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LOCUS JN314941 1302 bp RNA linear VRL 27-JUL-2012
DEFINITION HIV-1 isolate IN-NARI-4-058 from India pol protein (pol) gene,
partial cds
ACCESSION JN314941
VERSION JN314941.1 GI:392312462
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Hingankar,N.K., Thorat,S.R., Deshpande,A., Rajasekaran,S.,
Chandrasekar,C., Kumar,S., Srikantiah,P., Chaturbhuj,D.N.,
Datkar,S.R., Deshmukh,P.S., Kulkarni,S.S., Sane,S., Reddy,D.C.,
Garg,R., Jordan,M.R., Kabra,S., Tripathy,S.P. and Paranjape,R.S.
TITLE Initial virologic response and HIV drug resistance among
HIV-infected individuals initiating first-line antiretroviral
therapy at 2 clinics in Chennai and Mumbai, India
JOURNAL Clin. Infect. Dis. 54, S348-S354 (2012)
PUBMED 22544202
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Hingankar,N.K., Thorat,S.R., Chaturbhuj,D.N., Tripathy,S.P.,
Rajasekaran,S., Srikantiah,P., Chandrasekar,C., J,S.K.,
Datkar,S.R., Deshmukh,P.S., Kulkarni,S., Sane,S., Reddy,D.C.S.,
Garg,R., Jordan,M.R., Kabra,S. and Paranjape,R.S.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2011) Drug Resistance Lab, Department of
Molecular Virology, National AIDS Research Institute, (Indian
Council of Medical Research), Plot 73, ''G'' Block, M.I.D.C.,
Bhosari, Pune, Maharashtra 411026, India
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="IN-NARI-4-058"
/isolation_source="HIV-1 infected male starting first-line
ART (baseline)"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="India"
/collection_date="08-Apr-2008"
/note="subtype: C"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AFM56176.1"
/db_xref="GI:392312463"
/translation="PQITLWQRPLVTIKVGGQIKEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQITIEICGKKAIGTVLVGPTPINIIGRNMLTQLGCTLNFPIS
PIDTVPVKLKPGMDGPKVKQWPLSEEKIKALTAICEXMEKEGKITKIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LXEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRTQNPD
IVIYQYMDDLYVGSDLEIGQHRAKVEELRXHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTDIV
PLTEEAELELAENREILXEPVHGVYYDPSKDLIAEIQKQGND"
BASE COUNT 516 a 217 c 265 g 292 t 12 other
ORIGIN
1 cctcaaatca ctctttggca rcgacccctt gtcacaataa aagtaggggg ccaaataaaa
61 gaggctcttt tagatacagg agcagatgat acagtattag aagaaataaa tttgccagga
121 aaatggaaac caaaaatgat aggrggaatt ggaggtttta tcaaagtaag acagtatgat
181 caaataacta tagaaatttg tggaaagaag gctataggta cagtactagt gggacccaca
241 cctatcaaca taattggaag raacatgttg actcaacttg gatgcacact aaattttcca
301 attagtccta ttgatactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aarcaatggc cattatcaga agagaaaata aaagcattaa cagcaatctg tgaggawatg
421 garaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac cccaatattt
481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaactcaat
541 aaaagaactc aagatttttg ggaagttcaa ttaggaatac cacatccagc agggttaaaa
601 aagaaaaaat cagtaacagt actagatgta ggggatgcat atttttcagt tcctttayat
661 gaagacttca ggaagtatac tgcattcacc atacctagta caaacaatga aacaccaggg
721 attagatatc aatataatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 tgtagyatga caaaratctt agagcccttt aggacacaaa atccagacat agtcatctat
841 caatatatgg atgacttgta tgtaggatct gacttagaaa tagggcaaca cagagcaaaa
901 gtagaggaat taagaraaca tctgttaaaa tggggattta ccacaccaga caagaaacat
961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta
1021 cagcctatac agctgccaga aaaggatagc tggactgtca atgatataca gaagttagtg
1081 ggaaaattaa actgggcaag tcagatttac ccagggatta aagtaaggca actttgtaaa
1141 ctccttaggg graccaaagc actaacagac atagtaccac taactgaaga agcagaatta
1201 gaattggcag agaacaggga aattctaara gaaccagtac atggggtata ttatgacccc
1261 tcaaaagact taatagctga aatacagaaa caagggaatg ac
//
last modified: Tue May 31 10:56 2022