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LOCUS JN786722 2686 bp DNA linear VRL 30-OCT-2011
DEFINITION HIV-1 clone 6568SP6-56-145.PRO from USA envelope glycoprotein gene,
complete cds
ACCESSION JN786722
VERSION JN786722.1 GI:353741483
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2686)
Show all sequences for reference 1
AUTHORS Gonzalez-Perez,M.P., O'Connell,O., Lin,R., Sullivan,W.M., Bell,J.,
Simmonds,P. and Clapham,P.R.
TITLE Independent evolution of macrophage-tropism and increased charge
between HIV-1 R5 envelopes present in brain and immune tissue.
JOURNAL Retrovirology. 2012 Mar 15;9:20. doi: 10.1186/1742-4690-9-20.
PUBMED 22420378
REFERENCE 2 (bases 1 to 2686)
Show all sequences for reference 2
AUTHORS Gonzalez-Perez,M.P., O'Connell,O., Lin,R., Sullivan,W.M., Bell,J.,
Simmonds,P. and Clapham,P.R.
TITLE Direct Submission
JOURNAL Submitted (23-SEP-2011) Program in Molecular Medicine and
Department of Medical School, University of Massachusetts Medical
School, 373 Plantation Street Biotech II Suite 315, Worcester, MA
01605, USA
FEATURES Location/Qualifiers
source 1..2686
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolation_source="patient 6568 spleen"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="6568SP6-56-145.PRO"
/country="USA"
/collection_date="2001"
/note="subtype: B"
CDS 1..2568
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AER22453.1"
/db_xref="GI:353741484"
/translation="MRVKGIRKNYQHWWKGGILLLGMLMICRAEKDKWVTVYYGVPVW
KEANTTLFCASDAKAYSIEAHNVWATHACVPTDPNPQEIVLGNVTETFNVWKNNMVDQ
MHGDIISLWDQSLKPCVKLTPLCVTLNCTNVKSNGTSPPTTSSSWKTVKEGEIKNCSF
NITTDMKEKVEKKHAIFYDLDVMPLDNSSNSYRLISCNTSRITQACPKISFEPIPIHY
CAPAGFAILKCNDKKFNKTGHCQNVSTVQCTHGIKPVVSTQLLLNGSLVEQDVEIRSE
NFTNNAKTIIVQLKDPVEISCARPNNNTRDSIHMGPGKAFYTTGDIIGDIRQAHCNIS
EAKWNKTLEQVVGKLREQFGNKIIKFNQSSGGDPEITMHSFNCRGEFFYCNTTKLFNS
VWNATARNSTQNITEGNETIILPCRIKQIINMWQQVGKAMYAPPISGLLNCTSNITGL
LITRDGGNNEDNNTETFRPGGGDMRDNWRSELYKYKVVRIEPIGIAPTEAKRRVVQRE
KRAVGIGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQ
LTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTAVPWNNSWSDKNLSTIWET
MTWMQWEKEIDNYTDIIYSLIEESQNQQEKNEEDLLKLDSWASLWNWFSISKWLWYIK
IFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTHHPAPRGPDRPEGIEEESGDRD
RDRSIPLAGGFLEIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWELLKYWWNL
LQYWSQELKNSAISLLNVTAIAVAEGTDRIIEVAQRAFRAILHIPRRIRQGLERALL"
BASE COUNT 942 a 475 c 637 g 632 t
ORIGIN
1 atgagagtga aggggatcag gaagaattat cagcactggt ggaaaggggg catcttgctc
61 cttgggatgt taatgatctg tagggctgaa aaagacaagt gggtcacagt ttattatgga
121 gtacctgtgt ggaaagaagc aaacaccact ctattctgtg cctcagatgc taaagcatat
181 tcaatagagg cacataatgt ttgggccaca catgcctgtg tacccacaga ccccaaccca
241 caagaaatag tattgggaaa tgtgacagaa acttttaatg tgtggaaaaa taacatggta
301 gatcagatgc atggggatat aatcagttta tgggatcaaa gcctaaagcc atgtgtaaaa
