View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS JQ070638 1194 bp RNA linear VRL 01-NOV-2016
DEFINITION HIV-1 isolate 2002_7794 from South Africa pol protein (pol) gene,
partial cds
ACCESSION JQ070638
VERSION JQ070638.2 GI:1095577866
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 732)
Show all sequences for reference 1
AUTHORS Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
Bennett,D.E., Puren,A. and Morris,L.
TITLE Antiretroviral drug resistance surveillance among drug-naive
HIV-1-infected individuals in Gauteng Province, South Africa in
2002 and 2004
JOURNAL Antivir. Ther. (Lond.) 13 SUPPL 2, 101-107 (2008)
PUBMED 18575198
REFERENCE 2 (bases 1 to 732)
Show all sequences for reference 2
AUTHORS Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
Bennette,D., Puren,A. and Morris,L.
TITLE Direct Submission
JOURNAL Submitted (24-NOV-2011) Aids Virus Research Unit, NICD, 1
Modderfontein Road, Sandringham, Gauteng 2131, South Africa
REFERENCE 3
Show all sequences for reference 3
AUTHORS Ledwaba,J., Sayed,Y., Pillay,V., Morris,L. and Hunt,G.
TITLE Low Frequency of Protease Inhibitor Resistance Mutations and
Insertions in HIV-1 Subtype C Protease Inhibitor-Naive Sequences.
JOURNAL AIDS Res. Hum. Retroviruses. 35(7); 673-678 (2019)
PUBMED 30793914
REFERENCE 4
Show all sequences for reference 4
AUTHORS Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
TITLE Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
Analysis.
JOURNAL EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
PUBMED 31143879
FEATURES Location/Qualifiers
source 1..1194
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="2002_7794"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="2002"
gene <1..>1194
/gene="pol"
CDS <1..>1194
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AFE55598.2"
/translation="PQITLWQRPLVSIKVGGQIKEALLDTGADDTVLEDINLPGRWKP
KMXGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNRRTQDFWEVQLGIPHPSGLKKKKSVTVLDVGDAYFSVP
LDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAKNPE
IIIYQYMDDLYVGSDLEIGPHRAKIEELREHLLKWGLTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYSGIKVKQLCKCJRGAKALTEIV
PLTEEA"
BASE COUNT 461 a 202 c 261 g 266 t 4 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtctcaataa aggtaggggg ccagataaag
61 gaagccctct tagacacagg agcagatgat acagtattag aagacataaa tttgccagga
121 agatggaagc caaaaatgay aggaggaatt ggaggtttta tcaaagtaag acagtatgat
181 caaatactta tagaaatttg tggaaaaaag gctataggca cagtattagt agggcctaca
241 cctgtcaaca taattggaag gaatatgttg actcagcttg gatgcacact aaattttcca
301 attagcccca ttgagactgt accagtaaaa ttgaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagcaatttg tgaagaaatg
421 gagaaggagg gaaaaattac aaaaattggg cctgagaatc catacaacac wccagtattt
481 gctataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaactcaat
541 agaagaactc aagacttttg ggaggttcag ttaggaatac cacacccatc agggttaaaa
601 aagaaaaaat cagtgacagt gttagatgtg ggggatgcat atttttcagt tcctttagat
661 gaagacttca ggaaatatac tgcattcacc atacctagta caaacaatga aacaccaggg
721 attagatatc aatataatgt gctaccacag ggatggaaag gatcaccagc matattccag
781 agtagcatga caaaaatctt agagcccttt agagcaaaaa atccagaaat aatcatctac
841 caatatatgg atgacttgta tgtaggatct gacttagaaa tagggccaca tagagcaaaa
901 atagaggagt taagagaaca tctattaaag tggggactta ccacaccaga caagaaacat
961 cagaaagaac ccccgtttct ttggatggga tatgaactcc atcctgacaa atggacagta
1021 cagcccatcc agctgccaga aaaggatagc tggactgtca atgatataca gaagttagta
1081 gggaaattaa actgggcaag tcagatttac tcagggatta aagtaaagca actttgtaaa
1141 tgcmttaggg gggccaaagc attaacagaa atagtaccac taactgaaga agca
//
last modified: Tue May 31 10:56 2022