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LOCUS	    JN638124		    1179 bp    DNA     linear	VRL 26-SEP-2011
DEFINITION  HIV-1 isolate A205 from South Africa pol protein (pol) and gag
	    protein (gag) genes, partial cds
ACCESSION   JN638124
VERSION     JN638124.1 GI:346420595
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1179)
            Show all sequences for reference 1
  AUTHORS   van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
  TITLE     Antiretroviral resistance patterns and factors associated with
	    resistance in adult patients failing NNRTI-based regimens in the
	    western cape, South Africa
  JOURNAL   J. Med. Virol. 83 (10), 1764-1769 (2011)
  PUBMED    21837793
REFERENCE   2 (bases 1 to 1179)
            Show all sequences for reference 2
  AUTHORS   van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2011) Division of Medical Virology, Stellenbosch
	    University, Francie van Zijl Drive, Parow 7500, South Africa
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Sequence name A205 Patient sex Female
	    Patient age 58 Patient comment d4T 3TC NVP CD4 count 165 Viral Load
	    2200 ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..1179
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="A205"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="23-Sep-2008"
     gene	     <1..>1179
		     /gene="pol"
     CDS	     <1..>1179
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEO24086.1"
		     /db_xref="GI:346420597"
		     /translation="EQTRANSPTSRELRGGSPCPKAGDEGQGTLNFPQITLWQRPLVT
		     IKVGGQTKEALLDTGADDTVLEEINLPGKWKPKMIGGIGGFIKVRQYEQIPIEICGKK
		     AIGAVLVGPTPVNIIGRNMLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEE
		     KIKALTEICEEMEKEGKISKIGPDNPYNTPVFAIKKKDSTKWRKLVDFRELNKKTQDF
		     WEVQLGIPHPAGLEKKKSVTVLDVGDAYFSVPLDEGFRKYTAFTIPSINNETPGIRYQ
		     YNVLPQGWKGSPAIFQASMTKILEPFRAQNPEIVIYQYVDDLYVASDLEIGQHRAKIE
		     ELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLV
		     G"
     gene	     <1..136
		     /gene="gag"
     CDS	     <1..136
		     /gene="gag"
		     /codon_start="2"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="AEO24085.1"
		     /db_xref="GI:346420596"
		     /translation="SRPEPTAPPAESFEEAAPVPKQETRDREPLISLKSLFGSDPLSQ
		     "
BASE COUNT	450 a	 213 c	  262 g    253 t      1 other
ORIGIN
       1 gagcagacca gagccaacag ccccaccagc agagagcttc gaggaggcag cccctgtccc 
      61 aaagcaggag acgagggaca gggaaccctt aatttccctc aaatcactct ttggcagcga 
     121 ccccttgtca caataaaagt agggggccag acaaaggagg ccctcytaga cacaggagca 
     181 gatgatacag tattagaaga aataaatttg ccaggaaaat ggaaaccaaa aatgataggg 
     241 ggaattggag gttttatcaa agtaagacaa tatgaacaaa tacctataga aatttgtgga 
     301 aaaaaggcta taggtgcagt attagtaggg cctacacctg tcaacataat tggaaggaac 
     361 atgttgactc agcttggatg cacactaaat tttccaatca gtcctattga aactgtacca 
     421 gtaaaattga agccaggaat ggatggccca aaggttaaac aatggccatt gactgaagag 
     481 aaaataaaag cattaacaga aatttgtgaa gaaatggaga aagaaggaaa aatttcaaaa 
     541 attgggcctg acaatccata taacactcca gtatttgcca taaaaaagaa ggacagtaca 
     601 aaatggagaa aattagtaga tttcagggaa ctcaataaga aaactcaaga cttttgggag 
     661 gttcagttag gaataccaca cccagcaggg ttagaaaaga aaaaatcagt gacagtacta 
     721 gatgtggggg atgcatattt ttcagttcct ttagatgaag gcttcaggaa gtatactgca 
     781 ttcaccatac ctagtataaa caatgaaaca ccagggatta gatatcaata taatgtgctt 
     841 ccacaaggat ggaaagggtc accagcaata ttccaggcta gcatgacaaa aatcttagag 
     901 ccctttagag cacaaaatcc agaaatagtc atctatcaat atgtggatga cttgtatgta 
     961 gcatctgact tagaaatagg gcaacataga gcaaaaatag aagagttaag agaacatctg 
    1021 ttaaagtggg gatttaccac accagacaag aaacatcaga aagaaccccc atttctttgg 
    1081 atggggtatg aactccatcc tgacaaatgg acagtacagc ctatacaatt gccagaaaag 
    1141 gatagctgga ctgtcaatga catacagaag ttagtagga
//
last modified: Tue May 31 10:56 2022


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