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LOCUS JN664995 1196 bp DNA linear VRL 01-FEB-2012
DEFINITION HIV-1 isolate 1002842 from South Africa pol protein (pol) gene,
partial cds
ACCESSION JN664995
VERSION JN664995.1 GI:374094991
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1196)
Show all sequences for reference 1
AUTHORS Manasa,J., Katzenstein,D., Cassol,S., Newell,M.L. and de,O.
TITLE Primary Drug Resistance in South Africa: Data from 10 Years of
Surveys.
JOURNAL AIDS Res Hum Retroviruses. 2012 Mar 12.
PUBMED 22251009
REFERENCE 2 (bases 1 to 1196)
Show all sequences for reference 2
AUTHORS Manasa,J., Katzenstein,D., Cassol,S., Newell,M.-L. and de
Oliveira,T.
TITLE Direct Submission
JOURNAL Submitted (10-SEP-2011) Africa Centre For Health and Population
Studies, University of KwaZulu Natal, 719 Umbilo Road, Durban,
KwaZulu Natal 4013, South Africa
REFERENCE 3
Show all sequences for reference 3
AUTHORS Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
TITLE Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
Analysis.
JOURNAL EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
PUBMED 31143879
FEATURES Location/Qualifiers
source 1..1196
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="1002842"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="03-May-2010"
/note="subtype: C"
gene <1..>1196
/gene="pol"
CDS <1..>1196
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEY84802.1"
/db_xref="GI:374094992"
/translation="PQITLWQRPLVTIRVGGQIKEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
SIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDEGFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAQNPE
MVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIKLPEKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTDIV
PLTEEA"
BASE COUNT 463 a 198 c 264 g 271 t
ORIGIN
1 cctcaaatca ctctttggca gcgacccctt gtcacaataa gagtaggggg ccaaataaag
61 gaggctctat tagacacagg agcagatgat acagtattag aagaaataaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 caaatactta tagaaatttg tggaaaaaag gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatatgttg actcagcttg gatgtacact aaattttcca
301 attagctcca ttgaaactgt accagtaaaa ttaaagccag gaatggacgg cccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagcaatttg tgaagagatg
421 gaaaaagaag gaaaaattac aaaaattggg cctgaaaatc cctataacac tcccatattt
481 gccataaaaa agaaggacag tactaagtgg aggaaattag tggatttcag ggaactcaat
541 aaaagaactc aagacttttg ggaggttcaa ttaggaatac cacacccagc agggttaaaa
601 aagaaaaaat cagtgacagt attggatgtg ggggatgcat atttttcagt tcctttagat
661 gaaggcttca ggaagtatac tgcattcacc atacctagta taaacaatga aacaccaggg
721 attagatatc aatataatgt acttccacag ggatggaaag ggtcaccagc aatattccag
781 agtagcatga caaaaatctt agagcccttt agggcacaga atccagaaat ggtcatctat
841 cagtatatgg atgacttata tgtaggatct gacttagaaa tagggcaaca tagagcaaaa
901 atagaggagt taagagaaca tctattgaag tggggattca ccacaccaga taagaaacat
961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagtg
1021 cagcctataa agctgccaga aaaggagagc tggactgtca atgatataca gaagttagtg
1081 ggaaaattaa actgggcaag tcagatttac ccagggatta aggtaaagca gctttgtaaa
1141 ctccttaggg ggaccaaagc actaacagac atagtaccac taactgaaga agcaga
//
last modified: Tue May 31 10:56 2022