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LOCUS	    JN562780		    2583 bp    RNA     linear	VRL 24-OCT-2011
DEFINITION  HIV-1 isolate 4059_P21 from USA envelope glycoprotein (env) gene,
	    complete cds
ACCESSION   JN562780
VERSION     JN562780.1 GI:353257269
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2583)
            Show all sequences for reference 1
  AUTHORS   Schnell,G., Joseph,S., Spudich,S., Price,R.W. and Swanstrom,R.
  TITLE     HIV-1 replication in the central nervous system occurs in two
	    distinct cell types.
  JOURNAL   PLoS. Pathog.. 7(10); e1002286 (2011)
  PUBMED    22007152
REFERENCE   2 (bases 1 to 2583)
            Show all sequences for reference 2
  AUTHORS   Schnell,G., Joseph,S., Spudich,S., Price,R.W. and Swanstrom,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-AUG-2011) Microbiology and Immunology, University of
	    North Carolina at Chapel Hill, Chapel Hill, NC 27599-7295, USA
FEATURES             Location/Qualifiers
     source	     1..2583
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="4059_P21"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="16-Aug-2006"
     gene	     1..2583
		     /gene="env"
     CDS	     1..2583
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AEQ75964.1"
		     /db_xref="GI:353257270"
		     /translation="MRVKGIRKNYQHLWRWGTMLTMLLGILMICNVTGNLWVTVYYGV
		     PVWKEATTTLFCASDAKSYDTEVHNVWATHACVPTDPSPQELILENVTENFNAWKNNM
		     VDQMHEDIISLWDESLKPCVKLTPLCVNLNCTKVNKTDTNTANTDGVGGMNEEMKNCS
		     FNVTTNEENKVQKKYALLYKLDIVSIDSSSSGKNYSNYRLISCNTSVITQACPKVSFE
		     PIPIHYCAPAGFAILKCNDKKFNGKGECGNVSTVQCTHGIRPVVSTHLLLNGSLAEEE
		     VVIRSDNFSNNAKTIIVQLNKTVKIICTRPNNNTRKGINLGQGRAWYATTDIVGDIRQ
		     AHCNISRTEWNNTLKLVAKKLLEQYGTNKTIKFEQPVQGGDPEILMHSFNCGGEFFYC
		     NTSKLFNSTWKNTSTWNSTEENGTLTLPCKIRQFINMWQKVGKAMYAPPISGRINCLS
		     NITGLLLIRDGGGGGNDTTETFRPGGGDMKDNWRSELYKYKVIKIEPLGIAPTKAKRR
		     VVQREKRAVGLGAMFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQSNLLRAIEAQ
		     QHLLQLTVWGIKQLQARVLAVEAYLKDQQLLGIWGCSGKRICTTVVPWNSSWSNKTYN
		     AIWDNMTWMQWDKEIENYTGQIYTLIEEAQIQQEKNEQELLELDKWASLWNWFDITKW
		     LWYIKIFIMIVGGLIGLRIIFTVLSIVNRVRQGYSPLSFQTHLPTPRGPDRPEEIEEE
		     GGERDRGGSGRLVNGFLAIFWVDLRSLCLFSYHRLRDLLLIVARTVELLGRRGWEALK
		     YLWNLLQYWIQELKNSAVSLLNVTAIAVGEGTDRVIEAVQRIFRAIIHIPRRIRQGLE
		     KILL"
BASE COUNT	900 a	 433 c	  612 g    638 t
ORIGIN
       1 atgagagtga aggggatcag gaagaattat cagcacttgt ggaggtgggg cactatgctc 
      61 accatgctcc ttgggatatt gatgatctgt aatgttacag gaaacttgtg ggtcacagtc 
     121 tattatgggg tacctgtgtg gaaagaggca accaccactc tattttgtgc atcagatgct 
     181 aaatcatatg atacagaggt acataatgtt tgggccacac atgcctgtgt acccacagac 
     241 cccagcccac aagaactaat actggaaaat gtgacagaaa attttaatgc gtggaaaaat 
     301 aacatggtag accagatgca tgaggatata atcagtttat gggatgaaag cctgaagcca 
     361 tgtgtaaaat taaccccact ctgtgtcaat ttaaattgca ctaaagtaaa caaaactgat 
