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LOCUS	    JN251888		    2991 bp    RNA     linear	VRL 12-SEP-2011
DEFINITION  HIV-1 isolate s1.11.3 from Sweden rev protein (rev) and tat protein
	    (tat) genes, partial cds; vpu protein (vpu) and envelope
	    glycoprotein (env) genes, complete cds; and nef protein (nef) gene,
	    partial cds
ACCESSION   JN251888
VERSION     JN251888.1 GI:346312801
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2991)
            Show all sequences for reference 1
  AUTHORS   Skar,H., Gutenkunst,R.N., Wilbe Ramsay,K., Alaeus,A., Albert,J. and
	    Leitner,T.
  TITLE     Daily Sampling of an HIV-1 Patient with Slowly Progressing Disease
	    Displays Persistence of Multiple env Subpopulations Consistent with
	    Neutrality
  JOURNAL   PLoS ONE 6 (8), E21747 (2011)
  PUBMED    21829600
REFERENCE   2 (bases 1 to 2991)
            Show all sequences for reference 2
  AUTHORS   Leitner,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUL-2011) Theoretical Biology and Biophysics, Los
	    Alamos National Laboratory, MS K710, Los Alamos, NM 87545, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Sequence Name s1.11.3 Amplification
	    strategy limiting dilution PCR Culture method uncultured Drug naive
	    yes Patient health status asymptomatic Patient sex M Patient
	    progression LTNP Sample timepoint 11 Sample Date 12-Oct-98
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2991
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="s1.11.3"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Sweden"
		     /collection_date="12-Oct-1998"
		     /note="subtype: B"
     gene	     <1..2651
		     /gene="rev"
     CDS	     join(<1..58,2368..2651)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AEO22552.1"
		     /db_xref="GI:346312803"
		     /translation="DSDEELLKAVRLIKFLYQSNPLPSPEGTRQARRNRRRRWREKQR
		     QIRTISERILSTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPA
		     VLETGTKEECC"
     gene	     <1..2458
		     /gene="tat"
     CDS	     join(<1..58,2368..2458)
		     /gene="tat"
		     /codon_start="3"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AEO22551.1"
		     /db_xref="GI:346312802"
		     /translation="QRRRAPQGSPTHQVSLPKQPTSQPRGDPTGPKESKKKVERETET
		     DPDD"
     gene	     75..320
		     /gene="vpu"
     CDS	     75..320
		     /gene="vpu"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="AEO22553.1"
		     /db_xref="GI:346312804"
		     /translation="MQSLHIVAIVALVVAAIIAIVVWTIVFIEYRKILRQRKIDRLIE
		     RISERAEDSGNESEGDQEELSALVGMGHHAPWNIDDL"
     gene	     238..2784
		     /gene="env"
     CDS	     238..2784
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AEO22554.1"
		     /db_xref="GI:346312805"
		     /translation="MKVREIRKSYQHWWGWGIMLLGILMICSTADKLWVTIYYGVPVW
		     KEATTTLFCASDAKSYDTEVHNVWATHACVPTDPNPQEVELKNVTENFNMWKNNMVEQ
		     MHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNATNATNSSGGTMEGGEMKNCSFNVT
		     TNIRDKKKNEYALFYKLDVIPIDNDNTSYRLINCDTSVITQACPKVSFEPIPIHYCTP
		     AGFAILKCNDTKFNGSGPCKNVSTVQCTHGIRPTVSTQLLLNGSLAEEEVVIRSENFT
		     NNVKIIIVQLKESVDITCIRPNNNTRRGIHIGPGRTLYATGGIIGDIRQAHCNISGGQ
		     WNNTLQQIVIKLREQFGNKTIAFDQSSGGDPEVVMHMFNCGGEFFYCNSSQLFDSTWP
		     ANGTRNESIEENITLPCRIKQIINMWQEVGKAMYAPPIRGPIKCLSKITGLILTRDGG
		     DSTNQSTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRSVTLG
		     AMFLGFLGAAGSTMGAASMALTVQARQLLSGIVQQQNNLLKAIEAQQHLLQLTVWGIK
		     QLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNTSWSNKSLSEIWNNMTWMEWE
		     REIDNYTSLIYTLIEESQNQQEKNEQELLELDKWASLWNWFDITKWLWYIKIFIMIVG
		     GLVGLRIVFAVLSIVNRVRQGYSPLSFQTHFPAPRGPDRPEGIEEEGGERNRDRSGRL
		     VNGFLALIWDDLRSLCLFSYHRLRDLLLIATRIVELLGRRGWEALKYWWNLLQYWRQE
		     LKKSAVSLLNVTAIAVAEGTDRIIEVLQRACRAILHIPRRIRQGLERVLQ"
     gene	     2786..>2991
		     /gene="nef"
     CDS	     2786..>2991
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="AEO22555.1"
		     /db_xref="GI:346312806"
		     /translation="MGGKWSKSSPVGWPAIRERMKRAEPAADGVGAASRDLERHGALT
