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LOCUS JN562823 1408 bp RNA linear VRL 24-OCT-2011
DEFINITION HIV-1 isolate 4012_P_2 from USA envelope glycoprotein (env) gene,
partial cds
ACCESSION JN562823
VERSION JN562823.1 GI:353257355
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1408)
Show all sequences for reference 1
AUTHORS Schnell,G., Joseph,S., Spudich,S., Price,R.W. and Swanstrom,R.
TITLE HIV-1 replication in the central nervous system occurs in two
distinct cell types.
JOURNAL PLoS. Pathog.. 7(10); e1002286 (2011)
PUBMED 22007152
REFERENCE 2 (bases 1 to 1408)
Show all sequences for reference 2
AUTHORS Schnell,G., Joseph,S., Spudich,S., Price,R.W. and Swanstrom,R.
TITLE Direct Submission
JOURNAL Submitted (08-AUG-2011) Microbiology and Immunology, University of
North Carolina at Chapel Hill, Chapel Hill, NC 27599-7295, USA
FEATURES Location/Qualifiers
source 1..1408
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="4012_P_2"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="03-Sep-1997"
gene <1..>1408
/gene="env"
CDS <1..>1408
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AEQ76007.1"
/db_xref="GI:353257356"
/translation="CVTLNCTDLNKTNDTNKTNATNGGKLMEKGEMKNCSFNITTNIR
DKRQKEYALFYKLDVVPIDDDNDNTSYRLISCNTSVITQACPKISFEPIPIHYCAPAG
FAIIKCNNKTFNGKGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVIIRSDNFTDN
AKTIIVQLKEVVEINCTRPNNNTRKSIHITPGKAFYATGDIIGNIRQAHCNISEKKWN
NTLKQIVTKLREQFGNKTIVFNQSSGGDPEIVMHTFNCGGEFFYCDTTQLFNSTWNGT
EESNDTESNITLTLPCRIKQIVNMWQEVGKAMYAPPIRGIISCSSNITGLLLVRDGGK
PNNETNNGTEVFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVG
LGAMFLGFLGAAGSTMGAASITLTVQARHLLSGIVQQQNNLLKAIEAQQHLLQLTVWG
IKQLQARVLAIERYLKDQQ"
BASE COUNT 541 a 233 c 299 g 335 t
ORIGIN
1 tgtgttactt taaattgcac tgacttgaac aaaactaatg ataccaataa gaccaatgct
61 actaatggag ggaaactgat ggaaaaagga gagatgaaaa actgctcttt taatatcacc
121 acaaacataa gagataaaag acagaaggaa tatgcactct tttataaact tgatgtagta
181 ccaatagatg atgataatga taatactagc tataggttga taagttgtaa cacctcagtc
241 attacacagg catgtccaaa gatatccttt gaaccaattc ccatacatta ttgtgccccg
301 gctggttttg cgattataaa gtgtaataat aagacattca atggaaaagg gccatgtaca
361 aatgtcagca cagtacagtg tacacatgga attaggccag tagtatcaac tcaactgctg
421 ttaaatggca gtctagcaga agaagaggta ataattagat ctgacaattt cacagacaat
481 gctaaaacca taatagtaca gctaaaagaa gttgtagaaa ttaattgtac aagacccaac
541 aacaatacaa gaaaaagtat acatataaca ccagggaaag cattttatgc aacaggagac
601 ataataggaa atataagaca agcacattgt aacattagtg aaaaaaaatg gaataacact
661 ttaaaacaga tagttacaaa attaagagaa caatttggga ataagacaat agtctttaat
721 caatcctcag gaggggaccc agaaattgta atgcacactt ttaattgtgg aggggaattt
781 ttctactgtg atacaacaca attgtttaat agtacttgga atggtactga agagtcaaat
841 gacactgaaa gtaatatcac actcacactc ccatgcagaa taaaacaaat tgtaaacatg
901 tggcaggaag taggaaaagc aatgtatgcc cctcccatca gaggaataat tagctgctca
961 tcaaatatta cagggctgct attagtaaga gatggtggta agcccaataa tgagactaat
1021 aatggtactg aggtcttcag acctggagga ggaaatatga aggacaattg gagaagtgaa
1081 ttatataaat ataaagtagt aaaaattgaa ccattaggag tagcacccac taaggcaaaa
1141 agaagagtgg tgcagagaga gaaaagagca gtgggattag gagctatgtt ccttgggttc
1201 ttgggagcag caggaagcac tatgggcgca gcgtcgataa cgctgacggt acaggccaga
1261 cacttattgt ctggtatagt gcaacagcaa aacaatttgc tgaaggctat tgaggcgcaa
1321 cagcatctgt tgcaactcac agtctggggc atcaagcagc tccaggccag agtcctggct
1381 atagaaagat acctaaagga tcaacagc
//
last modified: Tue May 31 10:56 2022