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LOCUS	    JN638105		    1148 bp    DNA     linear	VRL 26-SEP-2011
DEFINITION  HIV-1 isolate A178 from South Africa pol protein (pol) and gag
	    protein (gag) genes, partial cds
ACCESSION   JN638105
VERSION     JN638105.1 GI:346420542
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1148)
            Show all sequences for reference 1
  AUTHORS   van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
  TITLE     Antiretroviral resistance patterns and factors associated with
	    resistance in adult patients failing NNRTI-based regimens in the
	    western cape, South Africa
  JOURNAL   J. Med. Virol. 83 (10), 1764-1769 (2011)
  PUBMED    21837793
REFERENCE   2 (bases 1 to 1148)
            Show all sequences for reference 2
  AUTHORS   van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2011) Division of Medical Virology, Stellenbosch
	    University, Francie van Zijl Drive, Parow 7500, South Africa
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Sequence name A178 Patient sex Female
	    Patient age 18 Patient comment d4T 3TC NVP CD4 count 716 Viral Load
	    880 ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..1148
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="A178"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="16-Jan-2009"
     gene	     <1..>1148
		     /gene="pol"
     CDS	     <1..>1148
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEO24052.1"
		     /db_xref="GI:346420544"
		     /translation="TSRGLQARGDNPRSEAGAEGQGTXNFPQITLWQRPLVSIKVGGQ
		     TREALLDTGADDTVLEEINLPGKWKPRMIGGIGGFIKVRQYDQITIEIAGKKAIGTVL
		     IGPTPINIIGRNMLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIXALT
		     AICEEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEIQLG
		     IPHPAGLKKKKSVTVLDVGDAYFSVPLDEGFRKYTAFTIPSINNETPGIRYCYNVLPQ
		     GWKGSPAIXQASMTKILEPFRTQNPEIVIYQYVDDLXVGSDLEIGQHRXKIEELREHL
		     LXWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPXQLPEKDSWTVNDI"
     gene	     <1..118
		     /gene="gag"
     CDS	     <1..118
		     /gene="gag"
		     /codon_start="2"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="AEO24051.1"
		     /db_xref="GI:346420543"
		     /translation="PAEDFRPEETTPAPKQEPRDXEPLISLKSLFGSDPLSQ"
BASE COUNT	437 a	 209 c	  246 g    240 t     16 other
ORIGIN
       1 accagcagag gacttcaggc ccgaggagac aacccccgct ccgaagcagg agccgaggga 
      61 carggaaccy ttaatttccc tcaaatcact ctttggcagc gaccccttgt ctcaataaaa 
     121 gtagggggcc agacaaggga ggctctctta gacacaggag cagatgatac agtattagaa 
     181 gaaataaatt tgccaggaaa atggaaacca agaatgatag gaggaattgg aggttttatt 
     241 aaagtaagac aatatgatca aataactata gaaatygcag graaaaaggc tataggtaca 
     301 gtattaatag gacctacacc tatcaacata attggragra atatgttgac tcagcttgga 
     361 tgcacactaa attttccaat yagtcctatt gaaactgtac cagtaaaatt aaagccagga 
     421 atggatggcc caaaagttaa rcaatggcca ttgacagaag aaaaaataar agcattaaca 
     481 gcaatttgtg aagaaatgga gaaggaagga aaaattacaa aaattgggcc tgaaaatcca 
     541 tataacactc cagtatttgc cataaaaaag aaggacagca ctaaatggag aaaactagta 
     601 gatttcaggg aactcaataa aagaactcaa gacttttggg aaattcagtt aggaatacca 
     661 cacccagcag ggttaaagaa gaaaaaatca gtaacagtgc tggatgtggg rgatgcatat 
     721 ttttcagttc ctttagatga aggtttcagg aagtayactg cattcaccat acctagcata 
     781 aacaatgaaa caccagggat tagatattgc tataatgtgc tgccacaggg atggaaagga 
     841 tcaccagcaa taktccaggc tagcatgaca aaaatcttag agccctttag aacacaaaac 
     901 ccagaaatag tcatctacca atacgtggat gacttgcktg taggatctga tttagaaata 
     961 gggcaacata garcaaaaat agaggagtta agagaacatc tattaargtg gggacttacc 
    1021 acaccagaca agaagcatca gaaagaaccc ccatttctat ggatggggta tgaactccat 
    1081 cctgacaaat ggacagtaca gcctayacag ctgccagaaa aggatagctg gactgtcaat 
    1141 gacataca
//
last modified: Tue May 31 10:56 2022


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