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LOCUS	    JN786722		    2686 bp    DNA     linear	VRL 30-OCT-2011
DEFINITION  HIV-1 clone 6568SP6-56-145.PRO from USA envelope glycoprotein gene,
	    complete cds
ACCESSION   JN786722
VERSION     JN786722.1 GI:353741483
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2686)
            Show all sequences for reference 1
  AUTHORS   Gonzalez-Perez,M.P., O'Connell,O., Lin,R., Sullivan,W.M., Bell,J.,
	    Simmonds,P. and Clapham,P.R.
  TITLE     Independent evolution of macrophage-tropism and increased charge
	    between HIV-1 R5 envelopes present in brain and immune tissue.
  JOURNAL   Retrovirology. 2012 Mar 15;9:20. doi: 10.1186/1742-4690-9-20.
  PUBMED    22420378
REFERENCE   2 (bases 1 to 2686)
            Show all sequences for reference 2
  AUTHORS   Gonzalez-Perez,M.P., O'Connell,O., Lin,R., Sullivan,W.M., Bell,J.,
	    Simmonds,P. and Clapham,P.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-SEP-2011) Program in Molecular Medicine and
	    Department of Medical School, University of Massachusetts Medical
	    School, 373 Plantation Street Biotech II Suite 315, Worcester, MA
	    01605, USA
FEATURES             Location/Qualifiers
     source	     1..2686
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolation_source="patient 6568 spleen"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="6568SP6-56-145.PRO"
		     /country="USA"
		     /collection_date="2001"
		     /note="subtype: B"
     CDS	     1..2568
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AER22453.1"
		     /db_xref="GI:353741484"
		     /translation="MRVKGIRKNYQHWWKGGILLLGMLMICRAEKDKWVTVYYGVPVW
		     KEANTTLFCASDAKAYSIEAHNVWATHACVPTDPNPQEIVLGNVTETFNVWKNNMVDQ
		     MHGDIISLWDQSLKPCVKLTPLCVTLNCTNVKSNGTSPPTTSSSWKTVKEGEIKNCSF
		     NITTDMKEKVEKKHAIFYDLDVMPLDNSSNSYRLISCNTSRITQACPKISFEPIPIHY
		     CAPAGFAILKCNDKKFNKTGHCQNVSTVQCTHGIKPVVSTQLLLNGSLVEQDVEIRSE
		     NFTNNAKTIIVQLKDPVEISCARPNNNTRDSIHMGPGKAFYTTGDIIGDIRQAHCNIS
		     EAKWNKTLEQVVGKLREQFGNKIIKFNQSSGGDPEITMHSFNCRGEFFYCNTTKLFNS
		     VWNATARNSTQNITEGNETIILPCRIKQIINMWQQVGKAMYAPPISGLLNCTSNITGL
		     LITRDGGNNEDNNTETFRPGGGDMRDNWRSELYKYKVVRIEPIGIAPTEAKRRVVQRE
		     KRAVGIGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQ
		     LTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTAVPWNNSWSDKNLSTIWET
		     MTWMQWEKEIDNYTDIIYSLIEESQNQQEKNEEDLLKLDSWASLWNWFSISKWLWYIK
		     IFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTHHPAPRGPDRPEGIEEESGDRD
		     RDRSIPLAGGFLEIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWELLKYWWNL
		     LQYWSQELKNSAISLLNVTAIAVAEGTDRIIEVAQRAFRAILHIPRRIRQGLERALL"
BASE COUNT	942 a	 475 c	  637 g    632 t
ORIGIN
       1 atgagagtga aggggatcag gaagaattat cagcactggt ggaaaggggg catcttgctc 
      61 cttgggatgt taatgatctg tagggctgaa aaagacaagt gggtcacagt ttattatgga 
     121 gtacctgtgt ggaaagaagc aaacaccact ctattctgtg cctcagatgc taaagcatat 
     181 tcaatagagg cacataatgt ttgggccaca catgcctgtg tacccacaga ccccaaccca 
     241 caagaaatag tattgggaaa tgtgacagaa acttttaatg tgtggaaaaa taacatggta 