361 ttaaccccac tctgtgttac tttaaattgc accaatgtga agagtaatgg tacttccccc
421 cctactacta gtagtagctg gaaaacagtg aaggaaggag aaataaaaaa ctgctctttc
481 aatattacca cagacatgaa agaaaaggta gagaaaaaac atgcaatttt ttatgacctt
541 gatgtaatgc cactagataa ttccagcaac agctataggt tgataagttg taacacctca
601 cgcattacac aggcctgtcc aaagatatcc tttgaaccaa ttcccataca ttattgtgcc
661 ccggctggtt ttgcgattct aaaatgtaat gataagaagt tcaataaaac aggacattgt
721 caaaatgtca gcacagtaca atgtacacat ggaattaagc cagtagtatc aactcaactg
781 ctgttaaatg gcagtctagt agaacaagat gtagaaatta gatctgaaaa tttcacgaac
841 aatgctaaaa ccataatagt acagctgaaa gatcctgtag aaattagttg tgcaagaccc
901 aacaacaata caagggacag tatacatatg ggaccaggaa aagcatttta tacaacagga
961 gacataatag gagatataag acaagcacat tgcaacatta gtgaagcaaa atggaataaa
1021 actttagaac aggtggttgg taaattaaga gaacaatttg ggaataaaat aataaagttt
1081 aatcaatcct caggagggga cccagaaatt acaatgcaca gttttaattg tagaggggaa
1141 tttttctact gtaatacaac aaaactgttt aatagtgttt ggaatgctac tgcaagaaat
1201 agcactcaga atattactga aggaaatgag acaatcatac tcccgtgcag aataaaacaa
1261 attataaaca tgtggcagca agtaggaaaa gcaatgtatg cccctcccat tagtggacta
1321 cttaattgta catcaaatat tacaggacta ctaataacaa gagatggtgg taataatgag
1381 gacaacaaca cagagacctt cagacctgga ggaggagata tgagggacaa ttggagaagt
1441 gaattatata aatataaagt agtaagaatt gaaccaatag gcatagcacc caccgaggca
1501 aagagaagag tggtgcagag agaaaaaaga gcagtgggaa taggagcttt gttccttggg
1561 ttcttgggag cagcaggaag cactatgggc gcagcgtcaa taacgctgac ggtacaggcc
1621 agacaattat tgtctggtat agtgcaacag cagaacaacc tgctgagggc tattgaggcg
1681 caacagcata tgttgcaact cacagtctgg ggcatcaagc agctccaggc aagagtccta
1741 gctgtagaaa gatacctaag ggatcaacag ctcctgggga tttggggttg ctctggaaaa
1801 ctcatctgca ccactgctgt gccttggaat aacagttgga gtgataaaaa tctgagtacc
1861 atttgggaaa ccatgacctg gatgcagtgg gaaaaagaaa ttgacaatta cacagacata
1921 atatacagct taattgaaga atcgcagaac cagcaagaaa agaatgaaga ggacttatta
1981 aaattggatt catgggcaag tttgtggaat tggtttagca tatcaaaatg gctgtggtat
2041 ataaaaatat tcataatgat agtaggaggc ttgataggtt taagaatagt ttttactgta
2101 ctttctatag taaatagagt taggcaggga tactcaccct tatcgtttca gacccaccac
2161 ccagccccga ggggacccga caggcccgaa ggaatcgaag aagaaagtgg agacagagac
2221 agagacagat ccattccatt agcgggtgga ttcttagaaa tcatctgggt cgacctgcgg
2281 agcctgtgcc tcttcagcta ccaccgcttg agagacttac tcttgattgt aacgaggatt
2341 gtggaacttc tgggacgcag ggggtgggaa ctcctcaaat attggtggaa cctcctccag
2401 tattggagtc aggaactaaa gaatagtgct attagcttgc tcaacgtcac agccatagca
2461 gtagctgagg gaacagatag aattatagaa gtagcacaaa gagcctttag agctatcctc
2521 cacataccta gaagaataag acagggcttg gaaagggctt tgctataaga tgggtggcaa
2581 gtggtcaaaa cgtagtgtgc ctggatggtc tactataagg gaaagaatga aacgagctga
2641 accagcagca gttggggtgg gagcagtatc tcgagacgga tccagc
//
last modified: Tue May 31 10:56 2022