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LOCUS JN665039 1166 bp DNA linear VRL 01-FEB-2012
DEFINITION HIV-1 isolate 1009519 from South Africa pol protein (pol) gene,
partial cds
ACCESSION JN665039
VERSION JN665039.1 GI:374095079
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1166)
Show all sequences for reference 1
AUTHORS Manasa,J., Katzenstein,D., Cassol,S., Newell,M.L. and de,O.
TITLE Primary Drug Resistance in South Africa: Data from 10 Years of
Surveys.
JOURNAL AIDS Res Hum Retroviruses. 2012 Mar 12.
PUBMED 22251009
REFERENCE 2 (bases 1 to 1166)
Show all sequences for reference 2
AUTHORS Manasa,J., Katzenstein,D., Cassol,S., Newell,M.-L. and de
Oliveira,T.
TITLE Direct Submission
JOURNAL Submitted (10-SEP-2011) Africa Centre For Health and Population
Studies, University of KwaZulu Natal, 719 Umbilo Road, Durban,
KwaZulu Natal 4013, South Africa
REFERENCE 3
Show all sequences for reference 3
AUTHORS Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
TITLE Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
Analysis.
JOURNAL EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
PUBMED 31143879
FEATURES Location/Qualifiers
source 1..1166
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="1009519"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="02-Jun-2010"
/note="subtype: C"
gene <1..>1166
/gene="pol"
CDS <1..>1166
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEY84846.1"
/db_xref="GI:374095080"
/translation="PQITLWQRPLISIKVGGQIKEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQIPIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMTKILEPFRTQNPE
IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALT"
BASE COUNT 457 a 188 c 250 g 271 t
ORIGIN
1 cctcaaatca ctctttggca gcgaccctta atctcaataa aagtaggggg tcagataaag
61 gaggctctat tagacacagg agcagatgat acagtattag aagaaataaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtgag acagtatgat
181 caaataccta tagaaatttg tggaaaaaag gctataggta cagtgttagt aggacctaca
241 cctgtcaaca taattggaag aaatatgttg actcagcttg gatgcacact aaattttcca
301 attagcccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacagtggc cattgacaga agaaaaaata aaagcattaa cagcaatttg tgaagaaatg
421 gagaaggaag gaaaaattac aaaaattggg cctgaaaatc catataatac tccaatattt
481 gccataaaaa agaaggacag tactaagtgg aggaaattag tggatttcag ggaactcaat
541 aaaagaactc aagatttttg ggaggttcaa ttaggaatac cacacccagc aggattaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggggatgcat atttttcagt tcctttagat
661 gaaagcttta ggaagtatac tgcattcacc atacctagta taaacaatga gacaccaggg
721 attagatatc aatataatgt gctcccacag ggatggaaag gatcaccatc aatattccag
781 agtagcatga caaaaatttt agagcccttt aggacacaaa atccagaaat agtcatctat
841 caatatatgg atgacttgta tgtaggatct gatttagaaa tagggcaaca tagagcaaaa
901 atagaggagt taagagaaca tctcttaagg tggggattca ctacaccaga taagaaacat
961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta
1021 cagcctataa agctgccaga aaaggacagc tggactgtca atgatataca aaagttagtg
1081 ggaaaattaa actgggcaag tcagatttac gcagggatca aagtaaggca actttgtaaa
1141 ctccttagag ggaccaaagc actaac
//
last modified: Tue May 31 10:56 2022