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LOCUS JN251850 2983 bp RNA linear VRL 12-SEP-2011
DEFINITION HIV-1 isolate s5.522.3 from Sweden rev protein (rev) and tat
protein (tat) genes, partial cds; vpu protein (vpu) and envelope
glycoprotein (env) genes, complete cds; and nef protein (nef) gene,
partial cds
ACCESSION JN251850
VERSION JN251850.1 GI:346312587
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2983)
Show all sequences for reference 1
AUTHORS Skar,H., Gutenkunst,R.N., Wilbe Ramsay,K., Alaeus,A., Albert,J. and
Leitner,T.
TITLE Daily Sampling of an HIV-1 Patient with Slowly Progressing Disease
Displays Persistence of Multiple env Subpopulations Consistent with
Neutrality
JOURNAL PLoS ONE 6 (8), E21747 (2011)
PUBMED 21829600
REFERENCE 2 (bases 1 to 2983)
Show all sequences for reference 2
AUTHORS Leitner,T.
TITLE Direct Submission
JOURNAL Submitted (13-JUL-2011) Theoretical Biology and Biophysics, Los
Alamos National Laboratory, MS K710, Los Alamos, NM 87545, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Sequence Name s5.522.3 Amplification
strategy limiting dilution PCR Culture method uncultured Drug naive
yes Patient health status asymptomatic Patient sex M Patient
progression LTNP Sample timepoint 522 Sample Date 6-Mar-00
##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2983
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="s5.522.3"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Sweden"
/collection_date="06-Mar-2000"
/note="subtype: B"
gene <1..2663
/gene="rev"
CDS join(<1..58,2380..2663)
/gene="rev"
/codon_start="1"
/transl_table="1"
/product="rev protein"
/protein_id="AEO22376.1"
/db_xref="GI:346312589"
/translation="DSDEELLKAVRLIKFLYQSNPLPSPEGTRQARRNRRRRWRERQR
QIRTISERILNTYLGRSAEPVPLQLPPLERLTLDCNEDCETSGTQGVGSPQILVESPA
VLETGTKEKCC"
gene <1..2470
/gene="tat"
CDS join(<1..58,2380..2470)
/gene="tat"
/codon_start="3"
/transl_table="1"
/product="tat protein"
/protein_id="AEO22375.1"
/db_xref="GI:346312588"
/translation="QRRRAPQGSPTHQVSLPKQPTSQPRGDPTGPKESKKKVERETET
DPDD"
gene 75..320
/gene="vpu"
CDS 75..320
/gene="vpu"
/codon_start="1"
/transl_table="1"
/product="vpu protein"
/protein_id="AEO22377.1"
/db_xref="GI:346312590"
/translation="MQSLHIVAIVALVVAAIIAIVVWTIVLIEYRKILRQRKIDRLVE
RISERAEDSGNESEGDQEELSALVGMGHHAPWNIDDL"
gene 238..2796
/gene="env"
CDS 238..2796
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AEO22378.1"
/db_xref="GI:346312591"
/translation="MKVREIRKSCQHLWGWGIMLLGILMICSTADKLWVTVYYGVPVW
KEATTTLFCASDAKSYDTEVHNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQ
MHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNATNATNSSGGTMEGGEMKNCSFNIT
TNIRDKTKKKNEYALFYKLDVIPIDDDNTNTSYRLINCNTSVITQACPKVSFEPIPIH
YCAPAGFAIIKCNDKKFNGSGPCKNVSTVQCTHGIRPTVSTQLLLNGSLAEEEVVIRS
ENFTNNAKSIIVQLKKPVEIICARPNNNTRKGIHMGLGKTLYATGGIIGDIRQAHCNI
SKTDWNDTLQQIVTKLREQFRNKTIAFDQSSGGDPEVVMHMFNCGGEFFYCESSLLFN
NTWVNSTRNNSTKENSTLTLPCRIKQIINMWQEVGKAMYAPPIRGQIKCSSKITGLIL
TRDGGNSPNQSTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKR
TVIGAVFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLKAIEAQQHLLQLTV
WGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNTSWSNKSLNEIWNNMTW
MEWEREIHNYTSLIYTLIEESQNQQEKNEQELLELDKWASLWNWFDITKWLWYIKIFI
MIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHFPAPRGPDRPEGIEEEGGERDRDR
SGRLVNGFLTLIWDDLRSLCLFSYHRLRDLLLIVTKIVKLLGRRGWEALKYWWNLLQY
WRQELKKSAVSLFNAIAIAVAEGTDRIIEVLQRVYRAFIHIPRRIRQGLERILQ"
gene 2798..>2983
/gene="nef"
CDS 2798..>2983
/gene="nef"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="AEO22379.1"
/db_xref="GI:346312592"
/translation="MGGQWSKSSLVGWPAIRERMKRAEPAADGVGAASRDLERHGALT
