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LOCUS JN371825 323 bp DNA linear VRL 03-AUG-2011
DEFINITION HIV-1 isolate B1E55MID10_c55_256 nonfunctional env protein (env)
gene, partial sequence
ACCESSION JN371825
VERSION JN371825.1 GI:342155108
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 323)
Show all sequences for reference 1
AUTHORS Eshleman,S., Hudelson,S., Redd,A., Wang,L., Debes,R., Chen,Y.,
Martens,C., Ricklefs,S., Selig,E., Porcella,S., Piwower-manning,E.,
McCauley,M., Hosseinipour,M., Kumwenda,J., Hakim,J.,
Chariyalertsak,S., Bruyn,G., Grinsztejn,B., Kumarasamy,N.,
Makhema,J., Mayer,K., Pilotto,J., Santos,B., Quinn,T., Cohen,M. and
Hughes,J.
TITLE Direct Submission
JOURNAL Submitted (08-JUL-2011) School of Medicine, Johns Hopkins
University, Wolfe Street, Baltimore, MD 21205, USA
REFERENCE 2
Show all sequences for reference 2
AUTHORS Eshleman,S.H., Hudelson,S.E., Redd,A.D., Wang,L., Debes,R.,
Chen,Y.Q., Martens,C.A., Ricklefs,S.M., Selig,E.J., Porcella,S.F.,
Munshaw,S., Ray,S.C., Piwowar-Manning,E., McCauley,M.,
Hosseinipour,M.C., Kumwenda,J., Hakim,J.G., Chariyalertsak,S., de
Bruyn,G., Grinsztejn,B., Kumarasamy,N., Makhema,J., Mayer,K.H.,
Pilotto,J., Santos,B.R., Quinn,T.C., Cohen,M.S. and Hughes,J.P.
TITLE Analysis of Genetic Linkage of HIV From Couples Enrolled in the HIV
Prevention Trials Network 052 Trial.
JOURNAL J. Infect. Dis.. 204(12); 1918-26 (2011)
PUBMED 21990420
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Sequence Name B1E55MID10_c55_256
Amplification Strategy pyrosequencing Patient Code Couple 052-2104
subject PA ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..323
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="B1E55MID10_c55_256"
/host="Homo sapiens"
/db_xref="taxon:11676"
/note="collected between 2005 and 2011; sequence derived
from 256 multiple pyrosequencing reads subtype: C"
gene <1..>323
/gene="env"
misc_feature <1..>323
/gene="env"
/note="nonfunctional env protein due to mutation"
BASE COUNT 115 a 53 c 81 g 74 t
ORIGIN
1 attaagcagc tccaggcaag agtcctggct atagaaagat acctagggga tcaacagctc
61 ctagggatat ggggctgctc tggaaaactc atctgcacca ctaatgtgcc ttggaacggt
121 agttggagta ataaatctta cacagagatt tgggataaca tgacctggat gcagtgggat
181 aaagaaatta gtaattacac agacacaata tataggttgc ttgaaaatca caaaaccagc
241 aggaaaaaaa tgaagaagag ttactggcat tggacaagtg gaaaaatctg tggaattggt
301 ttgacataac aaactggctg tgg
//
last modified: Tue May 31 10:56 2022