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LOCUS	    JN856545		     626 bp    RNA     linear	VRL 22-JUN-2013
DEFINITION  HIV-1 isolate 07V2seq13 from USA envelope glycoprotein (env) gene,
	    partial cds
ACCESSION   JN856545
VERSION     JN856545.1 GI:403115828
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 626)
            Show all sequences for reference 1
  AUTHORS   Bull,M.E., Heath,L.M., McKernan-Mullin,J.L., Kraft,K.M.,
	    Acevedo,L., Hitti,J.E., Cohn,S.E., Tapia,K.A., Holte,S.E.,
	    Dragavon,J.A., Coombs,R.W., Mullins,J.I. and Frenkel,L.M.
  TITLE     Human immunodeficiency viruses appear compartmentalized to the
	    female genital tract in cross-sectional analyses but genital
	    lineages do not persist over time
  JOURNAL   J. Infect. Dis. 207 (8), 1206-1215 (2013)
  PUBMED    23315326
REFERENCE   2 (bases 1 to 626)
            Show all sequences for reference 2
  AUTHORS   Bull,M., Heath,L., McKernan,J., Kraft,K., Acevedo,L., Hitti,J.,
	    Cohn,S., Tapia,K., Holte,S., Dragavon,J., Coombs,R., Mullins,J. and
	    Frenkel,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-OCT-2011) Infections and Prematurity, Seattle
	    Childrens Research Institute, 1900 Ninth Avenue, Seattle, WA
	    98101-1304, USA
FEATURES             Location/Qualifiers
     source	     1..626
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="07V2seq13"
		     /isolation_source="cervix"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="2005"
		     /note="subtype: B"
     gene	     <1..>626
		     /gene="env"
     CDS	     <1..>626
		     /gene="env"
		     /note="gp120"
		     /codon_start="2"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AFR23641.1"
		     /db_xref="GI:403115829"
		     /translation="EEEIVIRSENFTDNTKIIIVHLNESVDIHCMRPNNNTRRDIHLG
		     PGRAMYATGEIVGDIRQAHCNISEEKWNNTLKRIAIKLREQFVNKTINFTHSSGGDPE
		     IVMHSFNCGGEFFYCNTTKLFKGTWPWNGTWLFNDTWDNIQAGNDTRNITIPCRIKQI
		     INMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGNNTEIFRPGGGD"
BASE COUNT	257 a	  94 c	  125 g    150 t
ORIGIN
       1 agaagaagag atagtaatta gatctgaaaa tttcacagac aatactaaaa tcataatagt 
      61 acatctgaat gaatctgtag acattcattg tatgagaccc aacaacaaca caagaagaga 
     121 tatacactta ggaccaggca gagcaatgta tgcaacagga gaaatagtgg gagatataag 
     181 acaagcacac tgtaacatta gtgaagaaaa atggaacaac actttaaaaa gaatagctat 
     241 aaaattaaga gaacaatttg taaataaaac aataaacttt actcattcct caggaggaga 
     301 cccagaaatt gtaatgcaca gttttaactg tggaggggaa tttttctact gtaatacaac 
     361 aaaactgttt aaaggtactt ggccttggaa tggtacttgg ctatttaatg atacttggga 
     421 taatattcag gctgggaatg atactagaaa tatcacaatc ccatgcagaa taaaacaaat 
     481 tataaacatg tggcaagaag taggaaaagc aatgtatgcc cctcccatca gaggacaaat 
     541 tagatgttca tcaaatatta cagggctgct attaacaaga gatgggggta ataacaccga 
     601 gatattcaga cctggaggag gagata
//
last modified: Tue May 31 10:56 2022


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