L. and Hunt,G.
  TITLE     Low Frequency of Protease Inhibitor Resistance Mutations and
	    Insertions in HIV-1 Subtype C Protease Inhibitor-Naive Sequences.
  JOURNAL   AIDS Res. Hum. Retroviruses. 35(7); 673-678 (2019)
  PUBMED    30793914
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
	    Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
	    Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
	    Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
	    Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
	    Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
	    Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
  TITLE     Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
	    Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
	    Analysis.
  JOURNAL   EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
	    10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
  PUBMED    31143879
FEATURES             Location/Qualifiers
     source	     1..1170
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="2004_0180"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="2004"
     gene	     <1..>1170
		     /gene="pol"
     CDS	     <1..>1170
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AFE55639.2"
		     /translation="PQITLWQRPLVTIKVEGQIKEALLDTGADDTVLEELSLPGKWKP
		     KMIGGIGGFIKVRQYEQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTMICEEMEKEGKITKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDESFRKYTAFTIPSTNNATPGIRYQYNVLPQGWKGSPAIFQSSMTKILXPFRNRNPB
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELRXHLLKWGLTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTD"
BASE COUNT	456 a	 194 c	  245 g    263 t     12 other
ORIGIN
       1 cctcaaatca ctctttggca gcgacccctg gtcacaataa aagtagaggg ccagataaag 
      61 gaagctctcc tagatacrgg agcagatgat acagtattag aagaattaag tttaccagga 
     121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgaa 
     181 caaatactta tagaaatttg tgggaaaaag gctataggta cagttttagt aggacctaca 
     241 cctgtcaaca taattggaag aaatatgttg acacagcttg gatgcacact aaattttcca 
     301 attagtccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agagaaaata aaagcattaa caatgatttg tgaagaaatg 
     421 gaaaaggaag gaaaaattac aaaaattggg cctgaaaatc catataayac tccagtattt 
     481 gccataaaaa agaaggacag tacyaagtgg agaaaattag tagatttcag ggaactcaat 
     541 aaaagaactc aagacttttg ggargttcaa ttaggaatac cacacccagc agggttaaaa 
     601 aagaaraaat cagtgacagt gctagatgtg ggggatgcat atttttcagt tcctttagat 
     661 gaaagcttta gaaaatatac tgcattcacc atacctagta caaacaatgc aacaccagga 
     721 attagatatc aatayaatgt gcttccacag ggatggaaag gatcaccagc aatattccag 
     781 agtagcatga caaaaatctt agmgcccttt aggaatcgta acccaracat agttatctat 
     841 caatatatgg atgacctgta tgtaggatct gacttagaaa tagggcaaca tagagcaaaa 
     901 atagaggagy taaggrraca tttattaaaa tggggactta cyacaccaga caagaaacat 
     961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta 
    1021 cagcctatac agctgccaga aaaagacagc tggactgtca atgatataca gaaattagtg 
    1081 ggaaaattaa actgggcaag tcagatttac ccagggatca aagtaaggca gctgtgtaag 
    1141 ctccttaggg gagccaaagc actaacagat 
//
last modified: Tue May 31 10:56 2022


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