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LOCUS	    JN251852		    3012 bp    RNA     linear	VRL 12-SEP-2011
DEFINITION  HIV-1 isolate s5.2.5 from Sweden rev protein (rev) and tat protein
	    (tat) genes, partial cds; vpu protein (vpu) gene, complete cds;
	    nonfunctional env protein (env) gene, complete sequence; and nef
	    protein (nef) gene, partial cds
ACCESSION   JN251852
VERSION     JN251852.1 GI:346312599
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 3012)
            Show all sequences for reference 1
  AUTHORS   Skar,H., Gutenkunst,R.N., Wilbe Ramsay,K., Alaeus,A., Albert,J. and
	    Leitner,T.
  TITLE     Daily Sampling of an HIV-1 Patient with Slowly Progressing Disease
	    Displays Persistence of Multiple env Subpopulations Consistent with
	    Neutrality
  JOURNAL   PLoS ONE 6 (8), E21747 (2011)
  PUBMED    21829600
REFERENCE   2 (bases 1 to 3012)
            Show all sequences for reference 2
  AUTHORS   Leitner,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUL-2011) Theoretical Biology and Biophysics, Los
	    Alamos National Laboratory, MS K710, Los Alamos, NM 87545, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Sequence Name s5.2.5 Amplification
	    strategy limiting dilution PCR Culture method uncultured Drug naive
	    yes Patient health status asymptomatic Patient sex M Patient
	    progression LTNP Sample timepoint 2 Sample Date 3-Oct-98
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..3012
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="s5.2.5"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Sweden"
		     /collection_date="03-Oct-1998"
		     /note="subtype: B"
     gene	     <1..2662
		     /gene="rev"
     CDS	     join(<1..58,2379..2662)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AEO22386.1"
		     /db_xref="GI:346312601"
		     /translation="DSDEELLKAVRLIKFLYQSNPLPSPEGTRQARRNRRRRWRERQR
		     QIRTISERILNTYLGRSAEPVPLQLPPLERLTLDCNEDCETSGTQGVGSPQILVESPA
		     VLETGTKEECC"
     gene	     <1..2469
		     /gene="tat"
     CDS	     join(<1..58,2379..2469)
		     /gene="tat"
		     /codon_start="3"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AEO22385.1"
		     /db_xref="GI:346312600"
		     /translation="QRRRAPQGSPTHQVSLPKQPTSQPRGDPTGPKESKKKVERETET
		     DPDD"
     gene	     75..320
		     /gene="vpu"
     CDS	     75..320
		     /gene="vpu"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="AEO22387.1"
		     /db_xref="GI:346312602"
		     /translation="MQSLHIVAIVALVVAAIIAIVVWTIVLIEYRKILRQRKIDRLIE
		     RISERAEDSGNESEGDQEELSALVGMGHHAPWNIDDL"
     gene	     238..2795
		     /gene="env"
     misc_feature    238..2795
		     /gene="env"
		     /note="nonfunctional env protein due to mutation"
     gene	     2797..>3012
		     /gene="nef"
     CDS	     2797..>3012
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="AEO22388.1"
		     /db_xref="GI:346312603"
		     /translation="MGGQWSKSSLVGWPAIRERMKRAEPAADGVGAASLDLERHGALT
		     SSNTVHNNAACAWLEAQEEEEVGFPVRP"
BASE COUNT     1068 a	 501 c	  720 g    723 t
ORIGIN
       1 gacagcgacg aagagctcct caaggcagtc cgactcatca agtttctcta ccaaagcagt 
      61 aagtagtaca tgtaatgcaa tctttacata tagtagcaat agtagcatta gtagtagcag 
     121 caataatagc aatagtagtg tggaccatag tactcataga atatagaaaa atattaagac 
     181 aaagaaaaat agacaggtta attgaaagaa taagtgaaag agcagaagac agtggcaatg 
     241 aaagtgaggg agatcaggaa gagctgtcag cacttgtggg gatggggcat catgctcctt 
     301 ggaatattga tgatctgtag tactgcagac aaattgtggg tcacagttta ttatggggta 
