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LOCUS	    JN251832		    3022 bp    RNA     linear	VRL 12-SEP-2011
DEFINITION  HIV-1 isolate s6.1.8 from Sweden rev protein (rev) and tat protein
	    (tat) genes, partial cds; vpu protein (vpu) and envelope
	    glycoprotein (env) genes, complete cds; and nef protein (nef) gene,
	    partial cds
ACCESSION   JN251832
VERSION     JN251832.1 GI:346312484
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 3022)
            Show all sequences for reference 1
  AUTHORS   Skar,H., Gutenkunst,R.N., Wilbe Ramsay,K., Alaeus,A., Albert,J. and
	    Leitner,T.
  TITLE     Daily Sampling of an HIV-1 Patient with Slowly Progressing Disease
	    Displays Persistence of Multiple env Subpopulations Consistent with
	    Neutrality
  JOURNAL   PLoS ONE 6 (8), E21747 (2011)
  PUBMED    21829600
REFERENCE   2 (bases 1 to 3022)
            Show all sequences for reference 2
  AUTHORS   Leitner,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUL-2011) Theoretical Biology and Biophysics, Los
	    Alamos National Laboratory, MS K710, Los Alamos, NM 87545, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Sequence Name s6.1.8 Amplification
	    strategy limiting dilution PCR Culture method uncultured Drug naive
	    yes Patient health status asymptomatic Patient sex M Patient
	    progression LTNP Sample timepoint 1 Sample Date 2-Oct-98
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..3022
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="s6.1.8"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Sweden"
		     /collection_date="02-Oct-1998"
		     /note="subtype: B"
     gene	     <1..2672
		     /gene="rev"
     CDS	     join(<1..58,2389..2672)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AEO22291.1"
		     /db_xref="GI:346312486"
		     /translation="DSDEELLRTVRLIKFLYQSNPLPSPEGTRQARRNRRRRWRERQR
		     QIRTISERILNTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPA
		     VLETGTKEECC"
     gene	     <1..2479
		     /gene="tat"
     CDS	     join(<1..58,2389..2479)
		     /gene="tat"
		     /codon_start="3"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AEO22290.1"
		     /db_xref="GI:346312485"
		     /translation="QRRRAPPDSQTHQVSLSKQPTSQPRGDPTSPKESKKKVERETET
		     DPDD"
     gene	     75..320
		     /gene="vpu"
     CDS	     75..320
		     /gene="vpu"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="AEO22292.1"
		     /db_xref="GI:346312487"
		     /translation="MQSLHILAIVALVIAAIIAIVVWTIVLIEYRKILRQRKIDRLIE
		     RISERAEDSGNESEGDQEELSALVGMGHHAPWNIDDL"
     gene	     238..2805
		     /gene="env"
     CDS	     238..2805
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AEO22293.1"
		     /db_xref="GI:346312488"
		     /translation="MKVREIRKSSQHLWGWGIMLLGILMICSTADKLWVTVYYGVPVW
		     KEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNNMVEQ
		     MHEDIISLWDQSLKSCVKLTPLCVTLNCTDLRNATNATNSSEGTMEGGEMKNCSFNIT
		     TNIRDKTKKKNEYALFYKIDVIPIDNDNTNDNTSYRLINCNTSVITQACPKVSFEPIP
		     IHYCAPAGFAILKCNDKKFNGSGPCKNVSTVQCTHGIRPTVSTQLLLNGSLAEEEVVI
		     RSENFTNNAKIIIVQLKEYVEIKCARPNNNTRKGIHMGLGKTLYATGEIIGNIRQAHC
		     NISRADWNNTLQQIVIKLREQFRNKTIVFDQSSGGDPEVVRHMFNCGGEFFYCDSSQL
		     FNNTWVNSTRNDSTEENRTPLTLPCKIKQIINMWQEVGKAMYAPPIRGQIKCSSKITG
		     LILTRDGGNSPNQSTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQR
		     EKRTVIGAVFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLKAIEAQQHLLQ
		     LTVWGIKQLQARVLAMERYLKDQQLLGIWGCSGKLICTTAVPWNTSWSNKSLNEIWDN
		     MTWMEWEREIHNYTSLIYTLLEESQNQQEKNEQELLELDKWASLWNWFDITKWLWYIK
		     IFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHFPAPRGPDKPEGIEEEGGERD
		     RDRSGRLVNGFLTLIWDDLRSLCLFSYHRLRDLLLIVTKIVELLGRRGWEALKYWWNL
		     LQYWRQELKKSAVSLFNAIAIAVAEGTDRIIEVLQRVYIAFIHIPRRIRQGLERILQ"
     gene	     2807..>3022
		     /gene="nef"
     CDS	     2807..>3022
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="AEO22294.1"
		     /db_xref="GI:346312489"
		     /translation="MGGQWSKSSPVGWPAIRERMKRAEPAADGVGAASRDLERHGALT
