View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS JN885716 1017 bp RNA linear VRL 19-DEC-2011
DEFINITION HIV-1 isolate 4472 from Thailand pol protein (pol) gene, partial
cds
ACCESSION JN885716
VERSION JN885716.1 GI:361584405
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1017)
Show all sequences for reference 1
AUTHORS Zhou,Z., Wagar,N., Devos,J.R., Rottinghaus,E., Diallo,K.,
Nguyen,D.B., Bassey,O., Ugbena,R., Wadonda-Kabondo,N.,
McConnell,M.S., Zulu,I., Chilima,B., Nkengasong,J. and Yang,C.
TITLE Optimization of a Low Cost and Broadly Sensitive Genotyping Assay
for HIV-1 Drug Resistance Surveillance and Monitoring in
Resource-Limited Settings
JOURNAL PLoS ONE 6 (11), E28184 (2011)
PUBMED 22132237
REFERENCE 2 (bases 1 to 1017)
Show all sequences for reference 2
AUTHORS Zhou,Z., Wagar,N., Devos,J.R., Rottinghaus,E., Diallo,K.,
Nguyen,D.B., Bassey,O., Ugbena,R., Wadonda-Kabondo,N.,
McConnell,M.S., Zulu,I., Chilima,B., Nkengasong,J. and Yang,C.
TITLE Direct Submission
JOURNAL Submitted (21-OCT-2011) CGH/DGHA/ILB, CDC, 1600 Clifton Rd,
Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..1017
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="4472"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Thailand"
/collection_date="21-Nov-2006"
gene <1..>1017
/gene="pol"
CDS <1..>1017
/gene="pol"
/note="protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEW12033.1"
/db_xref="GI:361584406"
/translation="WQRPLVAVKIGGQIKEALLDTGADDTVLEDINLPGKWKPKMIGG
IGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPIGTI
PVTLKPGMDGPKVKQWPLTEEKIKALTEICKEMEEEGKISKIGPENPYNTPVFAIKKK
DGXKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEXF
RKYTAFTIPSTBNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRIKNPEIVIYQ
YMDDLYVGSDLEIEQHRTKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELHPDRWT
VQPIE"
BASE COUNT 399 a 158 c 213 g 239 t 8 other
ORIGIN
1 tggcaacgac cccttgttgc agtaaaaata ggaggacaga taaaagaagc tctattagat
61 acaggagcag atgatacagt attagaagat ataaatttgc caggaaaatg gaaaccaaaa
121 atgatagggg gaattggagg ttttatcaag gtaaggcaat atgatcagat acttatagaa
181 atttgtggaa aaaaggctat aggtacagta ttagtaggac ctacacctgt caacataatt
241 ggacgaaata tgttgactca gattggttgt actttaaact tcccaattag tcctattggt
301 actataccag taacattaaa gccaggaatg gatggaccaa aggttaaaca atggccattg
361 acagaagaaa aaataaaagc attaacagaa atttgtaaag aaatggaaga ggaaggaaaa
421 atytcaaaaa ttgggcctga aaatccatac aayaccccag tatttgctat aaagaaaaag
481 gayggcamta aatggagaaa attagtagat ttcagagagc tcaataaaag aactcaggac
541 ttttgggaag ttcaattagg aataccacat ccagcaggtt taaaaaagaa aaaatcagta
601 acagtactag aygtgggaga tgcatatttt tcagttcctt tagatgaaar ctttagaaag
661 tatactgcat tcaccatacc tagtacarac aatgagacac caggaatcag atatcartac
721 aatgtgctgc cacagggatg gaaaggatca ccggcaatat ttcagagtag catgacaaaa
781 atcttagagc cctttagaat aaaaaatcca gaaatagtta tctatcaata catggatgac
841 ttgtatgtag gatctgattt agaaatagag cagcacagaa caaaaataga ggagctgaga
901 gctcatctat tgagctgggg atttactacc ccagacaaaa agcatcagaa ggaacctcca
961 ttcctttgga tgggatatga actccatcct gacaggtgga cagtccagcc tatagaa
//
last modified: Tue May 31 10:56 2022