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LOCUS	    JQ070638		    1194 bp    RNA     linear	VRL 01-NOV-2016
DEFINITION  HIV-1 isolate 2002_7794 from South Africa pol protein (pol) gene,
	    partial cds
ACCESSION   JQ070638
VERSION     JQ070638.2 GI:1095577866
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 732)
            Show all sequences for reference 1
  AUTHORS   Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
	    Bennett,D.E., Puren,A. and Morris,L.
  TITLE     Antiretroviral drug resistance surveillance among drug-naive
	    HIV-1-infected individuals in Gauteng Province, South Africa in
	    2002 and 2004
  JOURNAL   Antivir. Ther. (Lond.) 13 SUPPL 2, 101-107 (2008)
  PUBMED    18575198
REFERENCE   2 (bases 1 to 732)
            Show all sequences for reference 2
  AUTHORS   Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
	    Bennette,D., Puren,A. and Morris,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-NOV-2011) Aids Virus Research Unit, NICD, 1
	    Modderfontein Road, Sandringham, Gauteng 2131, South Africa
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Ledwaba,J., Sayed,Y., Pillay,V., Morris,L. and Hunt,G.
  TITLE     Low Frequency of Protease Inhibitor Resistance Mutations and
	    Insertions in HIV-1 Subtype C Protease Inhibitor-Naive Sequences.
  JOURNAL   AIDS Res. Hum. Retroviruses. 35(7); 673-678 (2019)
  PUBMED    30793914
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
	    Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
	    Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
	    Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
	    Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
	    Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
	    Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
  TITLE     Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
	    Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
	    Analysis.
  JOURNAL   EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
	    10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
  PUBMED    31143879
FEATURES             Location/Qualifiers
     source	     1..1194
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="2002_7794"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="2002"
     gene	     <1..>1194
		     /gene="pol"
     CDS	     <1..>1194
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AFE55598.2"
		     /translation="PQITLWQRPLVSIKVGGQIKEALLDTGADDTVLEDINLPGRWKP
		     KMXGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNRRTQDFWEVQLGIPHPSGLKKKKSVTVLDVGDAYFSVP
		     LDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAKNPE
		     IIIYQYMDDLYVGSDLEIGPHRAKIEELREHLLKWGLTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYSGIKVKQLCKCJRGAKALTEIV
		     PLTEEA"
BASE COUNT	461 a	 202 c	  261 g    266 t      4 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctt gtctcaataa aggtaggggg ccagataaag 
      61 gaagccctct tagacacagg agcagatgat acagtattag aagacataaa tttgccagga 
     121 agatggaagc caaaaatgay aggaggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caaatactta tagaaatttg tggaaaaaag gctataggca cagtattagt agggcctaca 
     241 cctgtcaaca taattggaag gaatatgttg actcagcttg gatgcacact aaattttcca 
     301 attagcccca ttgagactgt accagtaaaa ttgaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagcaatttg tgaagaaatg 
     421 gagaaggagg gaaaaattac aaaaattggg cctgagaatc catacaacac wccagtattt 
     481 gctataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaactcaat 
     541 agaagaactc aagacttttg ggaggttcag ttaggaatac cacacccatc agggttaaaa 
     601 aagaaaaaat cagtgacagt gttagatgtg ggggatgcat atttttcagt tcctttagat 
     661 gaagacttca ggaaatatac tgcattcacc atacctagta caaacaatga aacaccaggg 
     721 attagatatc aatataatgt gctaccacag ggatggaaag gatcaccagc matattccag 
     781 agtagcatga caaaaatctt agagcccttt agagcaaaaa atccagaaat aatcatctac 
     841 caatatatgg atgacttgta tgtaggatct gacttagaaa tagggccaca tagagcaaaa 
     901 atagaggagt taagagaaca tctattaaag tggggactta ccacaccaga caagaaacat 
     961 cagaaagaac ccccgtttct ttggatggga tatgaactcc atcctgacaa atggacagta 
    1021 cagcccatcc agctgccaga aaaggatagc tggactgtca atgatataca gaagttagta 
    1081 gggaaattaa actgggcaag tcagatttac tcagggatta aagtaaagca actttgtaaa 
    1141 tgcmttaggg gggccaaagc attaacagaa atagtaccac taactgaaga agca
//
last modified: Tue May 31 10:56 2022


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