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LOCUS JN251835 3021 bp RNA linear VRL 12-SEP-2011
DEFINITION HIV-1 isolate s6.18.9 from Sweden rev protein (rev) and tat protein
(tat) genes, partial cds; vpu protein (vpu) gene, complete cds;
nonfunctional env protein (env) gene, complete sequence; and nef
protein (nef) gene, partial cds
ACCESSION JN251835
VERSION JN251835.1 GI:346312502
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 3021)
Show all sequences for reference 1
AUTHORS Skar,H., Gutenkunst,R.N., Wilbe Ramsay,K., Alaeus,A., Albert,J. and
Leitner,T.
TITLE Daily Sampling of an HIV-1 Patient with Slowly Progressing Disease
Displays Persistence of Multiple env Subpopulations Consistent with
Neutrality
JOURNAL PLoS ONE 6 (8), E21747 (2011)
PUBMED 21829600
REFERENCE 2 (bases 1 to 3021)
Show all sequences for reference 2
AUTHORS Leitner,T.
TITLE Direct Submission
JOURNAL Submitted (13-JUL-2011) Theoretical Biology and Biophysics, Los
Alamos National Laboratory, MS K710, Los Alamos, NM 87545, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Sequence Name s6.18.9 Amplification
strategy limiting dilution PCR Culture method uncultured Drug naive
yes Patient health status asymptomatic Patient sex M Patient
progression LTNP Sample timepoint 18 Sample Date 19-Oct-98
##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..3021
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="s6.18.9"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Sweden"
/collection_date="19-Oct-1998"
/note="subtype: B"
gene <1..2671
/gene="rev"
CDS join(<1..58,2388..2671)
/gene="rev"
/codon_start="1"
/transl_table="1"
/product="rev protein"
/protein_id="AEO22306.1"
/db_xref="GI:346312504"
/translation="DSDEELLRTVRLIKFLYQSNPLPSPEGTRQARRNRRRRWRERQR
QIRTISERILNTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPA
VLETGTKEECC"
gene <1..2478
/gene="tat"
CDS join(<1..58,2388..2478)
/gene="tat"
/codon_start="3"
/transl_table="1"
/product="tat protein"
/protein_id="AEO22305.1"
/db_xref="GI:346312503"
/translation="QRRRAPPDSQTHQVSLSKQPTSQPRGDPTGPKESKKKVERETET
DPDD"
gene 75..320
/gene="vpu"
CDS 75..320
/gene="vpu"
/codon_start="1"
/transl_table="1"
/product="vpu protein"
/protein_id="AEO22307.1"
/db_xref="GI:346312505"
/translation="MQSLHILAIVALVIAAIIAIVVWTIVLIEYRKILRQRKIDRLIE
RISERAEDSGNESEGDQEELSALVGMGHHAPWNIDDL"
gene 238..2804
/gene="env"
misc_feature 238..2804
/gene="env"
/note="nonfunctional env protein due to mutation"
gene 2806..>3021
/gene="nef"
CDS 2806..>3021
/gene="nef"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="AEO22308.1"
/db_xref="GI:346312506"
/translation="MGGQWSKSSPVGWPAIRERMKRAEPAADGVGAASRDLERHGALT
SSNTVHNNAACAWLEAQEEEEVGFPVRP"
BASE COUNT 1075 a 499 c 725 g 722 t
ORIGIN
1 gacagcgacg aagagctcct ccggacagtc agactcatca agtttctcta tcaaagcagt
61 aagtagtaca tgtaatgcaa tctttacata tattagcaat agtagcatta gtaatagcag
121 caataatagc aatagtagtg tggaccatag tactcataga atatagaaaa atattaagac
181 aaaggaaaat agacaggtta attgaaagaa taagtgaaag agcagaagac agtggcaatg
241 aaagtgaggg agatcaggaa gagctctcag cacttgtggg gatggggcat catgctcctt
301 ggaatattga tgatctgtag tactgcagac aaattgtggg tcacagttta ttatggggta
