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LOCUS	    JN786771		    2716 bp    DNA     linear	VRL 30-OCT-2011
DEFINITION  HIV-1 clone 10017FL16-6-41.EPI from USA envelope glycoprotein gene,
	    complete cds
ACCESSION   JN786771
VERSION     JN786771.1 GI:353741569
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2716)
            Show all sequences for reference 1
  AUTHORS   Gonzalez-Perez,M.P., O'Connell,O., Lin,R., Sullivan,W.M., Bell,J.,
	    Simmonds,P. and Clapham,P.R.
  TITLE     Independent evolution of macrophage-tropism and increased charge
	    between HIV-1 R5 envelopes present in brain and immune tissue.
  JOURNAL   Retrovirology. 2012 Mar 15;9:20. doi: 10.1186/1742-4690-9-20.
  PUBMED    22420378
REFERENCE   2 (bases 1 to 2716)
            Show all sequences for reference 2
  AUTHORS   Gonzalez-Perez,M.P., O'Connell,O., Lin,R., Sullivan,W.M., Bell,J.,
	    Simmonds,P. and Clapham,P.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-SEP-2011) Program in Molecular Medicine and
	    Department of Medical School, University of Massachusetts Medical
	    School, 373 Plantation Street Biotech II Suite 315, Worcester, MA
	    01605, USA
FEATURES             Location/Qualifiers
     source	     1..2716
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolation_source="patient 10017 frontal lobe"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="10017FL16-6-41.EPI"
		     /country="USA"
		     /collection_date="1999"
		     /note="subtype: B"
     CDS	     1..2586
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AER22490.1"
		     /db_xref="GI:353741570"
		     /translation="MRVKGIKKNCQRLWKWGMMLLGILMICSAADQLWVTVYYGVPVW
		     KEATTTLFCASEAKAYEKEVHNVWATHACVPTDPNPQEIKLENVTENFNMWKNDMVEQ
		     MHEDIISLWDESLKPCVKLTPLCVTLTCSDYLENKTNSDNSTNNNRNSSLEGMDKGEI
		     KNCAFNITTDIGDKMQKVNATFYKLDIVPIDRDNISYRLISCNTSVIKQACPKVSFEP
		     IPIHYCAPAGFAILKCNDKRFNGTGPCRNVSTVQCTHGIRPVVTTQLLLNGSLAEEEI
		     VIRSENFTDNVKTIIVQLKMPVTIECIRPNNNTRRGIHIGPGSAMFTTGDIIGKIRQA
		     HCNISRADWNNTLRQIANKLGNQFMNRTIIFDQSSGGDPEIVTHSFNCGGEFFYCNTA
		     ELFNSTWNVSTWNVNSTWNGTDRSNITLPCRIKQFINMWQEVGKAMYAPPISGIIRCK
		     SNITGLLLTRDGGINNTTNKSEIFRPIGGDMKNNWRSELYKYKVVKIEPLGVAPTKAR
		     RRVVQREKRAALGAVFLGFLGAAGSTMGAASMTLTVQARLLLSGIVQQQSNLLRAIEA
		     QQHLLKLTVWGIKQLQARVLALERYLRDQQLLGIWGCSGKLICTTAVSWNASWSNKSL
		     DKIWENMTWMEWEREIDNYTGLIYSLLEESQNQQEKNEQDLLQLDTWASLWNWFDISK
		     WLWYIKIFIMIIGGLIGLRIVFTVLSIVHRVRQGYSPLSLQTLLPAARGPDRPEGIGE
		     EGGERDRDRSDRSVNGFLTLIWVDLRSLFLFSYHSLRDSLLIVTRTVTLLGRRGWELL
		     KYWWNLLQYWGQELKNSAVSLFNATSIAVAEGTDRVIEVFQRVFRALLHIPRRIRQGA
		     ERLLL"
BASE COUNT	926 a	 446 c	  667 g    677 t
ORIGIN
       1 atgagagtga aggggatcaa gaagaattgt cagcgcttgt ggaaatgggg catgatgctc 
      61 cttgggatat tgatgatctg tagtgctgca gatcagttgt gggtcacagt ctattatgga 
     121 gtacctgtgt ggaaagaagc aaccaccact ttattttgtg catcagaggc taaagcatat 
     181 gagaaagagg tacataatgt ttgggccaca catgcctgtg tacccacaga ccccaatcca 
     241 caagaaataa aattagaaaa tgtgacagaa aattttaaca tgtggaaaaa tgacatggta 
     301 gaacagatgc atgaggatat aatcagttta tgggatgaaa gcctaaagcc atgtgtaaaa 
