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LOCUS JN856545 626 bp RNA linear VRL 22-JUN-2013
DEFINITION HIV-1 isolate 07V2seq13 from USA envelope glycoprotein (env) gene,
partial cds
ACCESSION JN856545
VERSION JN856545.1 GI:403115828
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 626)
Show all sequences for reference 1
AUTHORS Bull,M.E., Heath,L.M., McKernan-Mullin,J.L., Kraft,K.M.,
Acevedo,L., Hitti,J.E., Cohn,S.E., Tapia,K.A., Holte,S.E.,
Dragavon,J.A., Coombs,R.W., Mullins,J.I. and Frenkel,L.M.
TITLE Human immunodeficiency viruses appear compartmentalized to the
female genital tract in cross-sectional analyses but genital
lineages do not persist over time
JOURNAL J. Infect. Dis. 207 (8), 1206-1215 (2013)
PUBMED 23315326
REFERENCE 2 (bases 1 to 626)
Show all sequences for reference 2
AUTHORS Bull,M., Heath,L., McKernan,J., Kraft,K., Acevedo,L., Hitti,J.,
Cohn,S., Tapia,K., Holte,S., Dragavon,J., Coombs,R., Mullins,J. and
Frenkel,L.
TITLE Direct Submission
JOURNAL Submitted (14-OCT-2011) Infections and Prematurity, Seattle
Childrens Research Institute, 1900 Ninth Avenue, Seattle, WA
98101-1304, USA
FEATURES Location/Qualifiers
source 1..626
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="07V2seq13"
/isolation_source="cervix"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="2005"
/note="subtype: B"
gene <1..>626
/gene="env"
CDS <1..>626
/gene="env"
/note="gp120"
/codon_start="2"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AFR23641.1"
/db_xref="GI:403115829"
/translation="EEEIVIRSENFTDNTKIIIVHLNESVDIHCMRPNNNTRRDIHLG
PGRAMYATGEIVGDIRQAHCNISEEKWNNTLKRIAIKLREQFVNKTINFTHSSGGDPE
IVMHSFNCGGEFFYCNTTKLFKGTWPWNGTWLFNDTWDNIQAGNDTRNITIPCRIKQI
INMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGNNTEIFRPGGGD"
BASE COUNT 257 a 94 c 125 g 150 t
ORIGIN
1 agaagaagag atagtaatta gatctgaaaa tttcacagac aatactaaaa tcataatagt
61 acatctgaat gaatctgtag acattcattg tatgagaccc aacaacaaca caagaagaga
121 tatacactta ggaccaggca gagcaatgta tgcaacagga gaaatagtgg gagatataag
181 acaagcacac tgtaacatta gtgaagaaaa atggaacaac actttaaaaa gaatagctat
241 aaaattaaga gaacaatttg taaataaaac aataaacttt actcattcct caggaggaga
301 cccagaaatt gtaatgcaca gttttaactg tggaggggaa tttttctact gtaatacaac
361 aaaactgttt aaaggtactt ggccttggaa tggtacttgg ctatttaatg atacttggga
421 taatattcag gctgggaatg atactagaaa tatcacaatc ccatgcagaa taaaacaaat
481 tataaacatg tggcaagaag taggaaaagc aatgtatgcc cctcccatca gaggacaaat
541 tagatgttca tcaaatatta cagggctgct attaacaaga gatgggggta ataacaccga
601 gatattcaga cctggaggag gagata
//
last modified: Tue May 31 10:56 2022