		     SSNTVHNNAACAWLEAQEEEEVGFPVRP"
BASE COUNT     1075 a	 499 c	  725 g    723 t
ORIGIN
       1 gacagcgacg aagagctcct ccggacagtc agactcatca agtttctcta tcaaagcagt 
      61 aagtagtaca tgtaatgcaa tctttacata tattagcaat agtagcatta gtaatagcag 
     121 caataatagc aatagtagtg tggaccatag tactcataga atatagaaaa atattaagac 
     181 aaaggaaaat agacaggtta attgaaagaa taagtgaaag agcagaagac agtggcaatg 
     241 aaagtgaggg agatcaggaa gagctctcag cacttgtggg gatggggcat catgctcctt 
     301 ggaatattga tgatctgtag tactgcagac aaattgtggg tcacagttta ttatggggta 
     361 cctgtgtgga aagaagcaac taccactcta ttttgtgcat cagatgctaa agcatatgat 
     421 acagaagtac ataatgtctg ggctacacat gcctgtgtac ccacagaccc caacccacaa 
     481 gaagtagtat tgggaaatgt gacagaaaat tttaacatgt ggaaaaataa catggtagaa 
     541 caaatgcatg aggatataat cagtttatgg gatcaaagct taaagtcatg tgtaaaatta 
     601 accccactct gtgttacttt aaattgcact gacttgagaa atgctactaa tgccactaat 
     661 agtagcgagg gaacgatgga gggaggagaa atgaaaaatt gttctttcaa tatcaccaca 
     721 aacataagag acaagacgaa gaagaagaac gaatatgcac ttttttataa aattgatgta 
     781 ataccaatag ataatgataa tactaatgat aatactagct ataggttgat aaattgtaac 
     841 acctcagtca ttacacaggc ctgtccaaag gtatcctttg aaccaattcc catacattat 
     901 tgtgccccgg ctggttttgc gattctaaag tgtaatgata agaagttcaa tggatcagga 
     961 ccatgtaaaa atgtcagcac agtacaatgt acacatggaa ttaggccaac agtgtcaact 
    1021 caactgttat taaatggcag tctagcagaa gaagaggtag taattaggtc tgaaaatttc 
    1081 acgaataatg ctaaaatcat aatagtacag ctgaaggaat atgtagaaat taagtgtgca 
    1141 aggcccaaca ataatacaag aaaagggata catatgggac tagggaaaac actttatgca 
    1201 acaggagaaa taataggaaa tataagacaa gcacattgta acattagtag agcagactgg 
    1261 aataatactt tacaacagat agttataaaa ttaagagaac aatttaggaa taaaacaata 
    1321 gtctttgatc aatcctcagg aggggaccca gaagttgtaa ggcacatgtt taattgtggg 
    1381 ggggaatttt tctactgtga ctcatcacaa ctgtttaata atacttgggt taatagtact 
    1441 agaaatgata gcactgaaga aaatagaaca ccactcacac tcccatgtaa aataaaacaa 
    1501 attataaaca tgtggcagga ggtaggaaaa gcaatgtatg cccctcccat cagaggacaa 
    1561 attaagtgtt catcaaagat tacagggctg atattaacaa gagatggtgg taatagcccg 
    1621 aaccaaagca cagagatctt cagaccggga ggaggagata tgagggacaa ttggagaagt 
    1681 gaactatata aatacaaagt agtaaaaatt gaaccattag gggtagcacc caccaaggca 
    1741 aagagacgag tggtgcagag agaaaaaaga acagtaatag gagctgtgtt ccttgggttc 
    1801 ttgggagcag caggaagcac tatgggcgca gcgtcaatga cgctgacggt acaggctaga 
    1861 caattattgt ctggtatagt gcaacagcag aacaatttgc tgaaggctat tgaggcgcaa 
    1921 caacatctgt tgcaactcac agtctggggc atcaagcagc tccaggcaag agtcctggct 
    1981 atggaaagat acctaaagga tcaacagctc ctggggattt ggggttgctc tggaaaactc 
    2041 atttgcacca ctgctgtgcc ttggaatact agttggagta ataaatctct gaatgagatt 
    2101 tgggacaaca tgacctggat ggagtgggaa agagaaattc acaattacac aagcttaata 
    2161 tacactttac ttgaagaatc gcagaaccaa caagaaaaga atgaacaaga attattggaa 
    2221 ttagataagt gggcaagttt gtggaattgg tttgacataa caaaatggct gtggtatata 
    2281 aaaatattca taatgatagt aggaggtttg gtaggtttaa gaatagtttt tgctgtcctt 
    2341 tctatagtga atagagttag gcagggatac tcaccattat catttcagac ccacttccca 
    2401 gccccgaggg gacccgacaa gcccgaagga atcgaagaag aaggtggaga gagagacaga 
    2461 gacagatccg gacgattagt gaacggattc ttaacactta tctgggacga tctgcggagc 
    2521 ctgtgcctct tcagctacca ccgcttgaga gacttactct tgattgtaac gaagattgtg 
    2581 gaacttctgg gacgcagggg gtgggaagcc ctcaaatatt ggtggaatct cctgcagtat 
    2641 tggagacagg aactaaagaa gagtgctgtt agcttgttca atgccatagc catagcagta 
    2701 gctgagggga cagataggat tatagaagta ttacaaagag tttatatagc ttttatccac 
    2761 atacctagaa gaataagaca gggcttggaa aggattttgc aataagatgg gtggtcagtg 
    2821 gtcaaaaagt agtccggttg gatggcctgc tataagggaa agaatgaaac gagctgagcc 
    2881 agcagcagat ggggtgggag cagcatctcg agacctggaa agacatggag cactcacaag 
    2941 tagcaataca gtacataata atgctgcatg tgcctggcta gaagcacaag aggaggaaga 
    3001 ggtgggtttt ccagtcagac ct
//
last modified: Tue May 31 10:56 2022


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