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LOCUS JN786771 2716 bp DNA linear VRL 30-OCT-2011
DEFINITION HIV-1 clone 10017FL16-6-41.EPI from USA envelope glycoprotein gene,
complete cds
ACCESSION JN786771
VERSION JN786771.1 GI:353741569
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2716)
Show all sequences for reference 1
AUTHORS Gonzalez-Perez,M.P., O'Connell,O., Lin,R., Sullivan,W.M., Bell,J.,
Simmonds,P. and Clapham,P.R.
TITLE Independent evolution of macrophage-tropism and increased charge
between HIV-1 R5 envelopes present in brain and immune tissue.
JOURNAL Retrovirology. 2012 Mar 15;9:20. doi: 10.1186/1742-4690-9-20.
PUBMED 22420378
REFERENCE 2 (bases 1 to 2716)
Show all sequences for reference 2
AUTHORS Gonzalez-Perez,M.P., O'Connell,O., Lin,R., Sullivan,W.M., Bell,J.,
Simmonds,P. and Clapham,P.R.
TITLE Direct Submission
JOURNAL Submitted (23-SEP-2011) Program in Molecular Medicine and
Department of Medical School, University of Massachusetts Medical
School, 373 Plantation Street Biotech II Suite 315, Worcester, MA
01605, USA
FEATURES Location/Qualifiers
source 1..2716
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolation_source="patient 10017 frontal lobe"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="10017FL16-6-41.EPI"
/country="USA"
/collection_date="1999"
/note="subtype: B"
CDS 1..2586
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AER22490.1"
/db_xref="GI:353741570"
/translation="MRVKGIKKNCQRLWKWGMMLLGILMICSAADQLWVTVYYGVPVW
KEATTTLFCASEAKAYEKEVHNVWATHACVPTDPNPQEIKLENVTENFNMWKNDMVEQ
MHEDIISLWDESLKPCVKLTPLCVTLTCSDYLENKTNSDNSTNNNRNSSLEGMDKGEI
KNCAFNITTDIGDKMQKVNATFYKLDIVPIDRDNISYRLISCNTSVIKQACPKVSFEP
IPIHYCAPAGFAILKCNDKRFNGTGPCRNVSTVQCTHGIRPVVTTQLLLNGSLAEEEI
VIRSENFTDNVKTIIVQLKMPVTIECIRPNNNTRRGIHIGPGSAMFTTGDIIGKIRQA
HCNISRADWNNTLRQIANKLGNQFMNRTIIFDQSSGGDPEIVTHSFNCGGEFFYCNTA
ELFNSTWNVSTWNVNSTWNGTDRSNITLPCRIKQFINMWQEVGKAMYAPPISGIIRCK
SNITGLLLTRDGGINNTTNKSEIFRPIGGDMKNNWRSELYKYKVVKIEPLGVAPTKAR
RRVVQREKRAALGAVFLGFLGAAGSTMGAASMTLTVQARLLLSGIVQQQSNLLRAIEA
QQHLLKLTVWGIKQLQARVLALERYLRDQQLLGIWGCSGKLICTTAVSWNASWSNKSL
DKIWENMTWMEWEREIDNYTGLIYSLLEESQNQQEKNEQDLLQLDTWASLWNWFDISK
WLWYIKIFIMIIGGLIGLRIVFTVLSIVHRVRQGYSPLSLQTLLPAARGPDRPEGIGE
EGGERDRDRSDRSVNGFLTLIWVDLRSLFLFSYHSLRDSLLIVTRTVTLLGRRGWELL
KYWWNLLQYWGQELKNSAVSLFNATSIAVAEGTDRVIEVFQRVFRALLHIPRRIRQGA
ERLLL"
BASE COUNT 926 a 446 c 667 g 677 t
ORIGIN
1 atgagagtga aggggatcaa gaagaattgt cagcgcttgt ggaaatgggg catgatgctc
61 cttgggatat tgatgatctg tagtgctgca gatcagttgt gggtcacagt ctattatgga
121 gtacctgtgt ggaaagaagc aaccaccact ttattttgtg catcagaggc taaagcatat
181 gagaaagagg tacataatgt ttgggccaca catgcctgtg tacccacaga ccccaatcca
241 caagaaataa aattagaaaa tgtgacagaa aattttaaca tgtggaaaaa tgacatggta
301 gaacagatgc atgaggatat aatcagttta tgggatgaaa gcctaaagcc atgtgtaaaa
