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LOCUS JN820400 297 bp RNA linear VRL 28-NOV-2011
DEFINITION HIV-1 isolate Primer ID AAGAATGG_T1_5 from USA protease (pol) gene,
partial cds
ACCESSION JN820400
VERSION JN820400.1 GI:358013697
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 297)
Show all sequences for reference 1
AUTHORS Jabara,C.B., Jones,C.D., Roach,J., Anderson,J.A. and Swanstrom,R.
TITLE Accurate sampling and deep sequencing of the HIV-1 protease gene
using a Primer ID.
JOURNAL Proc. Natl. Acad. Sci. U. S. A.. 108(50); 20166-71 (2011)
PUBMED 22135472
REFERENCE 2 (bases 1 to 297)
Show all sequences for reference 2
AUTHORS Jabara,C.B., Jones,C.D., Roach,J., Anderson,J.A. and Swanstrom,R.
TITLE Direct Submission
JOURNAL Submitted (06-OCT-2011) Department of Biology, Lineberger
Comprehensive Cancer Center, UNC Center for AIDS Research,
University of North Carolina at Chapel Hill, CB 7295, Chapel Hill,
NC 27599-7295, USA
FEATURES Location/Qualifiers
source 1..297
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="Primer ID AAGAATGG_T1_5"
/isolation_source="blood plasma from ABT-538 patient 1024
pre-ritonavir monotherapy"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="05-Jul-1995"
/note="sequenced by GS FLX platform with XLR70 Titanium
sequencing chemistry; represents the consensus of 5
individual reads; assembled by a custom bioinformatics
suite subtype: B; group: M"
gene <1..>297
/gene="pol"
CDS <1..>297
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="protease"
/protein_id="AET99368.1"
/db_xref="GI:358013698"
/translation="PQITLWQRPLVTIKIGGQIKEALLDTGADDTVLEEMNLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF"
BASE COUNT 114 a 46 c 62 g 75 t
ORIGIN
1 cctcaaatca ctctttggca acgacccctc gtcacaataa agataggggg gcaaataaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgaa tttgccagga
121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat
181 caaatactca tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatctattg actcagattg gttgcacttt aaatttt
//
last modified: Tue May 31 10:56 2022