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LOCUS JN638120 1126 bp DNA linear VRL 26-SEP-2011
DEFINITION HIV-1 isolate A200 from South Africa pol protein (pol) gene,
partial cds; and nonfunctional gag protein (gag) gene, partial
sequence
ACCESSION JN638120
VERSION JN638120.1 GI:346420584
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1126)
Show all sequences for reference 1
AUTHORS van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
TITLE Antiretroviral resistance patterns and factors associated with
resistance in adult patients failing NNRTI-based regimens in the
western cape, South Africa
JOURNAL J. Med. Virol. 83 (10), 1764-1769 (2011)
PUBMED 21837793
REFERENCE 2 (bases 1 to 1126)
Show all sequences for reference 2
AUTHORS van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
TITLE Direct Submission
JOURNAL Submitted (29-AUG-2011) Division of Medical Virology, Stellenbosch
University, Francie van Zijl Drive, Parow 7500, South Africa
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Sequence name A200 Patient sex Male
Patient age 33 Patient comment d4T 3TC EFV CD4 count 147 Viral Load
2100 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..1126
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="A200"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="02-Sep-2008"
gene <1..>1126
/gene="pol"
CDS <1..>1126
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEO24078.1"
/db_xref="GI:346420585"
/translation="DNPRAEAGAERQGTLNFPQITLWQRPLVTIKVGGQIKEALLDTG
ADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQISMEICGKKAIGTVLIGPTPVNII
GRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIIALTEICKEMEKE
GKITKIGPENPYNTPIFAIKRKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
NKSMTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
QSSMTKILQPFRAQNPDIVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPD
KKHQKEPPFLWMGYELHPDKWTVQPIQLPEKNSWTVNDIQK"
gene <1..91
/gene="gag"
misc_feature <1..91
/gene="gag"
/note="nonfunctional gag protein due to mutation"
BASE COUNT 442 a 192 c 237 g 254 t 1 other
ORIGIN
1 gacaaccccc gtgccgaagc aggagcagaa agacagggaa cccttaattt ccctcaaatc
61 actctttggc agcgacccct tgtcacaata aaagtagggg gccaaataaa ggaggctctc
121 ttagatacag gagcagatga tacagtatta gaagaaatga gtctgccagg aaaatggaaa
181 ccaaaaatga taggaggaat tggaggtttt atcaaagtaa gacagtatga tcaaatatct
241 atggaaattt gtgggaaaaa agctataggt acagtattaa tagggcctac acctgtcaac
301 ataattggaa ggaatctgtt gacycagctc ggatgcacac taaattttcc aattagtccc
361 attgaaactg taccagtaaa attaaagcca ggaatggatg gcccaaaggt caaacaatgg
421 ccattgacag aagagaaaat aatagcatta acagaaattt gtaaagaaat ggaaaaggaa
481 ggaaaaatta caaaaatagg gcctgaaaat ccatataata ctccaatatt tgctataaaa
541 aggaaggaca gtactaagtg gagaaaatta gtagatttca gggaactcaa taaaagaact
601 caagactttt gggaggttca attaggaata ccacacccag cagggttaaa aaagaacaaa
661 tcaatgacag tactggatgt gggggatgca tacttttcag ttcctttaga tgaagatttc
721 aggaaatata ctgcattcac catacctagt ataaacaatg aaacaccagg aattagatat
781 caatataatg tgttgccaca gggatggaaa ggatcaccag caatatttca gagtagcatg
841 acaaaaatcc tacagccatt tagagcacaa aatccagaca tagtcattta tcaatatatg
901 gatgacttgt atgttggatc tgacttagaa atagggcaac atagagcaaa aatagaagag
961 ttaagagaac atctattaaa gtggggattt accacaccag acaagaaaca tcagaaagaa
1021 cctccatttc tttggatggg gtatgaactc catcctgaca aatggacagt acagcctata
1081 cagctgccag aaaagaatag ctggactgtc aatgacatac agaagt
//
last modified: Tue May 31 10:56 2022