     301 gatcagatgc atggggatat aatcagttta tgggatcaaa gcctaaagcc atgtgtaaaa 
     361 ttaaccccac tctgtgttac tttaaattgc accaatgtga agagtaatgg tacttccccc 
     421 cctactacta gtagtagctg gaaaacagtg aaggaaggag aaataaaaaa ctgctctttc 
     481 aatattacca cagacatgaa agaaaaggta gagaaaaaac atgcaatttt ttatgacctt 
     541 gatgtaatgc cactagataa ttccagcaac agctataggt tgataagttg taacacctca 
     601 cgcattacac aggcctgtcc aaagatatcc tttgaaccaa ttcccataca ttattgtgcc 
     661 ccggctggtt ttgcgattct aaaatgtaat gataagaagt tcaataaaac aggacattgt 
     721 caaaatgtca gcacagtaca atgtacacat ggaattaagc cagtagtatc aactcaactg 
     781 ctgttaaatg gcagtctagt agaacaagat gtagaaatta gatctgaaaa tttcacgaac 
     841 aatgctaaaa ccataatagt acagctgaaa gatcctgtag aaattagttg tgcaagaccc 
     901 aacaacaata caagggacag tatacatatg ggaccaggaa aagcatttta tacaacagga 
     961 gacataatag gagatataag acaagcacat tgcaacatta gtgaagcaaa atggaataaa 
    1021 actttagaac aggtggttgg taaattaaga gaacaatttg ggaataaaat aataaagttt 
    1081 aatcaatcct caggagggga cccagaaatt acaatgcaca gttttaattg tagaggggaa 
    1141 tttttctact gtaatacaac aaaactgttt aatagtgttt ggaatgctac tgcaagaaat 
    1201 agcactcaga atattactga aggaaatgag acaatcatac tcccgtgcag aataaaacaa 
    1261 attataaaca tgtggcagca agtaggaaaa gcaatgtatg cccctcccat tagtggacta 
    1321 cttaattgta catcaaatat tacaggacta ctaataacaa gagatggtgg taataatgag 
    1381 gacaacaaca cagagacctt cagacctgga ggaggagata tgagggacaa ttggagaagt 
    1441 gaattatata aatataaagt agtaagaatt gaaccaatag gcatagcacc caccgaggca 
    1501 aagagaagag tggtgcagag agaaaaaaga gcagtgggaa taggagcttt gttccttggg 
    1561 ttcttgggag cagcaggaag cactatgggc gcagcgtcaa taacgctgac ggtacaggcc 
    1621 agacaattat tgtctggtat agtgcaacag cagaacaacc tgctgagggc tattgaggcg 
    1681 caacagcata tgttgcaact cacagtctgg ggcatcaagc agctccaggc aagagtccta 
    1741 gctgtagaaa gatacctaag ggatcaacag ctcctgggga tttggggttg ctctggaaaa 
    1801 ctcatctgca ccactgctgt gccttggaat aacagttgga gtgataaaaa tctgagtacc 
    1861 atttgggaaa ccatgacctg gatgcagtgg gaaaaagaaa ttgacaatta cacagacata 
    1921 atatacagct taattgaaga atcgcagaac cagcaagaaa agaatgaaga ggacttatta 
    1981 aaattggatt catgggcaag tttgtggaat tggtttagca tatcaaaatg gctgtggtat 
    2041 ataaaaatat tcataatgat agtaggaggc ttgataggtt taagaatagt ttttactgta 
    2101 ctttctatag taaatagagt taggcaggga tactcaccct tatcgtttca gacccaccac 
    2161 ccagccccga ggggacccga caggcccgaa ggaatcgaag aagaaagtgg agacagagac 
    2221 agagacagat ccattccatt agcgggtgga ttcttagaaa tcatctgggt cgacctgcgg 
    2281 agcctgtgcc tcttcagcta ccaccgcttg agagacttac tcttgattgt aacgaggatt 
    2341 gtggaacttc tgggacgcag ggggtgggaa ctcctcaaat attggtggaa cctcctccag 
    2401 tattggagtc aggaactaaa gaatagtgct attagcttgc tcaacgtcac agccatagca 
    2461 gtagctgagg gaacagatag aattatagaa gtagcacaaa gagcctttag agctatcctc 
    2521 cacataccta gaagaataag acagggcttg gaaagggctt tgctataaga tgggtggcaa 
    2581 gtggtcaaaa cgtagtgtgc ctggatggtc tactataagg gaaagaatga aacgagctga 
    2641 accagcagca gttggggtgg gagcagtatc tcgagacgga tccagc
//
last modified: Tue May 31 10:56 2022


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