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LOCUS	    JN638120		    1126 bp    DNA     linear	VRL 26-SEP-2011
DEFINITION  HIV-1 isolate A200 from South Africa pol protein (pol) gene,
	    partial cds; and nonfunctional gag protein (gag) gene, partial
	    sequence
ACCESSION   JN638120
VERSION     JN638120.1 GI:346420584
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1126)
            Show all sequences for reference 1
  AUTHORS   van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
  TITLE     Antiretroviral resistance patterns and factors associated with
	    resistance in adult patients failing NNRTI-based regimens in the
	    western cape, South Africa
  JOURNAL   J. Med. Virol. 83 (10), 1764-1769 (2011)
  PUBMED    21837793
REFERENCE   2 (bases 1 to 1126)
            Show all sequences for reference 2
  AUTHORS   van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2011) Division of Medical Virology, Stellenbosch
	    University, Francie van Zijl Drive, Parow 7500, South Africa
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Sequence name A200 Patient sex Male
	    Patient age 33 Patient comment d4T 3TC EFV CD4 count 147 Viral Load
	    2100 ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..1126
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="A200"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="02-Sep-2008"
     gene	     <1..>1126
		     /gene="pol"
     CDS	     <1..>1126
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEO24078.1"
		     /db_xref="GI:346420585"
		     /translation="DNPRAEAGAERQGTLNFPQITLWQRPLVTIKVGGQIKEALLDTG
		     ADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQISMEICGKKAIGTVLIGPTPVNII
		     GRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIIALTEICKEMEKE
		     GKITKIGPENPYNTPIFAIKRKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
		     NKSMTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
		     QSSMTKILQPFRAQNPDIVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPD
		     KKHQKEPPFLWMGYELHPDKWTVQPIQLPEKNSWTVNDIQK"
     gene	     <1..91
		     /gene="gag"
     misc_feature    <1..91
		     /gene="gag"
		     /note="nonfunctional gag protein due to mutation"
BASE COUNT	442 a	 192 c	  237 g    254 t      1 other
ORIGIN
       1 gacaaccccc gtgccgaagc aggagcagaa agacagggaa cccttaattt ccctcaaatc 
      61 actctttggc agcgacccct tgtcacaata aaagtagggg gccaaataaa ggaggctctc 
     121 ttagatacag gagcagatga tacagtatta gaagaaatga gtctgccagg aaaatggaaa 
     181 ccaaaaatga taggaggaat tggaggtttt atcaaagtaa gacagtatga tcaaatatct 
     241 atggaaattt gtgggaaaaa agctataggt acagtattaa tagggcctac acctgtcaac 
     301 ataattggaa ggaatctgtt gacycagctc ggatgcacac taaattttcc aattagtccc 
     361 attgaaactg taccagtaaa attaaagcca ggaatggatg gcccaaaggt caaacaatgg 
     421 ccattgacag aagagaaaat aatagcatta acagaaattt gtaaagaaat ggaaaaggaa 
     481 ggaaaaatta caaaaatagg gcctgaaaat ccatataata ctccaatatt tgctataaaa 
     541 aggaaggaca gtactaagtg gagaaaatta gtagatttca gggaactcaa taaaagaact 
     601 caagactttt gggaggttca attaggaata ccacacccag cagggttaaa aaagaacaaa 
     661 tcaatgacag tactggatgt gggggatgca tacttttcag ttcctttaga tgaagatttc 
     721 aggaaatata ctgcattcac catacctagt ataaacaatg aaacaccagg aattagatat 
     781 caatataatg tgttgccaca gggatggaaa ggatcaccag caatatttca gagtagcatg 
     841 acaaaaatcc tacagccatt tagagcacaa aatccagaca tagtcattta tcaatatatg 
     901 gatgacttgt atgttggatc tgacttagaa atagggcaac atagagcaaa aatagaagag 
     961 ttaagagaac atctattaaa gtggggattt accacaccag acaagaaaca tcagaaagaa 
    1021 cctccatttc tttggatggg gtatgaactc catcctgaca aatggacagt acagcctata 
    1081 cagctgccag aaaagaatag ctggactgtc aatgacatac agaagt
//
last modified: Tue May 31 10:56 2022


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