361 ttaaccccac tctgtgttac cttaacgtgc tctgattatt tggaaaataa gactaacagt
421 gataatagta ctaataataa cagaaatagt agtttggaag ggatggataa aggagaaata
481 aaaaactgcg ctttcaatat caccacagat ataggagata agatgcagaa agtaaacgca
541 actttttata agcttgatat agtaccaata gatagagata atattagcta taggttgata
601 agttgtaaca cttcagtcat taaacaggcc tgtccaaagg tatcctttga gccaattccc
661 atacattatt gtgccccggc tggttttgcg attctaaagt gtaacgataa gaggttcaat
721 ggaacaggac catgcagaaa tgtcagcaca gtacaatgca cacatggaat taggccagta
781 gtgacaactc agctgctgtt aaatggcagt ctagcagaag aagagatagt aattagatct
841 gaaaatttca cagacaatgt taaaaccata atagtacagc tgaaaatgcc tgtaacaatt
901 gagtgtataa gacccaacaa caatacaaga aggggtatac atataggacc agggagtgca
961 atgtttacaa caggagatat aataggaaag ataagacaag cacattgtaa cattagtaga
1021 gcagactgga ataacacttt aagacagata gctaacaaat taggaaacca atttatgaat
1081 agaacaataa tctttgatca gtcctcagga ggggatccag aaattgtaac gcacagtttt
1141 aattgtggag gagaattttt ctactgtaat acagcagaac tgtttaatag tacttggaat
1201 gttagtactt ggaatgttaa tagtacttgg aatggtactg ataggtcaaa tatcacactc
1261 ccatgcagaa taaaacaatt tataaacatg tggcaggaag taggaaaagc aatgtatgcc
1321 cctcccatca gtggaataat tagatgtaaa tcaaatatta cagggctgct attaacgagg
1381 gatggtggta ttaataatac cacgaacaag tctgagattt tcagacctat aggaggagat
1441 atgaaaaaca attggagaag tgaattatat aaatataaag tagtaaaaat tgaaccatta
1501 ggagtagcac ccaccaaggc aaggagaaga gtggtgcaga gagaaaaaag agcagcactg
1561 ggagctgtgt tccttgggtt cttgggagca gcaggaagca ctatgggcgc agcgtcaatg
1621 acgctgacgg tacaggccag actattattg tctggtatag tgcaacagca gagtaatttg
1681 ctgagagcta ttgaggcgca acagcatctg ttgaaactca cagtctgggg cattaagcag
1741 ctccaggcaa gagtcctggc tctagaaaga tacctaaggg atcaacagct cctagggatt
1801 tggggctgct ctggaaaact catttgcacc actgctgtgt cttggaatgc tagttggagt
1861 aataaatctc tggataagat ttgggaaaac atgacctgga tggagtggga aagagagatt
1921 gacaattaca caggcttaat atactcctta cttgaagaat cgcagaacca acaagaaaag
1981 aatgaacaag atttattgca attagataca tgggcaagtt tgtggaattg gtttgacata
2041 tcaaaatggc tgtggtatat aaaaatattc ataatgataa taggaggctt gataggttta
2101 agaatagttt ttactgtact ttctatagtg catagagtta ggcagggata ctcaccatta
2161 tcgttgcaga ccctcctccc agcagcgagg ggacccgaca ggcccgaagg aatcggagaa
2221 gaaggtggag agagagacag agacagatcc gatcgatcag tgaacggatt cttgacactt
2281 atctgggtcg atctacggag cctgttcctc ttcagctacc acagcttgag agactcactc
2341 ttgattgtaa cgaggactgt gacacttctg ggacgcaggg ggtgggaact cctcaaatat
2401 tggtggaatc tcctacagta ttggggtcag gaactaaaga atagtgctgt tagcttgttc
2461 aatgcaacat ctatcgcagt agctgagggg acagataggg ttatagaagt attccaaaga
2521 gtttttagag cccttctcca catacctaga agaataagac agggcgcaga aaggcttttg
2581 ctataacttt tgctataaga tgggtggcaa gtggtcaaaa tgtagtgtgg ttggatggcc
2641 tgctgtgagg gaaagaatga gacgagttga gccagcagca gatggggtgg gagcagtatc
2701 tcgagacgga tccagc
//
last modified: Tue May 31 10:56 2022