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LOCUS	    JN314941		    1302 bp    RNA     linear	VRL 27-JUL-2012
DEFINITION  HIV-1 isolate IN-NARI-4-058 from India pol protein (pol) gene,
	    partial cds
ACCESSION   JN314941
VERSION     JN314941.1 GI:392312462
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Hingankar,N.K., Thorat,S.R., Deshpande,A., Rajasekaran,S.,
	    Chandrasekar,C., Kumar,S., Srikantiah,P., Chaturbhuj,D.N.,
	    Datkar,S.R., Deshmukh,P.S., Kulkarni,S.S., Sane,S., Reddy,D.C.,
	    Garg,R., Jordan,M.R., Kabra,S., Tripathy,S.P. and Paranjape,R.S.
  TITLE     Initial virologic response and HIV drug resistance among
	    HIV-infected individuals initiating first-line antiretroviral
	    therapy at 2 clinics in Chennai and Mumbai, India
  JOURNAL   Clin. Infect. Dis. 54, S348-S354 (2012)
  PUBMED    22544202
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Hingankar,N.K., Thorat,S.R., Chaturbhuj,D.N., Tripathy,S.P.,
	    Rajasekaran,S., Srikantiah,P., Chandrasekar,C., J,S.K.,
	    Datkar,S.R., Deshmukh,P.S., Kulkarni,S., Sane,S., Reddy,D.C.S.,
	    Garg,R., Jordan,M.R., Kabra,S. and Paranjape,R.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUL-2011) Drug Resistance Lab, Department of
	    Molecular Virology, National AIDS Research Institute, (Indian
	    Council of Medical Research), Plot 73, ''G'' Block, M.I.D.C.,
	    Bhosari, Pune, Maharashtra 411026, India
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="IN-NARI-4-058"
		     /isolation_source="HIV-1 infected male starting first-line
		     ART (baseline)"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="India"
		     /collection_date="08-Apr-2008"
		     /note="subtype: C"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AFM56176.1"
		     /db_xref="GI:392312463"
		     /translation="PQITLWQRPLVTIKVGGQIKEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQITIEICGKKAIGTVLVGPTPINIIGRNMLTQLGCTLNFPIS
		     PIDTVPVKLKPGMDGPKVKQWPLSEEKIKALTAICEXMEKEGKITKIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LXEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRTQNPD
		     IVIYQYMDDLYVGSDLEIGQHRAKVEELRXHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTDIV
		     PLTEEAELELAENREILXEPVHGVYYDPSKDLIAEIQKQGND"
BASE COUNT	516 a	 217 c	  265 g    292 t     12 other
ORIGIN
       1 cctcaaatca ctctttggca rcgacccctt gtcacaataa aagtaggggg ccaaataaaa 
      61 gaggctcttt tagatacagg agcagatgat acagtattag aagaaataaa tttgccagga 
     121 aaatggaaac caaaaatgat aggrggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caaataacta tagaaatttg tggaaagaag gctataggta cagtactagt gggacccaca 
     241 cctatcaaca taattggaag raacatgttg actcaacttg gatgcacact aaattttcca 
     301 attagtccta ttgatactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aarcaatggc cattatcaga agagaaaata aaagcattaa cagcaatctg tgaggawatg 
     421 garaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac cccaatattt 
     481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaactcaat 
     541 aaaagaactc aagatttttg ggaagttcaa ttaggaatac cacatccagc agggttaaaa 
     601 aagaaaaaat cagtaacagt actagatgta ggggatgcat atttttcagt tcctttayat 
     661 gaagacttca ggaagtatac tgcattcacc atacctagta caaacaatga aacaccaggg 
     721 attagatatc aatataatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 tgtagyatga caaaratctt agagcccttt aggacacaaa atccagacat agtcatctat 
     841 caatatatgg atgacttgta tgtaggatct gacttagaaa tagggcaaca cagagcaaaa 
     901 gtagaggaat taagaraaca tctgttaaaa tggggattta ccacaccaga caagaaacat 
     961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta 
    1021 cagcctatac agctgccaga aaaggatagc tggactgtca atgatataca gaagttagtg 
    1081 ggaaaattaa actgggcaag tcagatttac ccagggatta aagtaaggca actttgtaaa 
    1141 ctccttaggg graccaaagc actaacagac atagtaccac taactgaaga agcagaatta 
    1201 gaattggcag agaacaggga aattctaara gaaccagtac atggggtata ttatgacccc 
    1261 tcaaaagact taatagctga aatacagaaa caagggaatg ac
//
last modified: Tue May 31 10:56 2022


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