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LOCUS	    JN251835		    3021 bp    RNA     linear	VRL 12-SEP-2011
DEFINITION  HIV-1 isolate s6.18.9 from Sweden rev protein (rev) and tat protein
	    (tat) genes, partial cds; vpu protein (vpu) gene, complete cds;
	    nonfunctional env protein (env) gene, complete sequence; and nef
	    protein (nef) gene, partial cds
ACCESSION   JN251835
VERSION     JN251835.1 GI:346312502
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 3021)
            Show all sequences for reference 1
  AUTHORS   Skar,H., Gutenkunst,R.N., Wilbe Ramsay,K., Alaeus,A., Albert,J. and
	    Leitner,T.
  TITLE     Daily Sampling of an HIV-1 Patient with Slowly Progressing Disease
	    Displays Persistence of Multiple env Subpopulations Consistent with
	    Neutrality
  JOURNAL   PLoS ONE 6 (8), E21747 (2011)
  PUBMED    21829600
REFERENCE   2 (bases 1 to 3021)
            Show all sequences for reference 2
  AUTHORS   Leitner,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUL-2011) Theoretical Biology and Biophysics, Los
	    Alamos National Laboratory, MS K710, Los Alamos, NM 87545, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Sequence Name s6.18.9 Amplification
	    strategy limiting dilution PCR Culture method uncultured Drug naive
	    yes Patient health status asymptomatic Patient sex M Patient
	    progression LTNP Sample timepoint 18 Sample Date 19-Oct-98
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..3021
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="s6.18.9"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Sweden"
		     /collection_date="19-Oct-1998"
		     /note="subtype: B"
     gene	     <1..2671
		     /gene="rev"
     CDS	     join(<1..58,2388..2671)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AEO22306.1"
		     /db_xref="GI:346312504"
		     /translation="DSDEELLRTVRLIKFLYQSNPLPSPEGTRQARRNRRRRWRERQR
		     QIRTISERILNTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPA
		     VLETGTKEECC"
     gene	     <1..2478
		     /gene="tat"
     CDS	     join(<1..58,2388..2478)
		     /gene="tat"
		     /codon_start="3"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AEO22305.1"
		     /db_xref="GI:346312503"
		     /translation="QRRRAPPDSQTHQVSLSKQPTSQPRGDPTGPKESKKKVERETET
		     DPDD"
     gene	     75..320
		     /gene="vpu"
     CDS	     75..320
		     /gene="vpu"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="AEO22307.1"
		     /db_xref="GI:346312505"
		     /translation="MQSLHILAIVALVIAAIIAIVVWTIVLIEYRKILRQRKIDRLIE
		     RISERAEDSGNESEGDQEELSALVGMGHHAPWNIDDL"
     gene	     238..2804
		     /gene="env"
     misc_feature    238..2804
		     /gene="env"
		     /note="nonfunctional env protein due to mutation"
     gene	     2806..>3021
		     /gene="nef"
     CDS	     2806..>3021
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="AEO22308.1"
		     /db_xref="GI:346312506"
		     /translation="MGGQWSKSSPVGWPAIRERMKRAEPAADGVGAASRDLERHGALT
		     SSNTVHNNAACAWLEAQEEEEVGFPVRP"
BASE COUNT     1075 a	 499 c	  725 g    722 t
ORIGIN
       1 gacagcgacg aagagctcct ccggacagtc agactcatca agtttctcta tcaaagcagt 
      61 aagtagtaca tgtaatgcaa tctttacata tattagcaat agtagcatta gtaatagcag 
     121 caataatagc aatagtagtg tggaccatag tactcataga atatagaaaa atattaagac 
     181 aaaggaaaat agacaggtta attgaaagaa taagtgaaag agcagaagac agtggcaatg 
     241 aaagtgaggg agatcaggaa gagctctcag cacttgtggg gatggggcat catgctcctt 
     301 ggaatattga tgatctgtag tactgcagac aaattgtggg tcacagttta ttatggggta 