SSNTVHNNAACAWLEAQE"
BASE COUNT 1064 a 495 c 715 g 709 t
ORIGIN
1 gacagcgacg aagagctcct caaggcagtc cgactcatca agtttctcta ccaaagcagt
61 aagtagtaca tgtaatgcaa tctttacata tagtagcaat agtagcatta gtagtagcag
121 caataatagc aatagtagtg tggaccatag tactcataga atatagaaaa atattaagac
181 aaagaaaaat agacaggtta gttgaaagaa taagtgaaag agcagaagac agtggcaatg
241 aaagtgaggg agatcaggaa gagctgtcag cacttgtggg gatggggcat catgctcctt
301 ggaatattga tgatctgtag tactgcagac aaattgtggg tcacagttta ttatggggta
361 cctgtgtgga aagaagcaac taccactcta ttttgtgcat cagatgctaa atcatatgat
421 acagaagtac ataatgtctg ggctacacat gcctgtgtac ccacagaccc caacccacaa
481 gaagtagtat tggaaaatgt gacagaaaat tttaacatgt ggaaaaataa catggtagaa
541 caaatgcatg aggatataat cagtttatgg gatcaaagtt taaagccatg tgtaaaatta
601 accccactct gtgttacttt aaattgcact gatttgagaa atgctactaa tgccactaat
661 agtagcgggg gaacgatgga gggaggagaa atgaaaaact gttctttcaa tatcaccaca
721 aacataagag acaagacgaa gaagaagaac gaatatgcac ttttttataa acttgatgta
781 ataccaatag atgatgataa tactaatact agctataggt tgataaattg taacacctca
841 gtcattacac aggcctgtcc aaaggtatcc tttgaaccaa ttcccataca ttattgtgcc
901 ccggctggtt ttgcgattat aaagtgtaat gataagaagt tcaatggatc aggaccatgt
961 aaaaatgtca gcacagtaca atgtacacat ggaattaggc caacagtgtc aactcaactg
1021 ttattaaatg gcagtctagc agaagaagag gtagtaatta ggtctgaaaa tttcacaaat
1081 aatgctaaaa gcataatagt gcagctgaag aaacctgtag aaattatttg tgcaaggccc
1141 aacaacaata caagaaaagg gatacatatg ggactaggga aaacacttta tgcaacagga
1201 ggaataatag gagatataag acaagcacat tgtaacatta gtaaaacaga ctggaatgat
1261 actttacaac agatagttac aaaattaaga gaacaattta ggaataaaac aatagccttt
1321 gatcaatcct caggagggga cccagaagtt gtaatgcaca tgtttaattg tgggggggaa
1381 tttttctact gtgaatcatc actactgttt aataatactt gggttaatag tactagaaat
1441 aatagtacta aagaaaatag cacacttaca ctcccatgta gaataaaaca aattataaac
1501 atgtggcagg aggtaggaaa ggcaatgtat gcccctccca tcagaggaca aattaagtgt
1561 tcatcaaaga ttacagggct gatattaaca agagatgggg gtaatagccc gaaccaaagc
1621 acagagatct tcagaccggg aggaggagat atgagggaca attggagaag tgaactatat
1681 aaatacaaag tagtaaaaat tgaaccatta ggggtagcac ccaccaaggc aaagagacga
1741 gtggtgcaga gagaaaaaag aacagtaata ggagctgtgt tccttgggtt cttgggagca
1801 gcaggaagca ctatgggcgc agcgtcaatg acgctgacgg tacaggctag acaattattg
1861 tctggtatag tgcaacagca gaacaatttg ctgaaggcta ttgaagcgca acaacatctg
1921 ttgcaactca cagtctgggg catcaagcag ctccaggcaa gagtcctggc tgtggaaaga
1981 tacctaaagg atcaacagct cctggggatt tggggttgct ctggaaaact catttgcacc
2041 actgctgtgc cttggaatac tagttggagt aataaatctc tgaatgagat ctggaacaac
2101 atgacctgga tggagtggga aagagaaatt cacaattaca caagcttaat atacacttta
2161 attgaagaat cgcaaaacca acaagaaaag aatgaacaag aattattgga attagataag
2221 tgggcaagtt tgtggaattg gtttgacata acaaaatggc tgtggtatat aaaaatattc
2281 ataatgatag taggaggctt ggtaggttta agaatagttt ttgctgtact ttctatagtg
2341 aatagagtta ggcagggata ctcaccatta tcatttcaga cccacttccc agccccgagg
2401 ggacccgaca ggcccgaagg aatcgaagaa gaaggtggag agagagacag agacagatcc
2461 ggacgattag tgaacggatt cttaacactt atctgggacg atctgcggag cctgtgcctc
2521 ttcagctacc accgcttgag agacttactc ttgattgtaa cgaagattgt gaaacttctg
2581 ggacgcaggg ggtgggaagc cctcaaatat tggtggaatc tcctgcagta ttggagacag
2641 gaactaaaga aaagtgctgt tagcttgttc aatgccatag ccatagcagt agctgagggg
2701 acagatagga ttatagaagt attacaaaga gtttatagag cttttatcca catacctaga
2761 agaataagac agggcttgga aaggattttg caataagatg gggggccagt ggtcaaaaag
2821 tagtctggtt ggatggcctg ctataaggga aagaatgaaa cgagctgagc cagcagcaga
2881 tggggtggga gcagcatctc gagacctgga aagacatgga gcactcacaa gtagcaatac
2941 agtacataat aatgctgcat gtgcctggct agaagcacaa gag
//
last modified: Tue May 31 10:56 2022