     421 actaataccg ccaatactga tggggtagga gggatgaatg aagaaatgaa aaactgctct 
     481 ttcaatgtta ccacaaatga agagaataag gtgcagaaaa aatatgcact tctttataaa 
     541 cttgatatag tatcaataga tagtagtagt agtggtaaaa actatagtaa ctataggttg 
     601 ataagttgta acacctcagt tattacccag gcctgtccaa aagtatcctt tgagccaatt 
     661 cccatacatt attgtgcccc ggctggtttt gcgattctaa agtgtaatga taagaaattc 
     721 aatggaaaag gagagtgtgg aaatgtcagc acagtacaat gtacacatgg aattagacca 
     781 gtagtatcaa ctcacttgtt gttaaatggc agtctagcag aagaagaggt agtaattaga 
     841 tctgacaatt tctcaaacaa tgctaaaact ataatagtac agctgaataa aactgtaaaa 
     901 attatttgca caagacccaa taacaataca agaaaaggta taaatttagg acaagggaga 
     961 gcatggtatg caacaacaga catagtagga gatataagac aagcacattg taacattagt 
    1021 agaacagaat ggaataacac tttaaaactg gtagctaaga aattactaga acaatatgga 
    1081 actaataaaa caataaaatt tgagcaacct gtgcagggag gggacccaga aattctaatg 
    1141 cacagtttta attgtggagg ggaatttttc tactgtaata catcaaaact gtttaatagt 
    1201 acttggaaaa atactagtac ttggaatagc actgaagaaa atggcacact cacactccca 
    1261 tgtaaaataa ggcaatttat aaacatgtgg caaaaagtag gaaaagcaat gtatgcccct 
    1321 cccatcagtg gacgaattaa ctgcttatca aatattactg ggctgctatt aataagagat 
    1381 ggtggtggtg gaggtaatga cacgaccgag accttcagac ctggaggagg agatatgaag 
    1441 gacaattgga gaagtgagtt atataaatac aaagtaatca aaattgaacc attaggaata 
    1501 gcacccacca aggcaaagag aagagtggtg cagagagaaa agagagcagt gggattagga 
    1561 gctatgttcc ttgggttctt gggagcagca ggaagcacta tgggcgcagc gtcactaacg 
    1621 ctgacggtac aggccagaca attattgtct ggtatagtgc aacagcagag caatttgctg 
    1681 agggctattg aggcgcaaca gcatctgctg caactcacag tctggggcat aaaacagctc 
    1741 caggcaagag tcctggctgt ggaagcatac ctaaaggatc aacagctcct ggggatttgg 
    1801 ggttgctctg gaaaacgcat ctgcaccact gttgtgcctt ggaatagtag ctggagtaat 
    1861 aaaacttata atgctatttg ggataatatg acctggatgc agtgggacaa agaaattgaa 
    1921 aattacacag gacaaatata caccttaatt gaagaagcgc aaatccagca ggaaaagaat 
    1981 gaacaagaat tattggaatt agataaatgg gcaagtttgt ggaattggtt tgacataaca 
    2041 aaatggctgt ggtatataaa aatattcata atgatagttg gaggcttgat aggtttaaga 
    2101 ataattttta cagtactttc tatagtgaat agagttaggc agggatactc acccttatcg 
    2161 tttcagaccc acctcccaac cccgagggga cccgacaggc ccgaagaaat cgaagaagaa 
    2221 ggtggcgaga gagacagagg tggatccggt cgcttagtga acggcttctt agcgattttc 
    2281 tgggtcgacc tccggagcct gtgccttttc agctaccacc gcttgagaga cttactcttg 
    2341 attgtagcaa ggactgtgga acttctggga cgcagggggt gggaagcact caaatacctg 
    2401 tggaatctcc tgcagtattg gattcaggaa ctaaagaata gtgctgttag tttgctcaac 
    2461 gtcacagcta tagcagtagg tgaagggaca gatagggtta tagaagcagt acaaagaatt 
    2521 tttagagcta ttattcatat acctagaaga ataagacagg gcttggaaaa gattttgcta 
    2581 taa
//
last modified: Tue May 31 10:56 2022


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