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LOCUS JN562780 2583 bp RNA linear VRL 24-OCT-2011
DEFINITION HIV-1 isolate 4059_P21 from USA envelope glycoprotein (env) gene,
complete cds
ACCESSION JN562780
VERSION JN562780.1 GI:353257269
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2583)
Show all sequences for reference 1
AUTHORS Schnell,G., Joseph,S., Spudich,S., Price,R.W. and Swanstrom,R.
TITLE HIV-1 replication in the central nervous system occurs in two
distinct cell types.
JOURNAL PLoS. Pathog.. 7(10); e1002286 (2011)
PUBMED 22007152
REFERENCE 2 (bases 1 to 2583)
Show all sequences for reference 2
AUTHORS Schnell,G., Joseph,S., Spudich,S., Price,R.W. and Swanstrom,R.
TITLE Direct Submission
JOURNAL Submitted (08-AUG-2011) Microbiology and Immunology, University of
North Carolina at Chapel Hill, Chapel Hill, NC 27599-7295, USA
FEATURES Location/Qualifiers
source 1..2583
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="4059_P21"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="16-Aug-2006"
gene 1..2583
/gene="env"
CDS 1..2583
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AEQ75964.1"
/db_xref="GI:353257270"
/translation="MRVKGIRKNYQHLWRWGTMLTMLLGILMICNVTGNLWVTVYYGV
PVWKEATTTLFCASDAKSYDTEVHNVWATHACVPTDPSPQELILENVTENFNAWKNNM
VDQMHEDIISLWDESLKPCVKLTPLCVNLNCTKVNKTDTNTANTDGVGGMNEEMKNCS
FNVTTNEENKVQKKYALLYKLDIVSIDSSSSGKNYSNYRLISCNTSVITQACPKVSFE
PIPIHYCAPAGFAILKCNDKKFNGKGECGNVSTVQCTHGIRPVVSTHLLLNGSLAEEE
VVIRSDNFSNNAKTIIVQLNKTVKIICTRPNNNTRKGINLGQGRAWYATTDIVGDIRQ
AHCNISRTEWNNTLKLVAKKLLEQYGTNKTIKFEQPVQGGDPEILMHSFNCGGEFFYC
NTSKLFNSTWKNTSTWNSTEENGTLTLPCKIRQFINMWQKVGKAMYAPPISGRINCLS
NITGLLLIRDGGGGGNDTTETFRPGGGDMKDNWRSELYKYKVIKIEPLGIAPTKAKRR
VVQREKRAVGLGAMFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQSNLLRAIEAQ
QHLLQLTVWGIKQLQARVLAVEAYLKDQQLLGIWGCSGKRICTTVVPWNSSWSNKTYN
AIWDNMTWMQWDKEIENYTGQIYTLIEEAQIQQEKNEQELLELDKWASLWNWFDITKW
LWYIKIFIMIVGGLIGLRIIFTVLSIVNRVRQGYSPLSFQTHLPTPRGPDRPEEIEEE
GGERDRGGSGRLVNGFLAIFWVDLRSLCLFSYHRLRDLLLIVARTVELLGRRGWEALK
YLWNLLQYWIQELKNSAVSLLNVTAIAVGEGTDRVIEAVQRIFRAIIHIPRRIRQGLE
KILL"
BASE COUNT 900 a 433 c 612 g 638 t
ORIGIN
1 atgagagtga aggggatcag gaagaattat cagcacttgt ggaggtgggg cactatgctc
61 accatgctcc ttgggatatt gatgatctgt aatgttacag gaaacttgtg ggtcacagtc
121 tattatgggg tacctgtgtg gaaagaggca accaccactc tattttgtgc atcagatgct
181 aaatcatatg atacagaggt acataatgtt tgggccacac atgcctgtgt acccacagac
241 cccagcccac aagaactaat actggaaaat gtgacagaaa attttaatgc gtggaaaaat
301 aacatggtag accagatgca tgaggatata atcagtttat gggatgaaag cctgaagcca
361 tgtgtaaaat taaccccact ctgtgtcaat ttaaattgca ctaaagtaaa caaaactgat
