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LOCUS JN638124 1179 bp DNA linear VRL 26-SEP-2011
DEFINITION HIV-1 isolate A205 from South Africa pol protein (pol) and gag
protein (gag) genes, partial cds
ACCESSION JN638124
VERSION JN638124.1 GI:346420595
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1179)
Show all sequences for reference 1
AUTHORS van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
TITLE Antiretroviral resistance patterns and factors associated with
resistance in adult patients failing NNRTI-based regimens in the
western cape, South Africa
JOURNAL J. Med. Virol. 83 (10), 1764-1769 (2011)
PUBMED 21837793
REFERENCE 2 (bases 1 to 1179)
Show all sequences for reference 2
AUTHORS van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
TITLE Direct Submission
JOURNAL Submitted (29-AUG-2011) Division of Medical Virology, Stellenbosch
University, Francie van Zijl Drive, Parow 7500, South Africa
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Sequence name A205 Patient sex Female
Patient age 58 Patient comment d4T 3TC NVP CD4 count 165 Viral Load
2200 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..1179
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="A205"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="23-Sep-2008"
gene <1..>1179
/gene="pol"
CDS <1..>1179
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEO24086.1"
/db_xref="GI:346420597"
/translation="EQTRANSPTSRELRGGSPCPKAGDEGQGTLNFPQITLWQRPLVT
IKVGGQTKEALLDTGADDTVLEEINLPGKWKPKMIGGIGGFIKVRQYEQIPIEICGKK
AIGAVLVGPTPVNIIGRNMLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEE
KIKALTEICEEMEKEGKISKIGPDNPYNTPVFAIKKKDSTKWRKLVDFRELNKKTQDF
WEVQLGIPHPAGLEKKKSVTVLDVGDAYFSVPLDEGFRKYTAFTIPSINNETPGIRYQ
YNVLPQGWKGSPAIFQASMTKILEPFRAQNPEIVIYQYVDDLYVASDLEIGQHRAKIE
ELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLV
G"
gene <1..136
/gene="gag"
CDS <1..136
/gene="gag"
/codon_start="2"
/transl_table="1"
/product="gag protein"
/protein_id="AEO24085.1"
/db_xref="GI:346420596"
/translation="SRPEPTAPPAESFEEAAPVPKQETRDREPLISLKSLFGSDPLSQ
"
BASE COUNT 450 a 213 c 262 g 253 t 1 other
ORIGIN
1 gagcagacca gagccaacag ccccaccagc agagagcttc gaggaggcag cccctgtccc
61 aaagcaggag acgagggaca gggaaccctt aatttccctc aaatcactct ttggcagcga
121 ccccttgtca caataaaagt agggggccag acaaaggagg ccctcytaga cacaggagca
181 gatgatacag tattagaaga aataaatttg ccaggaaaat ggaaaccaaa aatgataggg
241 ggaattggag gttttatcaa agtaagacaa tatgaacaaa tacctataga aatttgtgga
301 aaaaaggcta taggtgcagt attagtaggg cctacacctg tcaacataat tggaaggaac
361 atgttgactc agcttggatg cacactaaat tttccaatca gtcctattga aactgtacca
421 gtaaaattga agccaggaat ggatggccca aaggttaaac aatggccatt gactgaagag
481 aaaataaaag cattaacaga aatttgtgaa gaaatggaga aagaaggaaa aatttcaaaa
541 attgggcctg acaatccata taacactcca gtatttgcca taaaaaagaa ggacagtaca
601 aaatggagaa aattagtaga tttcagggaa ctcaataaga aaactcaaga cttttgggag
661 gttcagttag gaataccaca cccagcaggg ttagaaaaga aaaaatcagt gacagtacta
721 gatgtggggg atgcatattt ttcagttcct ttagatgaag gcttcaggaa gtatactgca
781 ttcaccatac ctagtataaa caatgaaaca ccagggatta gatatcaata taatgtgctt
841 ccacaaggat ggaaagggtc accagcaata ttccaggcta gcatgacaaa aatcttagag
901 ccctttagag cacaaaatcc agaaatagtc atctatcaat atgtggatga cttgtatgta
961 gcatctgact tagaaatagg gcaacataga gcaaaaatag aagagttaag agaacatctg
1021 ttaaagtggg gatttaccac accagacaag aaacatcaga aagaaccccc atttctttgg
1081 atggggtatg aactccatcc tgacaaatgg acagtacagc ctatacaatt gccagaaaag
1141 gatagctgga ctgtcaatga catacagaag ttagtagga
//
last modified: Tue May 31 10:56 2022