     361 ttaaccccac tctgtgttac cttaacgtgc tctgattatt tggaaaataa gactaacagt 
     421 gataatagta ctaataataa cagaaatagt agtttggaag ggatggataa aggagaaata 
     481 aaaaactgcg ctttcaatat caccacagat ataggagata agatgcagaa agtaaacgca 
     541 actttttata agcttgatat agtaccaata gatagagata atattagcta taggttgata 
     601 agttgtaaca cttcagtcat taaacaggcc tgtccaaagg tatcctttga gccaattccc 
     661 atacattatt gtgccccggc tggttttgcg attctaaagt gtaacgataa gaggttcaat 
     721 ggaacaggac catgcagaaa tgtcagcaca gtacaatgca cacatggaat taggccagta 
     781 gtgacaactc agctgctgtt aaatggcagt ctagcagaag aagagatagt aattagatct 
     841 gaaaatttca cagacaatgt taaaaccata atagtacagc tgaaaatgcc tgtaacaatt 
     901 gagtgtataa gacccaacaa caatacaaga aggggtatac atataggacc agggagtgca 
     961 atgtttacaa caggagatat aataggaaag ataagacaag cacattgtaa cattagtaga 
    1021 gcagactgga ataacacttt aagacagata gctaacaaat taggaaacca atttatgaat 
    1081 agaacaataa tctttgatca gtcctcagga ggggatccag aaattgtaac gcacagtttt 
    1141 aattgtggag gagaattttt ctactgtaat acagcagaac tgtttaatag tacttggaat 
    1201 gttagtactt ggaatgttaa tagtacttgg aatggtactg ataggtcaaa tatcacactc 
    1261 ccatgcagaa taaaacaatt tataaacatg tggcaggaag taggaaaagc aatgtatgcc 
    1321 cctcccatca gtggaataat tagatgtaaa tcaaatatta cagggctgct attaacgagg 
    1381 gatggtggta ttaataatac cacgaacaag tctgagattt tcagacctat aggaggagat 
    1441 atgaaaaaca attggagaag tgaattatat aaatataaag tagtaaaaat tgaaccatta 
    1501 ggagtagcac ccaccaaggc aaggagaaga gtggtgcaga gagaaaaaag agcagcactg 
    1561 ggagctgtgt tccttgggtt cttgggagca gcaggaagca ctatgggcgc agcgtcaatg 
    1621 acgctgacgg tacaggccag actattattg tctggtatag tgcaacagca gagtaatttg 
    1681 ctgagagcta ttgaggcgca acagcatctg ttgaaactca cagtctgggg cattaagcag 
    1741 ctccaggcaa gagtcctggc tctagaaaga tacctaaggg atcaacagct cctagggatt 
    1801 tggggctgct ctggaaaact catttgcacc actgctgtgt cttggaatgc tagttggagt 
    1861 aataaatctc tggataagat ttgggaaaac atgacctgga tggagtggga aagagagatt 
    1921 gacaattaca caggcttaat atactcctta cttgaagaat cgcagaacca acaagaaaag 
    1981 aatgaacaag atttattgca attagataca tgggcaagtt tgtggaattg gtttgacata 
    2041 tcaaaatggc tgtggtatat aaaaatattc ataatgataa taggaggctt gataggttta 
    2101 agaatagttt ttactgtact ttctatagtg catagagtta ggcagggata ctcaccatta 
    2161 tcgttgcaga ccctcctccc agcagcgagg ggacccgaca ggcccgaagg aatcggagaa 
    2221 gaaggtggag agagagacag agacagatcc gatcgatcag tgaacggatt cttgacactt 
    2281 atctgggtcg atctacggag cctgttcctc ttcagctacc acagcttgag agactcactc 
    2341 ttgattgtaa cgaggactgt gacacttctg ggacgcaggg ggtgggaact cctcaaatat 
    2401 tggtggaatc tcctacagta ttggggtcag gaactaaaga atagtgctgt tagcttgttc 
    2461 aatgcaacat ctatcgcagt agctgagggg acagataggg ttatagaagt attccaaaga 
    2521 gtttttagag cccttctcca catacctaga agaataagac agggcgcaga aaggcttttg 
    2581 ctataacttt tgctataaga tgggtggcaa gtggtcaaaa tgtagtgtgg ttggatggcc 
    2641 tgctgtgagg gaaagaatga gacgagttga gccagcagca gatggggtgg gagcagtatc 
    2701 tcgagacgga tccagc
//
last modified: Tue May 31 10:56 2022


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