View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS JQ070679 1170 bp RNA linear VRL 01-NOV-2016
DEFINITION HIV-1 isolate 2004_0180 from South Africa pol protein (pol) gene,
partial cds
ACCESSION JQ070679
VERSION JQ070679.2 GI:1095577991
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 732)
Show all sequences for reference 1
AUTHORS Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
Bennett,D.E., Puren,A. and Morris,L.
TITLE Antiretroviral drug resistance surveillance among drug-naive
HIV-1-infected individuals in Gauteng Province, South Africa in
2002 and 2004
JOURNAL Antivir. Ther. (Lond.) 13 SUPPL 2, 101-107 (2008)
PUBMED 18575198
REFERENCE 2 (bases 1 to 732)
Show all sequences for reference 2
AUTHORS Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
Bennette,D., Puren,A. and Morris,L.
TITLE Direct Submission
JOURNAL Submitted (24-NOV-2011) Aids Virus Research Unit, NICD, 1
Modderfontein Road, Sandringham, Gauteng 2131, South Africa
REFERENCE 3
Show all sequences for reference 3
AUTHORS Ledwaba,J., Sayed,Y., Pillay,V., Morris,L. and Hunt,G.
TITLE Low Frequency of Protease Inhibitor Resistance Mutations and
Insertions in HIV-1 Subtype C Protease Inhibitor-Naive Sequences.
JOURNAL AIDS Res. Hum. Retroviruses. 35(7); 673-678 (2019)
PUBMED 30793914
REFERENCE 4
Show all sequences for reference 4
AUTHORS Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
TITLE Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
Analysis.
JOURNAL EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
PUBMED 31143879
FEATURES Location/Qualifiers
source 1..1170
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="2004_0180"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="2004"
gene <1..>1170
/gene="pol"
CDS <1..>1170
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AFE55639.2"
/translation="PQITLWQRPLVTIKVEGQIKEALLDTGADDTVLEELSLPGKWKP
KMIGGIGGFIKVRQYEQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTMICEEMEKEGKITKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDESFRKYTAFTIPSTNNATPGIRYQYNVLPQGWKGSPAIFQSSMTKILXPFRNRNPB
IVIYQYMDDLYVGSDLEIGQHRAKIEELRXHLLKWGLTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTD"
BASE COUNT 456 a 194 c 245 g 263 t 12 other
ORIGIN
1 cctcaaatca ctctttggca gcgacccctg gtcacaataa aagtagaggg ccagataaag
61 gaagctctcc tagatacrgg agcagatgat acagtattag aagaattaag tttaccagga
121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgaa
181 caaatactta tagaaatttg tgggaaaaag gctataggta cagttttagt aggacctaca
241 cctgtcaaca taattggaag aaatatgttg acacagcttg gatgcacact aaattttcca
301 attagtccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agagaaaata aaagcattaa caatgatttg tgaagaaatg
421 gaaaaggaag gaaaaattac aaaaattggg cctgaaaatc catataayac tccagtattt
481 gccataaaaa agaaggacag tacyaagtgg agaaaattag tagatttcag ggaactcaat
541 aaaagaactc aagacttttg ggargttcaa ttaggaatac cacacccagc agggttaaaa
601 aagaaraaat cagtgacagt gctagatgtg ggggatgcat atttttcagt tcctttagat
661 gaaagcttta gaaaatatac tgcattcacc atacctagta caaacaatgc aacaccagga
721 attagatatc aatayaatgt gcttccacag ggatggaaag gatcaccagc aatattccag
781 agtagcatga caaaaatctt agmgcccttt aggaatcgta acccaracat agttatctat
841 caatatatgg atgacctgta tgtaggatct gacttagaaa tagggcaaca tagagcaaaa
901 atagaggagy taaggrraca tttattaaaa tggggactta cyacaccaga caagaaacat
961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta
1021 cagcctatac agctgccaga aaaagacagc tggactgtca atgatataca gaaattagtg
1081 ggaaaattaa actgggcaag tcagatttac ccagggatca aagtaaggca gctgtgtaag
1141 ctccttaggg gagccaaagc actaacagat
//
last modified: Tue May 31 10:56 2022