     361 cctgtgtgga aagaagcaac taccactcta ttttgtgcat cagatgctaa agcatatgat 
     421 acagaagtac ataatgtctg ggctacacat gcctgtgtac ccacagaccc caacccacaa 
     481 gaagtagtat tgggaaatgt gacagaaaat tttaacatgt ggaaaaataa catggtagaa 
     541 caaatgcatg aggatataat cagtttatgg gatcaaagct taaagccatg tgtaaaatta 
     601 accccactct gtgttacttt aaattgcact gacttgagaa atgctactaa tgccactaat 
     661 agtagcgagg gaacgatgga gggaggagaa atgaaaaatt gttctttcaa tatcaccaca 
     721 aacataagag acaagacgaa gaagaagaac gaatatgcac ttttttataa acttgatgta 
     781 ataccaatag ataatgataa tactaatgat aatactagct ataggttgat aaattgtaac 
     841 acctcagtca ttacacaggc ctgtccaaag gtatcctttg aaccaattcc catacattat 
     901 tgtgccccgg ctggttttgc gattctaaag tgtaatgata agaagttcaa tggatcagga 
     961 ccatgtaaaa atgtcagcac agtacaatgt acacatggaa ttaggccaac agtgtcaact 
    1021 caactgttat taaatggcag tctagcagaa gaagaggtag taattaggtc tgaaaatttc 
    1081 acgaataatg ctaaaatcat aatagtacag ctgaaggaat atgtagaaat taagtgtgca 
    1141 aggcccaaca ataatacaag aaaagggata catatgggac tagggaaaac actttatgca 
    1201 acaggagaaa taataggaaa tataagacaa gcacattgta acattagtag agcagactgg 
    1261 aataatactt tacaacagat agttataaaa ttaagagaac aatttaggaa taaaacaata 
    1321 atctttgatc aatcttcagg aggggaccca gaagttgtaa ggcacatgtt taattgtggg 
    1381 ggggaatttt tctactgtga ctcatcacaa ctgtttaata atacttgggt taatagtact 
    1441 agaaatgata gcactgaaga aaatagaaca ccactcacac tcccatgtaa aataaaacaa 
    1501 attataaaca tgtggcagga ggtaggaaaa gcaatgtatg cccctcccat cagaggacaa 
    1561 attaagtgtt catcaaagat tacagggctg atattaacaa gagatggtgg taatagcccg 
    1621 aaccaaagca cagagatctt cagaccggga ggaggagata tgagggacaa ttggagaagt 
    1681 gaactatata aatacaaagt agtaaaaatt gaaccattag gggtagcacc caccaaggca 
    1741 aagagacgag tggtgcagag agaaaaaaga acagtaatag gagctgtgtt ccttgggttc 
    1801 ttgggagcag caggaagcac tatgggcgca gcgtcaatga cgctgacggt acaggctaga 
    1861 caattattgt ctggtatagt gcaacagcag aacaatttgc tgaaggctat tgaggcgcaa 
    1921 caacatctgt tgcaactcac agtctggggc atcaagcagc tccaggcaag agtcctggct 
    1981 atgaaagata cctaaaggat caacagctcc tggggatttg gggttgctct ggaaaactca 
    2041 tttgcaccac tgctgtgcct tggaatacta gttggagtaa taaatctctg aatgagattt 
    2101 gggacaacat gacctggatg gagtgggaaa gagaaattca caattacaca agcttaatat 
    2161 acactttact tgaagaatcg cagaaccaac aagaaaagaa tgaacaagaa ttattggaat 
    2221 tagataagtg ggcaagtttg tggaattggt ttgacataac aaaatggctg tggtatataa 
    2281 aaatattcat aatgatagta ggaggtttgg taggtttaag aatagttttt gctgtacttt 
    2341 ctatagtgaa tagagttagg cagggatact caccattatc atttcagacc cacttcccag 
    2401 ccccgagggg acccgacagg cccgaaggaa tcgaagaaga aggtggagag agagacagag 
    2461 acagatccgg acgattagtg aacggattct taacacttat ctgggacgat ctgcggagcc 
    2521 tgtgcctctt cagctaccac cgcttgagag acttactctt gattgtaacg aagattgtgg 
    2581 aacttctggg acgcaggggg tgggaagccc tcaaatattg gtggaatctc ctgcagtatt 
    2641 ggagacagga actaaagaag agtgctgtta gcttgttcaa tgccatagcc atagcagtag 
    2701 ctgaggggac agataggatt atagaagtat tacaaagagt ttatagagct tttatccaca 
    2761 tacctagaag aataagacag ggcttggaaa ggattttgca ataagatggg tggtcagtgg 
    2821 tcaaaaagta gtccggttgg atggcctgct ataagggaaa gaatgaaacg agctgagcca 
    2881 gcagcagatg gggtgggagc agcatctcga gacctggaaa gacatggagc actcacaagt 
    2941 agcaatacag tacataataa tgctgcatgt gcctggctag aagcacaaga ggaggaagag 
    3001 gtgggttttc cagtcagacc t
//
last modified: Tue May 31 10:56 2022


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