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LOCUS JQ070650 1194 bp RNA linear VRL 01-NOV-2016
DEFINITION HIV-1 isolate 2002_8308 from South Africa pol protein (pol) gene,
partial cds
ACCESSION JQ070650
VERSION JQ070650.2 GI:1095577911
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 732)
Show all sequences for reference 1
AUTHORS Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
Bennett,D.E., Puren,A. and Morris,L.
TITLE Antiretroviral drug resistance surveillance among drug-naive
HIV-1-infected individuals in Gauteng Province, South Africa in
2002 and 2004
JOURNAL Antivir. Ther. (Lond.) 13 SUPPL 2, 101-107 (2008)
PUBMED 18575198
REFERENCE 2 (bases 1 to 732)
Show all sequences for reference 2
AUTHORS Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
Bennette,D., Puren,A. and Morris,L.
TITLE Direct Submission
JOURNAL Submitted (24-NOV-2011) Aids Virus Research Unit, NICD, 1
Modderfontein Road, Sandringham, Gauteng 2131, South Africa
REFERENCE 3
Show all sequences for reference 3
AUTHORS Ledwaba,J., Sayed,Y., Pillay,V., Morris,L. and Hunt,G.
TITLE Low Frequency of Protease Inhibitor Resistance Mutations and
Insertions in HIV-1 Subtype C Protease Inhibitor-Naive Sequences.
JOURNAL AIDS Res. Hum. Retroviruses. 35(7); 673-678 (2019)
PUBMED 30793914
REFERENCE 4
Show all sequences for reference 4
AUTHORS Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
TITLE Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
Analysis.
JOURNAL EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
PUBMED 31143879
FEATURES Location/Qualifiers
source 1..1194
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="2002_8308"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="2002"
gene <1..>1194
/gene="pol"
CDS <1..>1194
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AFE55610.2"
/translation="PQITPWQRPLVTIKVGGQIKEALLDTGADDTVLEDINLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDESFRKYTAFTIPSINNATPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPYRSKNPG
IIIYQYMDDLYVGSDLEIGQHRAKIEELRKHLLEWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCRLLRGAKALTDIV
PLTEEA"
BASE COUNT 463 a 204 c 259 g 266 t 2 other
ORIGIN
1 cctcaaatca ctccytggca gcgacccctt gtcacaataa aagtaggggg ccaaataaag
61 gaggctctct tagacacagg agcagatgat acagtattag aagacataaa tttgccagga
121 aaatggaaac caaagatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat
181 caaatactta tagaratttg tgggaaaaaa gctataggta cagtattagt agggcctaca
241 cctgtcaaca taattggaag aaacatgttg actcagcttg gatgcactct aaattttcca
301 attagtccca ttgaaactgt accagtaaaa ctgaagccag gaatggatgg gccaaaggtt
361 aaacaatggc cattaacaga agaaaaaata aaagcattaa cagcaatctg tgaggaaatg
421 gagaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccagtattt
481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaactcaat
541 aaaagaactc aagatttctg ggaggttcaa ttaggaatac cgcacccagc agggttaaag
601 aagaaaaaat cagtgacagt actggatgtg ggggatgcat atttttcagt tcctttagat
661 gaaagcttca ggaaatatac tgcattcacc atacctagta taaacaatgc aacaccaggg
721 attagatatc aatataatgt gcttccacag ggatggaaag gatcaccagc aatattccag
781 tgtagcatga caaaaatctt agagccctat agatcaaaaa atccaggaat aatcatctat
841 caatatatgg atgacttgta tgtaggatct gacttagaaa tagggcaaca tagagcaaag
901 atagaggagt taagaaaaca tctattagag tggggattca ccacaccaga caagaaacat
961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta
1021 cagcctatac agctgccaga aaaggaaagc tggactgtca atgatataca gaagttagtg
1081 ggaaaattaa actgggcaag tcagatttac ccaggaatta aagtaaagca actttgtaga
1141 ctccttaggg gggccaaagc actaacagac atagtaccac taactgagga agca
//
last modified: Tue May 31 10:56 2022