421 actaataccg ccaatactga tggggtagga gggatgaatg aagaaatgaa aaactgctct
481 ttcaatgtta ccacaaatga agagaataag gtgcagaaaa aatatgcact tctttataaa
541 cttgatatag tatcaataga tagtagtagt agtggtaaaa actatagtaa ctataggttg
601 ataagttgta acacctcagt tattacccag gcctgtccaa aagtatcctt tgagccaatt
661 cccatacatt attgtgcccc ggctggtttt gcgattctaa agtgtaatga taagaaattc
721 aatggaaaag gagagtgtgg aaatgtcagc acagtacaat gtacacatgg aattagacca
781 gtagtatcaa ctcacttgtt gttaaatggc agtctagcag aagaagaggt agtaattaga
841 tctgacaatt tctcaaacaa tgctaaaact ataatagtac agctgaataa aactgtaaaa
901 attatttgca caagacccaa taacaataca agaaaaggta taaatttagg acaagggaga
961 gcatggtatg caacaacaga catagtagga gatataagac aagcacattg taacattagt
1021 agaacagaat ggaataacac tttaaaactg gtagctaaga aattactaga acaatatgga
1081 actaataaaa caataaaatt tgagcaacct gtgcagggag gggacccaga aattctaatg
1141 cacagtttta attgtggagg ggaatttttc tactgtaata catcaaaact gtttaatagt
1201 acttggaaaa atactagtac ttggaatagc actgaagaaa atggcacact cacactccca
1261 tgtaaaataa ggcaatttat aaacatgtgg caaaaagtag gaaaagcaat gtatgcccct
1321 cccatcagtg gacgaattaa ctgcttatca aatattactg ggctgctatt aataagagat
1381 ggtggtggtg gaggtaatga cacgaccgag accttcagac ctggaggagg agatatgaag
1441 gacaattgga gaagtgagtt atataaatac aaagtaatca aaattgaacc attaggaata
1501 gcacccacca aggcaaagag aagagtggtg cagagagaaa agagagcagt gggattagga
1561 gctatgttcc ttgggttctt gggagcagca ggaagcacta tgggcgcagc gtcactaacg
1621 ctgacggtac aggccagaca attattgtct ggtatagtgc aacagcagag caatttgctg
1681 agggctattg aggcgcaaca gcatctgctg caactcacag tctggggcat aaaacagctc
1741 caggcaagag tcctggctgt ggaagcatac ctaaaggatc aacagctcct ggggatttgg
1801 ggttgctctg gaaaacgcat ctgcaccact gttgtgcctt ggaatagtag ctggagtaat
1861 aaaacttata atgctatttg ggataatatg acctggatgc agtgggacaa agaaattgaa
1921 aattacacag gacaaatata caccttaatt gaagaagcgc aaatccagca ggaaaagaat
1981 gaacaagaat tattggaatt agataaatgg gcaagtttgt ggaattggtt tgacataaca
2041 aaatggctgt ggtatataaa aatattcata atgatagttg gaggcttgat aggtttaaga
2101 ataattttta cagtactttc tatagtgaat agagttaggc agggatactc acccttatcg
2161 tttcagaccc acctcccaac cccgagggga cccgacaggc ccgaagaaat cgaagaagaa
2221 ggtggcgaga gagacagagg tggatccggt cgcttagtga acggcttctt agcgattttc
2281 tgggtcgacc tccggagcct gtgccttttc agctaccacc gcttgagaga cttactcttg
2341 attgtagcaa ggactgtgga acttctggga cgcagggggt gggaagcact caaatacctg
2401 tggaatctcc tgcagtattg gattcaggaa ctaaagaata gtgctgttag tttgctcaac
2461 gtcacagcta tagcagtagg tgaagggaca gatagggtta tagaagcagt acaaagaatt
2521 tttagagcta ttattcatat acctagaaga ataagacagg gcttggaaaa gattttgcta
2581 taa
//
last modified: Tue May 31 10:56 2022