		     SSNTVHNNAACAWLEAQEEEEVGFP"
BASE COUNT     1048 a	 496 c	  734 g    713 t
ORIGIN
       1 gacagcgacg aagagctcct caaggcagtc cgactcatca agtttctcta ccaaagcagt 
      61 aagtagtaca tgtaatgcaa tctttacata tagtagcaat agtagcatta gtagtagcag 
     121 caataatagc aatagtagtg tggaccatag tattcataga atatagaaaa atattaagac 
     181 aaagaaaaat agacaggtta attgaaagaa taagtgaaag agcagaagac agtggcaatg 
     241 aaagtgaggg agatcaggaa gagctatcag cactggtggg gatggggcat catgctcctt 
     301 ggaatattga tgatttgtag tactgcagac aaattgtggg taacaatcta ttatggggta 
     361 cctgtgtgga aagaagcaac taccactcta ttttgtgcat cagatgctaa atcatatgat 
     421 acagaggtac ataatgtctg ggctacacat gcctgtgtac ccacagaccc caacccacaa 
     481 gaagtagaat tgaaaaatgt gacagaaaat tttaacatgt ggaaaaataa catggtagaa 
     541 caaatgcatg aggatataat cagtttatgg gatcaaagct taaagccatg tgtaaaatta 
     601 accccactct gtgttacttt aaattgcact gatttgagaa atgctactaa tgccactaat 
     661 agtagcgggg gaacgatgga gggaggagaa atgaaaaact gctctttcaa tgtcaccaca 
     721 aacataagag acaagaagaa gaatgaatat gcactttttt ataaacttga tgtaatacca 
     781 atagataatg ataatactag ctataggttg ataaattgtg acacctcagt cattacacag 
     841 gcctgtccaa aggtatcctt tgaaccaatt cccatacatt attgtacccc agctggtttt 
     901 gcgattctaa agtgtaatga tacgaagttc aatggatcag gaccatgtaa aaatgtcagc 
     961 acagtacagt gtacccatgg aattaggcca acagtgtcaa ctcaactgtt attaaatggc 
    1021 agtctagcag aagaagaggt agtaattagg tctgaaaatt tcacgaataa tgttaaaatc 
    1081 ataatagtgc agctgaagga atctgtagac attacttgta taaggcccaa caacaataca 
    1141 agaagaggta tacatatagg accagggaga acactttatg caacaggagg aataatagga 
    1201 gatataagac aagcacattg taacattagt ggaggacaat ggaataatac tttacaacag 
    1261 atagttataa aattaagaga acaatttggg aataaaacaa tagcctttga tcaatcctca 
    1321 ggaggggacc cagaagttgt aatgcacatg tttaattgtg ggggggaatt tttctactgt 
    1381 aattcatcac aactgtttga tagtacttgg ccggctaatg gtactagaaa tgagagcatt 
    1441 gaagaaaata tcacactccc atgtagaata aaacaaatta taaacatgtg gcaggaggta 
    1501 ggaaaagcaa tgtatgcccc tcccatcaga ggaccaatta agtgtttatc aaagattaca 
    1561 gggctgatat taacaagaga tggtggtgat agcacgaacc aaagcacaga gatcttcaga 
    1621 ccgggaggag gagatatgag ggacaattgg agaagtgaat tgtataaata caaagtagta 
    1681 aaaattgaac cattaggggt agcacccacc aaggcaaaga gacgagtggt gcagagagaa 
    1741 aaaagatcag tgacactagg agctatgttc cttggattct tgggagcagc aggaagcact 
    1801 atgggcgcag cgtcaatggc gctgacggta caggctagac aattattgtc gggtatagtg 
    1861 caacagcaga acaatttgct gaaggctatt gaggcgcaac aacatctgtt gcaactcaca 
    1921 gtctggggca tcaaacagct ccaggcaaga gtcctggctg tggaaagata cctaaaggat 
    1981 caacagctcc tgggaatttg gggttgctct ggaaaactca tttgcaccac tgctgtgcct 
    2041 tggaatacta gttggagtaa taaatctttg agtgagattt ggaacaacat gacctggatg 
    2101 gagtgggaaa gagaaattga caattacaca agcttaatat acactttaat tgaagaatcg 
    2161 cagaaccaac aagaaaagaa tgaacaagaa ttattggaat tagataaatg ggcaagtttg 
    2221 tggaattggt ttgacataac aaaatggctg tggtatataa aaatattcat aatgatagta 
    2281 ggaggcttgg taggtttaag aatagttttt gctgtacttt ctatagtgaa tagagttagg 
    2341 cagggatact caccattatc atttcagacc cacttcccag ccccgagggg acccgacagg 
    2401 cccgaaggaa tcgaagaaga aggtggagag agaaacagag acagatccgg acgattagtg 
    2461 aacggattct tagcacttat ctgggacgat ctgcggagcc tgtgcctctt cagctaccac 
    2521 cgcttgagag acttactctt gattgcaacg aggattgtgg aacttctggg acgcaggggg 
    2581 tgggaagccc tcaaatattg gtggaatctc ctgcagtatt ggagacagga actaaagaag 
    2641 agtgctgtta gcttgctcaa tgtcacagcc atagcagtag ctgaggggac agataggatt 
    2701 atagaagtat tacaaagagc ttgtagagct attctccaca tacctagaag aataagacag 
    2761 ggcttggaaa gggttttgca ataagatggg tggcaagtgg tcaaaaagta gtccagttgg 
    2821 atggcctgct ataagggaaa gaatgaaacg agctgagcca gcagcagatg gggtgggagc 
    2881 agcatctcga gatctggaaa gacatggagc actcacaagt agcaatacag tacataataa 
    2941 tgctgcatgt gcctggctag aagcacaaga ggaggaggag gtgggttttc c
//
last modified: Tue May 31 10:56 2022


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