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LOCUS JN856523 620 bp RNA linear VRL 22-JUN-2013
DEFINITION HIV-1 isolate 07V1seq5 from USA envelope glycoprotein (env) gene,
partial cds
ACCESSION JN856523
VERSION JN856523.1 GI:403115785
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 620)
Show all sequences for reference 1
AUTHORS Bull,M.E., Heath,L.M., McKernan-Mullin,J.L., Kraft,K.M.,
Acevedo,L., Hitti,J.E., Cohn,S.E., Tapia,K.A., Holte,S.E.,
Dragavon,J.A., Coombs,R.W., Mullins,J.I. and Frenkel,L.M.
TITLE Human immunodeficiency viruses appear compartmentalized to the
female genital tract in cross-sectional analyses but genital
lineages do not persist over time
JOURNAL J. Infect. Dis. 207 (8), 1206-1215 (2013)
PUBMED 23315326
REFERENCE 2 (bases 1 to 620)
Show all sequences for reference 2
AUTHORS Bull,M., Heath,L., McKernan,J., Kraft,K., Acevedo,L., Hitti,J.,
Cohn,S., Tapia,K., Holte,S., Dragavon,J., Coombs,R., Mullins,J. and
Frenkel,L.
TITLE Direct Submission
JOURNAL Submitted (14-OCT-2011) Infections and Prematurity, Seattle
Childrens Research Institute, 1900 Ninth Avenue, Seattle, WA
98101-1304, USA
FEATURES Location/Qualifiers
source 1..620
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="07V1seq5"
/isolation_source="cervix"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="2004"
/note="subtype: B"
gene <1..>620
/gene="env"
CDS <1..>620
/gene="env"
/note="gp120"
/codon_start="2"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AFR23620.1"
/db_xref="GI:403115786"
/translation="EKEIVIRSENFSDNAKIIIVHLNESVKIDCMRPNNNTRRGIHLG
PGEAMYATGAIVGDIRQAHCNISEEKWNNTLKRIAIKLREQFKNKTINFTRSSGGDPE
IVMHSFNCGGEFFYCNTTKLFNGILNDTWLFNGTGDSIQTGNGTKNITIPCRIKQIIN
MWQQVGKAMYAPPIRGQIRCSSNITGLLLTRDGGTDTEIFRPGGGD"
BASE COUNT 251 a 95 c 126 g 148 t
ORIGIN
1 agaaaaagag atagtaatta gatctgaaaa tttctcggac aatgctaaaa tcataatagt
61 acatctgaat gaatctgtaa aaattgattg tatgagaccc aacaacaaca caagaagagg
121 tatacactta ggaccaggcg aagcaatgta tgcaacagga gcaatagtgg gagatataag
181 acaagcacac tgtaacatta gtgaagaaaa atggaacaac actttaaaaa gaatagctat
241 aaaattaaga gaacaattta aaaataaaac aataaacttt actcgttcct caggaggaga
301 cccagaaatt gtaatgcaca gttttaactg tggaggggaa tttttctact gtaatacaac
361 aaaactgttt aacggtattt tgaatgatac ttggctattt aatggtactg gggatagtat
421 tcagactggg aatggtacta aaaatatcac aatcccatgc agaataaaac aaattataaa
481 catgtggcaa caagtaggaa aagcaatgta tgcccctccc atcagaggac aaattagatg
541 ttcatcaaat attacagggc tgctattaac aagagatggg ggtaccgaca ccgagatctt
601 cagacctgga ggaggggata
//
last modified: Tue May 31 10:56 2022