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LOCUS	    JN314981		    1302 bp    RNA     linear	VRL 27-JUL-2012
DEFINITION  HIV-1 isolate IN-NARI-4-106 from India pol protein (pol) gene,
	    partial cds
ACCESSION   JN314981
VERSION     JN314981.1 GI:392312542
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Hingankar,N.K., Thorat,S.R., Deshpande,A., Rajasekaran,S.,
	    Chandrasekar,C., Kumar,S., Srikantiah,P., Chaturbhuj,D.N.,
	    Datkar,S.R., Deshmukh,P.S., Kulkarni,S.S., Sane,S., Reddy,D.C.,
	    Garg,R., Jordan,M.R., Kabra,S., Tripathy,S.P. and Paranjape,R.S.
  TITLE     Initial virologic response and HIV drug resistance among
	    HIV-infected individuals initiating first-line antiretroviral
	    therapy at 2 clinics in Chennai and Mumbai, India
  JOURNAL   Clin. Infect. Dis. 54, S348-S354 (2012)
  PUBMED    22544202
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Hingankar,N.K., Thorat,S.R., Chaturbhuj,D.N., Tripathy,S.P.,
	    Rajasekaran,S., Srikantiah,P., Chandrasekar,C., J,S.K.,
	    Datkar,S.R., Deshmukh,P.S., Kulkarni,S., Sane,S., Reddy,D.C.S.,
	    Garg,R., Jordan,M.R., Kabra,S. and Paranjape,R.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUL-2011) Drug Resistance Lab, Department of
	    Molecular Virology, National AIDS Research Institute, (Indian
	    Council of Medical Research), Plot 73, ''G'' Block, M.I.D.C.,
	    Bhosari, Pune, Maharashtra 411026, India
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="IN-NARI-4-106"
		     /isolation_source="HIV-1 infected female starting
		     first-line ART (baseline)"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="India"
		     /collection_date="11-Apr-2008"
		     /note="subtype: C"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AFM56216.1"
		     /db_xref="GI:392312543"
		     /translation="PQITLWQRPLVSIKVGGQTKEALLDTGADDTVLEELSLPGKWKP
		     KMIGGIGGFIKVRQYDQIXIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTXICDEMEKEGKITKIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDEDFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQYSMTKILEPFRANNPD
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELRXHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVXQLCKLJRGTKALTEIV
		     PLTEEAELELAENREILKEXVHGVYYDPSKDLIAEIQKQGDD"
BASE COUNT	509 a	 211 c	  267 g    289 t     26 other
ORIGIN
       1 cctcaaatca ctctttggca gcgacccctt gtctcaataa aagtaggggg ccaaaccaaa 
      61 gaggctctct tagacacagg agcagatgat acagtattag aagaattaag tttrccagga 
     121 aaatggaaac caaaaatgat aggrggaatt ggaggtttta tcaaagtaag acaatatgat 
     181 caaatamcta tagaaatttg tggaaaraag gctataggta cagtattagt rggacccaca 
     241 cctgtcaaca taattggaag aaatatgttg actcagcttg gatgcacact aaattttcca 
     301 attagtccya ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagmaatttg tgatgaratg 
     421 gagaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccaatattt 
     481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagacttcag ggaactcaat 
     541 aaaagaactc aagatttttg ggaagtccar ttaggaatac cacacccagc agggttaaaa 
     601 aagaaaaaat cagtgacagt rctggatgtg ggggatgcat atttttcagt tcctttagat 
     661 gaagacttca ggaaatatac tgcattcacc atacctagta gaaacaatga aacaccaggg 
     721 attagatatc aatataatgt gcttccacag ggatggaaag gatcaccagc aatattccag 
     781 tatagcatga caaaaatctt agagcccttt agagcaaaca atccagacat agtcatctat 
     841 caatatatgg atgacttgta tgtaggatct gatttagaga tagggcaaca tagagcaaaa 
     901 atagaggaat taagaaawca yctgttaaag tggggattta ccacaccaga caagaaacat 
     961 cagaaagaac ccccatttct ttggatgggr tatgaactcc atcctgacaa atggacagta 
    1021 cagcctatac agctgccaga raaggatagc tggactgtca atgatataca gaagttagtg 
    1081 ggaaaattaa aytgggcaag tcagatttac ccagggatya aagtaargca rctttgtaaa 
    1141 ctcmttaggg graccaargc aytaacagaa atagtaccac taactgaaga agcagaacta 
    1201 gaattrgcag aaaacaggga aattctaaaa gaamcagtac atggrgtata ttatgaccca 
    1261 tcaaaagayt tgatagctga aatacaaaaa cagggagatg ac
//
last modified: Tue May 31 10:56 2022


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