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LOCUS	    JN885716		    1017 bp    RNA     linear	VRL 19-DEC-2011
DEFINITION  HIV-1 isolate 4472 from Thailand pol protein (pol) gene, partial
	    cds
ACCESSION   JN885716
VERSION     JN885716.1 GI:361584405
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1017)
            Show all sequences for reference 1
  AUTHORS   Zhou,Z., Wagar,N., Devos,J.R., Rottinghaus,E., Diallo,K.,
	    Nguyen,D.B., Bassey,O., Ugbena,R., Wadonda-Kabondo,N.,
	    McConnell,M.S., Zulu,I., Chilima,B., Nkengasong,J. and Yang,C.
  TITLE     Optimization of a Low Cost and Broadly Sensitive Genotyping Assay
	    for HIV-1 Drug Resistance Surveillance and Monitoring in
	    Resource-Limited Settings
  JOURNAL   PLoS ONE 6 (11), E28184 (2011)
  PUBMED    22132237
REFERENCE   2 (bases 1 to 1017)
            Show all sequences for reference 2
  AUTHORS   Zhou,Z., Wagar,N., Devos,J.R., Rottinghaus,E., Diallo,K.,
	    Nguyen,D.B., Bassey,O., Ugbena,R., Wadonda-Kabondo,N.,
	    McConnell,M.S., Zulu,I., Chilima,B., Nkengasong,J. and Yang,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-OCT-2011) CGH/DGHA/ILB, CDC, 1600 Clifton Rd,
	    Atlanta, GA 30333, USA
FEATURES             Location/Qualifiers
     source	     1..1017
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="4472"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Thailand"
		     /collection_date="21-Nov-2006"
     gene	     <1..>1017
		     /gene="pol"
     CDS	     <1..>1017
		     /gene="pol"
		     /note="protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEW12033.1"
		     /db_xref="GI:361584406"
		     /translation="WQRPLVAVKIGGQIKEALLDTGADDTVLEDINLPGKWKPKMIGG
		     IGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPIGTI
		     PVTLKPGMDGPKVKQWPLTEEKIKALTEICKEMEEEGKISKIGPENPYNTPVFAIKKK
		     DGXKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEXF
		     RKYTAFTIPSTBNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRIKNPEIVIYQ
		     YMDDLYVGSDLEIEQHRTKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELHPDRWT
		     VQPIE"
BASE COUNT	399 a	 158 c	  213 g    239 t      8 other
ORIGIN
       1 tggcaacgac cccttgttgc agtaaaaata ggaggacaga taaaagaagc tctattagat 
      61 acaggagcag atgatacagt attagaagat ataaatttgc caggaaaatg gaaaccaaaa 
     121 atgatagggg gaattggagg ttttatcaag gtaaggcaat atgatcagat acttatagaa 
     181 atttgtggaa aaaaggctat aggtacagta ttagtaggac ctacacctgt caacataatt 
     241 ggacgaaata tgttgactca gattggttgt actttaaact tcccaattag tcctattggt 
     301 actataccag taacattaaa gccaggaatg gatggaccaa aggttaaaca atggccattg 
     361 acagaagaaa aaataaaagc attaacagaa atttgtaaag aaatggaaga ggaaggaaaa 
     421 atytcaaaaa ttgggcctga aaatccatac aayaccccag tatttgctat aaagaaaaag 
     481 gayggcamta aatggagaaa attagtagat ttcagagagc tcaataaaag aactcaggac 
     541 ttttgggaag ttcaattagg aataccacat ccagcaggtt taaaaaagaa aaaatcagta 
     601 acagtactag aygtgggaga tgcatatttt tcagttcctt tagatgaaar ctttagaaag 
     661 tatactgcat tcaccatacc tagtacarac aatgagacac caggaatcag atatcartac 
     721 aatgtgctgc cacagggatg gaaaggatca ccggcaatat ttcagagtag catgacaaaa 
     781 atcttagagc cctttagaat aaaaaatcca gaaatagtta tctatcaata catggatgac 
     841 ttgtatgtag gatctgattt agaaatagag cagcacagaa caaaaataga ggagctgaga 
     901 gctcatctat tgagctgggg atttactacc ccagacaaaa agcatcagaa ggaacctcca 
     961 ttcctttgga tgggatatga actccatcct gacaggtgga cagtccagcc tatagaa
//
last modified: Tue May 31 10:56 2022


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