361 cctgtgtgga aagaagcaac taccactcta ttttgtgcat cagatgctaa agcatatgat
421 acagaagtac ataatgtctg ggctacacat gcctgtgtac ccacagaccc caacccacaa
481 gaagtagtat tgggaaatgt gacagaaaat tttaacatgt ggaaaaataa catggtagaa
541 caaatgcatg aggatataat cagtttatgg gatcaaagct taaagccatg tgtaaaatta
601 accccactct gtgttacttt aaattgcact gacttgagaa atgctactaa tgccactaat
661 agtagcgagg gaacgatgga gggaggagaa atgaaaaatt gttctttcaa tatcaccaca
721 aacataagag acaagacgaa gaagaagaac gaatatgcac ttttttataa acttgatgta
781 ataccaatag ataatgataa tactaatgat aatactagct ataggttgat aaattgtaac
841 acctcagtca ttacacaggc ctgtccaaag gtatcctttg aaccaattcc catacattat
901 tgtgccccgg ctggttttgc gattctaaag tgtaatgata agaagttcaa tggatcagga
961 ccatgtaaaa atgtcagcac agtacaatgt acacatggaa ttaggccaac agtgtcaact
1021 caactgttat taaatggcag tctagcagaa gaagaggtag taattaggtc tgaaaatttc
1081 acgaataatg ctaaaatcat aatagtacag ctgaaggaat atgtagaaat taagtgtgca
1141 aggcccaaca ataatacaag aaaagggata catatgggac tagggaaaac actttatgca
1201 acaggagaaa taataggaaa tataagacaa gcacattgta acattagtag agcagactgg
1261 aataatactt tacaacagat agttataaaa ttaagagaac aatttaggaa taaaacaata
1321 atctttgatc aatcttcagg aggggaccca gaagttgtaa ggcacatgtt taattgtggg
1381 ggggaatttt tctactgtga ctcatcacaa ctgtttaata atacttgggt taatagtact
1441 agaaatgata gcactgaaga aaatagaaca ccactcacac tcccatgtaa aataaaacaa
1501 attataaaca tgtggcagga ggtaggaaaa gcaatgtatg cccctcccat cagaggacaa
1561 attaagtgtt catcaaagat tacagggctg atattaacaa gagatggtgg taatagcccg
1621 aaccaaagca cagagatctt cagaccggga ggaggagata tgagggacaa ttggagaagt
1681 gaactatata aatacaaagt agtaaaaatt gaaccattag gggtagcacc caccaaggca
1741 aagagacgag tggtgcagag agaaaaaaga acagtaatag gagctgtgtt ccttgggttc
1801 ttgggagcag caggaagcac tatgggcgca gcgtcaatga cgctgacggt acaggctaga
1861 caattattgt ctggtatagt gcaacagcag aacaatttgc tgaaggctat tgaggcgcaa
1921 caacatctgt tgcaactcac agtctggggc atcaagcagc tccaggcaag agtcctggct
1981 atgaaagata cctaaaggat caacagctcc tggggatttg gggttgctct ggaaaactca
2041 tttgcaccac tgctgtgcct tggaatacta gttggagtaa taaatctctg aatgagattt
2101 gggacaacat gacctggatg gagtgggaaa gagaaattca caattacaca agcttaatat
2161 acactttact tgaagaatcg cagaaccaac aagaaaagaa tgaacaagaa ttattggaat
2221 tagataagtg ggcaagtttg tggaattggt ttgacataac aaaatggctg tggtatataa
2281 aaatattcat aatgatagta ggaggtttgg taggtttaag aatagttttt gctgtacttt
2341 ctatagtgaa tagagttagg cagggatact caccattatc atttcagacc cacttcccag
2401 ccccgagggg acccgacagg cccgaaggaa tcgaagaaga aggtggagag agagacagag
2461 acagatccgg acgattagtg aacggattct taacacttat ctgggacgat ctgcggagcc
2521 tgtgcctctt cagctaccac cgcttgagag acttactctt gattgtaacg aagattgtgg
2581 aacttctggg acgcaggggg tgggaagccc tcaaatattg gtggaatctc ctgcagtatt
2641 ggagacagga actaaagaag agtgctgtta gcttgttcaa tgccatagcc atagcagtag
2701 ctgaggggac agataggatt atagaagtat tacaaagagt ttatagagct tttatccaca
2761 tacctagaag aataagacag ggcttggaaa ggattttgca ataagatggg tggtcagtgg
2821 tcaaaaagta gtccggttgg atggcctgct ataagggaaa gaatgaaacg agctgagcca
2881 gcagcagatg gggtgggagc agcatctcga gacctggaaa gacatggagc actcacaagt
2941 agcaatacag tacataataa tgctgcatgt gcctggctag aagcacaaga ggaggaagag
3001 gtgggttttc cagtcagacc t
//
last modified: Tue May 31 10:56 2022