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LOCUS JN393533 622 bp DNA linear VRL 06-AUG-2011
DEFINITION HIV-1 isolate LTS30_2010 from Malawi env glycoprotein (env) gene,
partial cds
ACCESSION JN393533
VERSION JN393533.1 GI:342209986
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 622)
Show all sequences for reference 1
AUTHORS Seager,I., Leeson,M.D., Crampin,A.C., Mulawa,D., French,N.,
Glynn,J.R., Travers,S.A.A. and McCormack,G.P.
TITLE HIV type 1 mutational patterns in HIV type 1 subtype C-infected
long-term survivors in Karonga District Malawi: further analysis
and correction.
JOURNAL AIDS Res. Hum. Retroviruses. 28(3); 308-13 (2012)
PUBMED 21702696
REFERENCE 2 (bases 1 to 622)
Show all sequences for reference 2
AUTHORS Seager,I., Leeson,M., Crampin,A.C., Mulawa,D., French,N.,
Glynn,J.R., Travers,S.A. and McCormack,G.P.
TITLE Direct Submission
JOURNAL Submitted (24-JUL-2011) Zoology, National University of Ireland
Galway, Martin Ryan Institute, Galway, Ireland
FEATURES Location/Qualifiers
source 1..622
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="LTS30_2010"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Malawi"
/collection_date="2010"
gene <1..>622
/gene="env"
/note="C2_V3"
CDS <1..>622
/gene="env"
/note="C2-V3"
/codon_start="2"
/transl_table="1"
/product="env glycoprotein"
/protein_id="AEL17004.1"
/db_xref="GI:342209987"
/translation="SIHSYTYCAPAGYAILKCNDQMFNGTGECHNVSTVQCTHGIKPV
VSTQLLLNGSLAEKDIIIRSENLTNNAKTIIIQLNETVEINCTRPNNNTRKSIRIGPG
QSFYATDDIIGDIRQAHCNISRTKWNETLYKVATALRKHFNSTIVFAAASGGDIEITT
HSVNCAGEFFYCNTSQMFTWNGSLSMEDGSDNDTLTIPCRIKQFVNM"
BASE COUNT 235 a 110 c 123 g 154 t
ORIGIN
1 ttcgatccat tcctatactt attgtgcccc agctggttat gcaattctaa agtgtaatga
61 tcagatgttc aatggaacgg gagaatgcca taatgtcagc acagtacaat gcacacatgg
121 gattaaacca gtggtgtcaa ctcaactgct gttgaatggc agcctagcag aaaaagacat
181 aataattaga tctgagaatc tgacaaacaa tgccaaaact ataataatac aacttaatga
241 aactgtagag attaattgta caaggcccaa caacaataca agaaaaagta tacgtatagg
301 accaggacag tcattctatg caacagatga cataatagga gacataagac aagcccattg
361 taacattagt agaacaaaat ggaatgaaac tttgtataag gtggctacag cattacgcaa
421 gcactttaat agcacaatag tttttgctgc agcctcagga ggggacatag aaatcacaac
481 acatagtgtt aattgtgcag gagaattttt ctattgcaat acatcacaaa tgttcacatg
541 gaatggtagc ctgagtatgg aggatgggtc agataatgat acactgacaa tcccatgcag
601 aataaaacaa tttgtaaaca tg
//
last modified: Tue May 31 10:56 2022