     361 cctgtgtgga aagaagcaac taccactcta ttttgtgcat cagatgctaa atcatatgat 
     421 acagaagtac ataatgtctg ggctacacat gcctgtgtac ccacagaccc caacccacaa 
     481 gaagtagtat tggaaaatgt gacagaaaat tttaacatgt ggaaaaataa catggtagaa 
     541 caaatgcatg aggatataat cagtttatgg gatcaaagct taaagccatg tgtaaaatta 
     601 accccactct gtgttacttt aaattgcact gatttgagaa atgctactaa tgccactaat 
     661 agtagcgggg gaacgatgga gggaggagaa atgaaaaatt gttctttcaa tatcaccaca 
     721 aacataagag acaagacgaa gaagaaaaac gaatatgcac ttttttataa acttgatgta 
     781 ataccaatag ataatgataa tactaatact agctataggt tgataaattg taacacctca 
     841 gtcattacac aggcctgtcc aaaggtatcc tttgaaccaa ttcccataca ttattgtgcc 
     901 ccggctggtt ttgcgattat aaagtgtaat gataagaagt tcaatggatc aggaccatgt 
     961 aaaaatgtca gcacagtaca atgtacacat ggaattaggc caacagtgtc aactcaactg 
    1021 ttattaaatg gcagtctagc agaagaagag gtagtaatta ggtctgaaaa tttcacgaat 
    1081 aatgctaaaa tcataatagt acagctgaag aaacctgtag aaattatttg tgcaaggccc 
    1141 aacaacaata caagaaaagg gatacatatg ggactaggga aacactttat gcaacaggag 
    1201 gaataatagg agatataaga caagcacatt gtaacattag taaaacagat tgaaatgata 
    1261 ctttacaaca gatagttata aaattaagag aacaatttaa gaataaaaca atagtctttg 
    1321 atcaatcctc aggaggggac ccagaagttg taatgcacat gtttaattgt gggggggaat 
    1381 ttttctactg tgaatcatca ctactgttta ataatacttg ggttaatagt actagaaatg 
    1441 atagtactaa agaaaatagc acacttacac tcccatgtag aataaaacaa attataaaca 
    1501 tgtggcagga ggtaggaaag gcaatgtatg cccctcccat cagaggacaa attaagtgtt 
    1561 catcaaagat tacagggctg atattaacaa gagatggtgg taatagcccg aaccaaagca 
    1621 cagagatctt cagaccggga ggaggagata tgagggacaa ttggagaagt gaactatata 
    1681 aatacaaagt agtaaaaatt gaaccattag gggtagcacc caccaaggca aagagacgag 
    1741 tggtgcagag agaaaaaaga acagtcatag gagctgtgtt ccttgggttc ttgggagcag 
    1801 caggaagcac tatgggcgca gcgtcaatga cgctgacggt acaagctaga caattattgt 
    1861 ctggtatagt gcaacagcag aacaatttgc tgaaggctat tgaagcgcaa caacatctgt 
    1921 tgcaactcac agtctggggc atcaagcagc tccaggcaag agtcctggct gtggaaagat 
    1981 acctaaagga tcaacagctc ctggggattt ggggttgctc tggaaaactc atttgcacca 
    2041 ctgctgtgcc ttggaatact agttggagta ataaatctct gaatgagatt tgggacaaca 
    2101 tgacctggat ggagtgggaa agagaaattc acaattacac aagcttaata tacactttaa 
    2161 ttgaagaatc gcaaacccac caagaaaaga atgaacaaga attattggaa ttagataagt 
    2221 gggcaagttt gtggaattgg tttgacataa caaaatggct gtggtatata aaaatattca 
    2281 taatgatagt aggaggcttg gtaggtttaa gaatagtttt tgctgtactt tctatagtga 
    2341 atagagttag gcagggatac tcaccattat catttcagac ccacttccca gccccgaggg 
    2401 gacccgacag gcccgaagga atcgaagaag aaggtggaga gagagacaga gacagatccg 
    2461 gacgattagt gaacggattc ttaacactta tctgggacga tctgcggagc ctgtgcctct 
    2521 tcagctacca ccgcttgaga gacttactct tgattgtaac gaagattgtg aaacttctgg 
    2581 gacgcagggg gtgggaagcc ctcaaatatt ggtggaatct cctgcagtat tggagacagg 
    2641 aactaaagaa gagtgctgtt agcttgttca atgccatagc catagcagta gctgagggga 
    2701 cagataggat tatagaagta ttacaaagag cttttaaagc tcttatccac atacctagaa 
    2761 gaataagaca gggcttggaa aggattttgc aataagatgg gtggccagtg gtcaaaaagt 
    2821 agtctggttg gatggcctgc tataagggaa agaatgaaac gagctgagcc agcagcagat 
    2881 ggggtggggg cagcatctct agacctggaa agacatggag cactcacaag tagcaataca 
    2941 gtacataata atgctgcatg tgcctggcta gaagcacaag aggaggagga ggtgggtttt 
    3001 ccagtcagac ct
//
last modified: Tue May 31 10:56 2022


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