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LOCUS JN314981 1302 bp RNA linear VRL 27-JUL-2012
DEFINITION HIV-1 isolate IN-NARI-4-106 from India pol protein (pol) gene,
partial cds
ACCESSION JN314981
VERSION JN314981.1 GI:392312542
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Hingankar,N.K., Thorat,S.R., Deshpande,A., Rajasekaran,S.,
Chandrasekar,C., Kumar,S., Srikantiah,P., Chaturbhuj,D.N.,
Datkar,S.R., Deshmukh,P.S., Kulkarni,S.S., Sane,S., Reddy,D.C.,
Garg,R., Jordan,M.R., Kabra,S., Tripathy,S.P. and Paranjape,R.S.
TITLE Initial virologic response and HIV drug resistance among
HIV-infected individuals initiating first-line antiretroviral
therapy at 2 clinics in Chennai and Mumbai, India
JOURNAL Clin. Infect. Dis. 54, S348-S354 (2012)
PUBMED 22544202
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Hingankar,N.K., Thorat,S.R., Chaturbhuj,D.N., Tripathy,S.P.,
Rajasekaran,S., Srikantiah,P., Chandrasekar,C., J,S.K.,
Datkar,S.R., Deshmukh,P.S., Kulkarni,S., Sane,S., Reddy,D.C.S.,
Garg,R., Jordan,M.R., Kabra,S. and Paranjape,R.S.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2011) Drug Resistance Lab, Department of
Molecular Virology, National AIDS Research Institute, (Indian
Council of Medical Research), Plot 73, ''G'' Block, M.I.D.C.,
Bhosari, Pune, Maharashtra 411026, India
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="IN-NARI-4-106"
/isolation_source="HIV-1 infected female starting
first-line ART (baseline)"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="India"
/collection_date="11-Apr-2008"
/note="subtype: C"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AFM56216.1"
/db_xref="GI:392312543"
/translation="PQITLWQRPLVSIKVGGQTKEALLDTGADDTVLEELSLPGKWKP
KMIGGIGGFIKVRQYDQIXIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTXICDEMEKEGKITKIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDEDFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQYSMTKILEPFRANNPD
IVIYQYMDDLYVGSDLEIGQHRAKIEELRXHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVXQLCKLJRGTKALTEIV
PLTEEAELELAENREILKEXVHGVYYDPSKDLIAEIQKQGDD"
BASE COUNT 509 a 211 c 267 g 289 t 26 other
ORIGIN
1 cctcaaatca ctctttggca gcgacccctt gtctcaataa aagtaggggg ccaaaccaaa
61 gaggctctct tagacacagg agcagatgat acagtattag aagaattaag tttrccagga
121 aaatggaaac caaaaatgat aggrggaatt ggaggtttta tcaaagtaag acaatatgat
181 caaatamcta tagaaatttg tggaaaraag gctataggta cagtattagt rggacccaca
241 cctgtcaaca taattggaag aaatatgttg actcagcttg gatgcacact aaattttcca
301 attagtccya ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagmaatttg tgatgaratg
421 gagaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccaatattt
481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagacttcag ggaactcaat
541 aaaagaactc aagatttttg ggaagtccar ttaggaatac cacacccagc agggttaaaa
601 aagaaaaaat cagtgacagt rctggatgtg ggggatgcat atttttcagt tcctttagat
661 gaagacttca ggaaatatac tgcattcacc atacctagta gaaacaatga aacaccaggg
721 attagatatc aatataatgt gcttccacag ggatggaaag gatcaccagc aatattccag
781 tatagcatga caaaaatctt agagcccttt agagcaaaca atccagacat agtcatctat
841 caatatatgg atgacttgta tgtaggatct gatttagaga tagggcaaca tagagcaaaa
901 atagaggaat taagaaawca yctgttaaag tggggattta ccacaccaga caagaaacat
961 cagaaagaac ccccatttct ttggatgggr tatgaactcc atcctgacaa atggacagta
1021 cagcctatac agctgccaga raaggatagc tggactgtca atgatataca gaagttagtg
1081 ggaaaattaa aytgggcaag tcagatttac ccagggatya aagtaargca rctttgtaaa
1141 ctcmttaggg graccaargc aytaacagaa atagtaccac taactgaaga agcagaacta
1201 gaattrgcag aaaacaggga aattctaaaa gaamcagtac atggrgtata ttatgaccca
1261 tcaaaagayt tgatagctga aatacaaaaa cagggagatg ac
//
last modified: Tue May 31 10:56 2022