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LOCUS	    JN856523		     620 bp    RNA     linear	VRL 22-JUN-2013
DEFINITION  HIV-1 isolate 07V1seq5 from USA envelope glycoprotein (env) gene,
	    partial cds
ACCESSION   JN856523
VERSION     JN856523.1 GI:403115785
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 620)
            Show all sequences for reference 1
  AUTHORS   Bull,M.E., Heath,L.M., McKernan-Mullin,J.L., Kraft,K.M.,
	    Acevedo,L., Hitti,J.E., Cohn,S.E., Tapia,K.A., Holte,S.E.,
	    Dragavon,J.A., Coombs,R.W., Mullins,J.I. and Frenkel,L.M.
  TITLE     Human immunodeficiency viruses appear compartmentalized to the
	    female genital tract in cross-sectional analyses but genital
	    lineages do not persist over time
  JOURNAL   J. Infect. Dis. 207 (8), 1206-1215 (2013)
  PUBMED    23315326
REFERENCE   2 (bases 1 to 620)
            Show all sequences for reference 2
  AUTHORS   Bull,M., Heath,L., McKernan,J., Kraft,K., Acevedo,L., Hitti,J.,
	    Cohn,S., Tapia,K., Holte,S., Dragavon,J., Coombs,R., Mullins,J. and
	    Frenkel,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-OCT-2011) Infections and Prematurity, Seattle
	    Childrens Research Institute, 1900 Ninth Avenue, Seattle, WA
	    98101-1304, USA
FEATURES             Location/Qualifiers
     source	     1..620
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="07V1seq5"
		     /isolation_source="cervix"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="2004"
		     /note="subtype: B"
     gene	     <1..>620
		     /gene="env"
     CDS	     <1..>620
		     /gene="env"
		     /note="gp120"
		     /codon_start="2"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AFR23620.1"
		     /db_xref="GI:403115786"
		     /translation="EKEIVIRSENFSDNAKIIIVHLNESVKIDCMRPNNNTRRGIHLG
		     PGEAMYATGAIVGDIRQAHCNISEEKWNNTLKRIAIKLREQFKNKTINFTRSSGGDPE
		     IVMHSFNCGGEFFYCNTTKLFNGILNDTWLFNGTGDSIQTGNGTKNITIPCRIKQIIN
		     MWQQVGKAMYAPPIRGQIRCSSNITGLLLTRDGGTDTEIFRPGGGD"
BASE COUNT	251 a	  95 c	  126 g    148 t
ORIGIN
       1 agaaaaagag atagtaatta gatctgaaaa tttctcggac aatgctaaaa tcataatagt 
      61 acatctgaat gaatctgtaa aaattgattg tatgagaccc aacaacaaca caagaagagg 
     121 tatacactta ggaccaggcg aagcaatgta tgcaacagga gcaatagtgg gagatataag 
     181 acaagcacac tgtaacatta gtgaagaaaa atggaacaac actttaaaaa gaatagctat 
     241 aaaattaaga gaacaattta aaaataaaac aataaacttt actcgttcct caggaggaga 
     301 cccagaaatt gtaatgcaca gttttaactg tggaggggaa tttttctact gtaatacaac 
     361 aaaactgttt aacggtattt tgaatgatac ttggctattt aatggtactg gggatagtat 
     421 tcagactggg aatggtacta aaaatatcac aatcccatgc agaataaaac aaattataaa 
     481 catgtggcaa caagtaggaa aagcaatgta tgcccctccc atcagaggac aaattagatg 
     541 ttcatcaaat attacagggc tgctattaac aagagatggg ggtaccgaca ccgagatctt 
     601 cagacctgga ggaggggata 
//
last modified: Tue May 31 10:56 2022


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