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LOCUS JN251832 3022 bp RNA linear VRL 12-SEP-2011
DEFINITION HIV-1 isolate s6.1.8 from Sweden rev protein (rev) and tat protein
(tat) genes, partial cds; vpu protein (vpu) and envelope
glycoprotein (env) genes, complete cds; and nef protein (nef) gene,
partial cds
ACCESSION JN251832
VERSION JN251832.1 GI:346312484
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 3022)
Show all sequences for reference 1
AUTHORS Skar,H., Gutenkunst,R.N., Wilbe Ramsay,K., Alaeus,A., Albert,J. and
Leitner,T.
TITLE Daily Sampling of an HIV-1 Patient with Slowly Progressing Disease
Displays Persistence of Multiple env Subpopulations Consistent with
Neutrality
JOURNAL PLoS ONE 6 (8), E21747 (2011)
PUBMED 21829600
REFERENCE 2 (bases 1 to 3022)
Show all sequences for reference 2
AUTHORS Leitner,T.
TITLE Direct Submission
JOURNAL Submitted (13-JUL-2011) Theoretical Biology and Biophysics, Los
Alamos National Laboratory, MS K710, Los Alamos, NM 87545, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Sequence Name s6.1.8 Amplification
strategy limiting dilution PCR Culture method uncultured Drug naive
yes Patient health status asymptomatic Patient sex M Patient
progression LTNP Sample timepoint 1 Sample Date 2-Oct-98
##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..3022
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="s6.1.8"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Sweden"
/collection_date="02-Oct-1998"
/note="subtype: B"
gene <1..2672
/gene="rev"
CDS join(<1..58,2389..2672)
/gene="rev"
/codon_start="1"
/transl_table="1"
/product="rev protein"
/protein_id="AEO22291.1"
/db_xref="GI:346312486"
/translation="DSDEELLRTVRLIKFLYQSNPLPSPEGTRQARRNRRRRWRERQR
QIRTISERILNTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPA
VLETGTKEECC"
gene <1..2479
/gene="tat"
CDS join(<1..58,2389..2479)
/gene="tat"
/codon_start="3"
/transl_table="1"
/product="tat protein"
/protein_id="AEO22290.1"
/db_xref="GI:346312485"
/translation="QRRRAPPDSQTHQVSLSKQPTSQPRGDPTSPKESKKKVERETET
DPDD"
gene 75..320
/gene="vpu"
CDS 75..320
/gene="vpu"
/codon_start="1"
/transl_table="1"
/product="vpu protein"
/protein_id="AEO22292.1"
/db_xref="GI:346312487"
/translation="MQSLHILAIVALVIAAIIAIVVWTIVLIEYRKILRQRKIDRLIE
RISERAEDSGNESEGDQEELSALVGMGHHAPWNIDDL"
gene 238..2805
/gene="env"
CDS 238..2805
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AEO22293.1"
/db_xref="GI:346312488"
/translation="MKVREIRKSSQHLWGWGIMLLGILMICSTADKLWVTVYYGVPVW
KEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNNMVEQ
MHEDIISLWDQSLKSCVKLTPLCVTLNCTDLRNATNATNSSEGTMEGGEMKNCSFNIT
TNIRDKTKKKNEYALFYKIDVIPIDNDNTNDNTSYRLINCNTSVITQACPKVSFEPIP
IHYCAPAGFAILKCNDKKFNGSGPCKNVSTVQCTHGIRPTVSTQLLLNGSLAEEEVVI
RSENFTNNAKIIIVQLKEYVEIKCARPNNNTRKGIHMGLGKTLYATGEIIGNIRQAHC
NISRADWNNTLQQIVIKLREQFRNKTIVFDQSSGGDPEVVRHMFNCGGEFFYCDSSQL
FNNTWVNSTRNDSTEENRTPLTLPCKIKQIINMWQEVGKAMYAPPIRGQIKCSSKITG
LILTRDGGNSPNQSTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQR
EKRTVIGAVFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLKAIEAQQHLLQ
LTVWGIKQLQARVLAMERYLKDQQLLGIWGCSGKLICTTAVPWNTSWSNKSLNEIWDN
MTWMEWEREIHNYTSLIYTLLEESQNQQEKNEQELLELDKWASLWNWFDITKWLWYIK
IFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHFPAPRGPDKPEGIEEEGGERD
RDRSGRLVNGFLTLIWDDLRSLCLFSYHRLRDLLLIVTKIVELLGRRGWEALKYWWNL
LQYWRQELKKSAVSLFNAIAIAVAEGTDRIIEVLQRVYIAFIHIPRRIRQGLERILQ"
gene 2807..>3022
/gene="nef"
CDS 2807..>3022
/gene="nef"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="AEO22294.1"
/db_xref="GI:346312489"
/translation="MGGQWSKSSPVGWPAIRERMKRAEPAADGVGAASRDLERHGALT
SSNTVHNNAACAWLEAQEEEEVGFPVRP"
