HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    JN664995		    1196 bp    DNA     linear	VRL 01-FEB-2012
DEFINITION  HIV-1 isolate 1002842 from South Africa pol protein (pol) gene,
	    partial cds
ACCESSION   JN664995
VERSION     JN664995.1 GI:374094991
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1196)
            Show all sequences for reference 1
  AUTHORS   Manasa,J., Katzenstein,D., Cassol,S., Newell,M.L. and de,O.
  TITLE     Primary Drug Resistance in South Africa: Data from 10 Years of
	    Surveys.
  JOURNAL   AIDS Res Hum Retroviruses. 2012 Mar 12.
  PUBMED    22251009
REFERENCE   2 (bases 1 to 1196)
            Show all sequences for reference 2
  AUTHORS   Manasa,J., Katzenstein,D., Cassol,S., Newell,M.-L. and de
	    Oliveira,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-SEP-2011) Africa Centre For Health and Population
	    Studies, University of KwaZulu Natal, 719 Umbilo Road, Durban,
	    KwaZulu Natal 4013, South Africa
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
	    Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
	    Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
	    Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
	    Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
	    Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
	    Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
  TITLE     Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
	    Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
	    Analysis.
  JOURNAL   EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
	    10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
  PUBMED    31143879
FEATURES             Location/Qualifiers
     source	     1..1196
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="1002842"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="03-May-2010"
		     /note="subtype: C"
     gene	     <1..>1196
		     /gene="pol"
     CDS	     <1..>1196
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEY84802.1"
		     /db_xref="GI:374094992"
		     /translation="PQITLWQRPLVTIRVGGQIKEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     SIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDEGFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAQNPE
		     MVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIKLPEKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTDIV
		     PLTEEA"
BASE COUNT	463 a	 198 c	  264 g    271 t
ORIGIN
       1 cctcaaatca ctctttggca gcgacccctt gtcacaataa gagtaggggg ccaaataaag 
      61 gaggctctat tagacacagg agcagatgat acagtattag aagaaataaa tttgccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caaatactta tagaaatttg tggaaaaaag gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatatgttg actcagcttg gatgtacact aaattttcca 
     301 attagctcca ttgaaactgt accagtaaaa ttaaagccag gaatggacgg cccaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagcaatttg tgaagagatg 
     421 gaaaaagaag gaaaaattac aaaaattggg cctgaaaatc cctataacac tcccatattt 
     481 gccataaaaa agaaggacag tactaagtgg aggaaattag tggatttcag ggaactcaat 
     541 aaaagaactc aagacttttg ggaggttcaa ttaggaatac cacacccagc agggttaaaa 
     601 aagaaaaaat cagtgacagt attggatgtg ggggatgcat atttttcagt tcctttagat 
     661 gaaggcttca ggaagtatac tgcattcacc atacctagta taaacaatga aacaccaggg 
     721 attagatatc aatataatgt acttccacag ggatggaaag ggtcaccagc aatattccag 
     781 agtagcatga caaaaatctt agagcccttt agggcacaga atccagaaat ggtcatctat 
     841 cagtatatgg atgacttata tgtaggatct gacttagaaa tagggcaaca tagagcaaaa 
     901 atagaggagt taagagaaca tctattgaag tggggattca ccacaccaga taagaaacat 
     961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagtg 
    1021 cagcctataa agctgccaga aaaggagagc tggactgtca atgatataca gaagttagtg 
    1081 ggaaaattaa actgggcaag tcagatttac ccagggatta aggtaaagca gctttgtaaa 
    1141 ctccttaggg ggaccaaagc actaacagac atagtaccac taactgaaga agcaga
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health