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LOCUS	    JN393533		     622 bp    DNA     linear	VRL 06-AUG-2011
DEFINITION  HIV-1 isolate LTS30_2010 from Malawi env glycoprotein (env) gene,
	    partial cds
ACCESSION   JN393533
VERSION     JN393533.1 GI:342209986
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 622)
            Show all sequences for reference 1
  AUTHORS   Seager,I., Leeson,M.D., Crampin,A.C., Mulawa,D., French,N.,
	    Glynn,J.R., Travers,S.A.A. and McCormack,G.P.
  TITLE     HIV type 1 mutational patterns in HIV type 1 subtype C-infected
	    long-term survivors in Karonga District Malawi: further analysis
	    and correction.
  JOURNAL   AIDS Res. Hum. Retroviruses. 28(3); 308-13 (2012)
  PUBMED    21702696
REFERENCE   2 (bases 1 to 622)
            Show all sequences for reference 2
  AUTHORS   Seager,I., Leeson,M., Crampin,A.C., Mulawa,D., French,N.,
	    Glynn,J.R., Travers,S.A. and McCormack,G.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUL-2011) Zoology, National University of Ireland
	    Galway, Martin Ryan Institute, Galway, Ireland
FEATURES             Location/Qualifiers
     source	     1..622
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="LTS30_2010"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Malawi"
		     /collection_date="2010"
     gene	     <1..>622
		     /gene="env"
		     /note="C2_V3"
     CDS	     <1..>622
		     /gene="env"
		     /note="C2-V3"
		     /codon_start="2"
		     /transl_table="1"
		     /product="env glycoprotein"
		     /protein_id="AEL17004.1"
		     /db_xref="GI:342209987"
		     /translation="SIHSYTYCAPAGYAILKCNDQMFNGTGECHNVSTVQCTHGIKPV
		     VSTQLLLNGSLAEKDIIIRSENLTNNAKTIIIQLNETVEINCTRPNNNTRKSIRIGPG
		     QSFYATDDIIGDIRQAHCNISRTKWNETLYKVATALRKHFNSTIVFAAASGGDIEITT
		     HSVNCAGEFFYCNTSQMFTWNGSLSMEDGSDNDTLTIPCRIKQFVNM"
BASE COUNT	235 a	 110 c	  123 g    154 t
ORIGIN
       1 ttcgatccat tcctatactt attgtgcccc agctggttat gcaattctaa agtgtaatga 
      61 tcagatgttc aatggaacgg gagaatgcca taatgtcagc acagtacaat gcacacatgg 
     121 gattaaacca gtggtgtcaa ctcaactgct gttgaatggc agcctagcag aaaaagacat 
     181 aataattaga tctgagaatc tgacaaacaa tgccaaaact ataataatac aacttaatga 
     241 aactgtagag attaattgta caaggcccaa caacaataca agaaaaagta tacgtatagg 
     301 accaggacag tcattctatg caacagatga cataatagga gacataagac aagcccattg 
     361 taacattagt agaacaaaat ggaatgaaac tttgtataag gtggctacag cattacgcaa 
     421 gcactttaat agcacaatag tttttgctgc agcctcagga ggggacatag aaatcacaac 
     481 acatagtgtt aattgtgcag gagaattttt ctattgcaat acatcacaaa tgttcacatg 
     541 gaatggtagc ctgagtatgg aggatgggtc agataatgat acactgacaa tcccatgcag 
     601 aataaaacaa tttgtaaaca tg
//
last modified: Tue May 31 10:56 2022


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