BASE COUNT 1075 a 499 c 725 g 723 t
ORIGIN
1 gacagcgacg aagagctcct ccggacagtc agactcatca agtttctcta tcaaagcagt
61 aagtagtaca tgtaatgcaa tctttacata tattagcaat agtagcatta gtaatagcag
121 caataatagc aatagtagtg tggaccatag tactcataga atatagaaaa atattaagac
181 aaaggaaaat agacaggtta attgaaagaa taagtgaaag agcagaagac agtggcaatg
241 aaagtgaggg agatcaggaa gagctctcag cacttgtggg gatggggcat catgctcctt
301 ggaatattga tgatctgtag tactgcagac aaattgtggg tcacagttta ttatggggta
361 cctgtgtgga aagaagcaac taccactcta ttttgtgcat cagatgctaa agcatatgat
421 acagaagtac ataatgtctg ggctacacat gcctgtgtac ccacagaccc caacccacaa
481 gaagtagtat tgggaaatgt gacagaaaat tttaacatgt ggaaaaataa catggtagaa
541 caaatgcatg aggatataat cagtttatgg gatcaaagct taaagtcatg tgtaaaatta
601 accccactct gtgttacttt aaattgcact gacttgagaa atgctactaa tgccactaat
661 agtagcgagg gaacgatgga gggaggagaa atgaaaaatt gttctttcaa tatcaccaca
721 aacataagag acaagacgaa gaagaagaac gaatatgcac ttttttataa aattgatgta
781 ataccaatag ataatgataa tactaatgat aatactagct ataggttgat aaattgtaac
841 acctcagtca ttacacaggc ctgtccaaag gtatcctttg aaccaattcc catacattat
901 tgtgccccgg ctggttttgc gattctaaag tgtaatgata agaagttcaa tggatcagga
961 ccatgtaaaa atgtcagcac agtacaatgt acacatggaa ttaggccaac agtgtcaact
1021 caactgttat taaatggcag tctagcagaa gaagaggtag taattaggtc tgaaaatttc
1081 acgaataatg ctaaaatcat aatagtacag ctgaaggaat atgtagaaat taagtgtgca
1141 aggcccaaca ataatacaag aaaagggata catatgggac tagggaaaac actttatgca
1201 acaggagaaa taataggaaa tataagacaa gcacattgta acattagtag agcagactgg
1261 aataatactt tacaacagat agttataaaa ttaagagaac aatttaggaa taaaacaata
1321 gtctttgatc aatcctcagg aggggaccca gaagttgtaa ggcacatgtt taattgtggg
1381 ggggaatttt tctactgtga ctcatcacaa ctgtttaata atacttgggt taatagtact
1441 agaaatgata gcactgaaga aaatagaaca ccactcacac tcccatgtaa aataaaacaa
1501 attataaaca tgtggcagga ggtaggaaaa gcaatgtatg cccctcccat cagaggacaa
1561 attaagtgtt catcaaagat tacagggctg atattaacaa gagatggtgg taatagcccg
1621 aaccaaagca cagagatctt cagaccggga ggaggagata tgagggacaa ttggagaagt
1681 gaactatata aatacaaagt agtaaaaatt gaaccattag gggtagcacc caccaaggca
1741 aagagacgag tggtgcagag agaaaaaaga acagtaatag gagctgtgtt ccttgggttc
1801 ttgggagcag caggaagcac tatgggcgca gcgtcaatga cgctgacggt acaggctaga
1861 caattattgt ctggtatagt gcaacagcag aacaatttgc tgaaggctat tgaggcgcaa
1921 caacatctgt tgcaactcac agtctggggc atcaagcagc tccaggcaag agtcctggct
1981 atggaaagat acctaaagga tcaacagctc ctggggattt ggggttgctc tggaaaactc
2041 atttgcacca ctgctgtgcc ttggaatact agttggagta ataaatctct gaatgagatt
2101 tgggacaaca tgacctggat ggagtgggaa agagaaattc acaattacac aagcttaata
2161 tacactttac ttgaagaatc gcagaaccaa caagaaaaga atgaacaaga attattggaa
2221 ttagataagt gggcaagttt gtggaattgg tttgacataa caaaatggct gtggtatata
2281 aaaatattca taatgatagt aggaggtttg gtaggtttaa gaatagtttt tgctgtcctt
2341 tctatagtga atagagttag gcagggatac tcaccattat catttcagac ccacttccca
2401 gccccgaggg gacccgacaa gcccgaagga atcgaagaag aaggtggaga gagagacaga
2461 gacagatccg gacgattagt gaacggattc ttaacactta tctgggacga tctgcggagc
2521 ctgtgcctct tcagctacca ccgcttgaga gacttactct tgattgtaac gaagattgtg
2581 gaacttctgg gacgcagggg gtgggaagcc ctcaaatatt ggtggaatct cctgcagtat
2641 tggagacagg aactaaagaa gagtgctgtt agcttgttca atgccatagc catagcagta
2701 gctgagggga cagataggat tatagaagta ttacaaagag tttatatagc ttttatccac
2761 atacctagaa gaataagaca gggcttggaa aggattttgc aataagatgg gtggtcagtg
2821 gtcaaaaagt agtccggttg gatggcctgc tataagggaa agaatgaaac gagctgagcc
2881 agcagcagat ggggtgggag cagcatctcg agacctggaa agacatggag cactcacaag
2941 tagcaataca gtacataata atgctgcatg tgcctggcta gaagcacaag aggaggaaga
3001 ggtgggtttt ccagtcagac ct
//
last modified: Tue May 31 10:56 2022