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LOCUS	    JN665039		    1166 bp    DNA     linear	VRL 01-FEB-2012
DEFINITION  HIV-1 isolate 1009519 from South Africa pol protein (pol) gene,
	    partial cds
ACCESSION   JN665039
VERSION     JN665039.1 GI:374095079
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1166)
            Show all sequences for reference 1
  AUTHORS   Manasa,J., Katzenstein,D., Cassol,S., Newell,M.L. and de,O.
  TITLE     Primary Drug Resistance in South Africa: Data from 10 Years of
	    Surveys.
  JOURNAL   AIDS Res Hum Retroviruses. 2012 Mar 12.
  PUBMED    22251009
REFERENCE   2 (bases 1 to 1166)
            Show all sequences for reference 2
  AUTHORS   Manasa,J., Katzenstein,D., Cassol,S., Newell,M.-L. and de
	    Oliveira,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-SEP-2011) Africa Centre For Health and Population
	    Studies, University of KwaZulu Natal, 719 Umbilo Road, Durban,
	    KwaZulu Natal 4013, South Africa
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
	    Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
	    Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
	    Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
	    Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
	    Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
	    Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
  TITLE     Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
	    Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
	    Analysis.
  JOURNAL   EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
	    10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
  PUBMED    31143879
FEATURES             Location/Qualifiers
     source	     1..1166
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="1009519"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="02-Jun-2010"
		     /note="subtype: C"
     gene	     <1..>1166
		     /gene="pol"
     CDS	     <1..>1166
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEY84846.1"
		     /db_xref="GI:374095080"
		     /translation="PQITLWQRPLISIKVGGQIKEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQIPIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMTKILEPFRTQNPE
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALT"
BASE COUNT	457 a	 188 c	  250 g    271 t
ORIGIN
       1 cctcaaatca ctctttggca gcgaccctta atctcaataa aagtaggggg tcagataaag 
      61 gaggctctat tagacacagg agcagatgat acagtattag aagaaataaa tttgccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtgag acagtatgat 
     181 caaataccta tagaaatttg tggaaaaaag gctataggta cagtgttagt aggacctaca 
     241 cctgtcaaca taattggaag aaatatgttg actcagcttg gatgcacact aaattttcca 
     301 attagcccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacagtggc cattgacaga agaaaaaata aaagcattaa cagcaatttg tgaagaaatg 
     421 gagaaggaag gaaaaattac aaaaattggg cctgaaaatc catataatac tccaatattt 
     481 gccataaaaa agaaggacag tactaagtgg aggaaattag tggatttcag ggaactcaat 
     541 aaaagaactc aagatttttg ggaggttcaa ttaggaatac cacacccagc aggattaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggggatgcat atttttcagt tcctttagat 
     661 gaaagcttta ggaagtatac tgcattcacc atacctagta taaacaatga gacaccaggg 
     721 attagatatc aatataatgt gctcccacag ggatggaaag gatcaccatc aatattccag 
     781 agtagcatga caaaaatttt agagcccttt aggacacaaa atccagaaat agtcatctat 
     841 caatatatgg atgacttgta tgtaggatct gatttagaaa tagggcaaca tagagcaaaa 
     901 atagaggagt taagagaaca tctcttaagg tggggattca ctacaccaga taagaaacat 
     961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta 
    1021 cagcctataa agctgccaga aaaggacagc tggactgtca atgatataca aaagttagtg 
    1081 ggaaaattaa actgggcaag tcagatttac gcagggatca aagtaaggca actttgtaaa 
    1141 ctccttagag ggaccaaagc actaac
//
last modified: Tue May 31 10:56 2022


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