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LOCUS JN638105 1148 bp DNA linear VRL 26-SEP-2011
DEFINITION HIV-1 isolate A178 from South Africa pol protein (pol) and gag
protein (gag) genes, partial cds
ACCESSION JN638105
VERSION JN638105.1 GI:346420542
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1148)
Show all sequences for reference 1
AUTHORS van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
TITLE Antiretroviral resistance patterns and factors associated with
resistance in adult patients failing NNRTI-based regimens in the
western cape, South Africa
JOURNAL J. Med. Virol. 83 (10), 1764-1769 (2011)
PUBMED 21837793
REFERENCE 2 (bases 1 to 1148)
Show all sequences for reference 2
AUTHORS van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
TITLE Direct Submission
JOURNAL Submitted (29-AUG-2011) Division of Medical Virology, Stellenbosch
University, Francie van Zijl Drive, Parow 7500, South Africa
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Sequence name A178 Patient sex Female
Patient age 18 Patient comment d4T 3TC NVP CD4 count 716 Viral Load
880 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..1148
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="A178"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="16-Jan-2009"
gene <1..>1148
/gene="pol"
CDS <1..>1148
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEO24052.1"
/db_xref="GI:346420544"
/translation="TSRGLQARGDNPRSEAGAEGQGTXNFPQITLWQRPLVSIKVGGQ
TREALLDTGADDTVLEEINLPGKWKPRMIGGIGGFIKVRQYDQITIEIAGKKAIGTVL
IGPTPINIIGRNMLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIXALT
AICEEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEIQLG
IPHPAGLKKKKSVTVLDVGDAYFSVPLDEGFRKYTAFTIPSINNETPGIRYCYNVLPQ
GWKGSPAIXQASMTKILEPFRTQNPEIVIYQYVDDLXVGSDLEIGQHRXKIEELREHL
LXWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPXQLPEKDSWTVNDI"
gene <1..118
/gene="gag"
CDS <1..118
/gene="gag"
/codon_start="2"
/transl_table="1"
/product="gag protein"
/protein_id="AEO24051.1"
/db_xref="GI:346420543"
/translation="PAEDFRPEETTPAPKQEPRDXEPLISLKSLFGSDPLSQ"
BASE COUNT 437 a 209 c 246 g 240 t 16 other
ORIGIN
1 accagcagag gacttcaggc ccgaggagac aacccccgct ccgaagcagg agccgaggga
61 carggaaccy ttaatttccc tcaaatcact ctttggcagc gaccccttgt ctcaataaaa
121 gtagggggcc agacaaggga ggctctctta gacacaggag cagatgatac agtattagaa
181 gaaataaatt tgccaggaaa atggaaacca agaatgatag gaggaattgg aggttttatt
241 aaagtaagac aatatgatca aataactata gaaatygcag graaaaaggc tataggtaca
301 gtattaatag gacctacacc tatcaacata attggragra atatgttgac tcagcttgga
361 tgcacactaa attttccaat yagtcctatt gaaactgtac cagtaaaatt aaagccagga
421 atggatggcc caaaagttaa rcaatggcca ttgacagaag aaaaaataar agcattaaca
481 gcaatttgtg aagaaatgga gaaggaagga aaaattacaa aaattgggcc tgaaaatcca
541 tataacactc cagtatttgc cataaaaaag aaggacagca ctaaatggag aaaactagta
601 gatttcaggg aactcaataa aagaactcaa gacttttggg aaattcagtt aggaatacca
661 cacccagcag ggttaaagaa gaaaaaatca gtaacagtgc tggatgtggg rgatgcatat
721 ttttcagttc ctttagatga aggtttcagg aagtayactg cattcaccat acctagcata
781 aacaatgaaa caccagggat tagatattgc tataatgtgc tgccacaggg atggaaagga
841 tcaccagcaa taktccaggc tagcatgaca aaaatcttag agccctttag aacacaaaac
901 ccagaaatag tcatctacca atacgtggat gacttgcktg taggatctga tttagaaata
961 gggcaacata garcaaaaat agaggagtta agagaacatc tattaargtg gggacttacc
1021 acaccagaca agaagcatca gaaagaaccc ccatttctat ggatggggta tgaactccat
1081 cctgacaaat ggacagtaca gcctayacag ctgccagaaa aggatagctg gactgtcaat
1141 gacataca
//
last modified: Tue May 31 10:56 2022