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LOCUS	    JN247068		    1302 bp    RNA     linear	VRL 26-OCT-2011
DEFINITION  HIV-1 isolate 052-1707-control from Malawi pol protein (pol) gene,
	    partial cds
ACCESSION   JN247068
VERSION     JN247068.1 GI:353560527
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Eshleman,S.H., Hudelson,S.E., Redd,A.D., Wang,L., Debes,R.,
	    Chen,Y.Q., Martens,C.A., Ricklefs,S.M., Selig,E.J., Porcella,S.F.,
	    Munshaw,S., Ray,S.C., Piwowar-Manning,E., McCauley,M.,
	    Hosseinipour,M.C., Kumwenda,J., Hakim,J.G., Chariyalertsak,S., de
	    Bruyn,G., Grinsztejn,B., Kumarasamy,N., Makhema,J., Mayer,K.H.,
	    Pilotto,J., Santos,B.R., Quinn,T.C., Cohen,M.S. and Hughes,J.P.
  TITLE     Analysis of Genetic Linkage of HIV From Couples Enrolled in the HIV
	    Prevention Trials Network 052 Trial.
  JOURNAL   J. Infect. Dis.. 204(12); 1918-26 (2011)
  PUBMED    21990420
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Eshleman,S.H., Hudelson,S.E., Redd,A.D., Wang,L., Debes,R.,
	    Chen,Y.Q., Martens,C.A., Ricklefs,S.M., Selig,E.J., Porcella,S.F.,
	    Mushaw,S., Ray,S.C., Piwowar-Manning,E., McCauley,M.,
	    Hosseinipour,M.C., Kumwenda,J., Hakim,J.G., Chariyalertsak,S., de
	    Bruyn,G., Grinsztejn,B., Kumarasamy,N., Makhema,J., Mayer,K.H.,
	    Pilotto,J., Santos,B.R., Quinn,T.C., Cohen,M.S. and Hughes,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUL-2011) Pathology, The Johns Hopkins Medical
	    Institutions, 720 Rutland Ave Ross 646, Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="052-1707-control"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Malawi"
		     /collection_date="2009"
		     /note="subtype: C"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AER11951.1"
		     /db_xref="GI:353560528"
		     /translation="PQITLWQRPLVSIRVGGQIREALLDTGADDTVLEDIDLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMTKILEPFRAKNPE
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDXWTVQTIQLPEKDXWTVNDIQKLVGKLNWASQIYSGIKVKQLCKLLRGXKALTDIV
		     PLTEEAELELAENREILKEQVHGVYYDPSKDLIAEIQKQGHD"
BASE COUNT	505 a	 213 c	  282 g    291 t     11 other
ORIGIN
       1 cctcaaatca ctctttggca gcgacccctt gtctcaataa gagtaggggg ccagataagg 
      61 gaggctctct tagacacagg agcagatgat acagtattag aagacataga tttaccagga 
     121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caaatactta tagaaatttg tggaaaaaag gctataggta cagtattagt agggcctacg 
     241 cctgtcaaca taattggaag gaatctgttg actcagcttg gctgtacact aaattttcca 
     301 attagtccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtc 
     361 aaacaatggc cgttgacaga agaaaaaata aaagcattaa cagcaatttg tgaagaaatg 
     421 gagaaggaag gaaaaattac aaaaattggg cctgagaatc catataacac tccagtattt 
     481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaacttaat 
     541 aaaagaactc aagacttttg ggaggttcaa ttaggaatac cacacccagc agggttaaaa 
     601 aagaaaaaat cagtgacagt actggatgtg ggggatgcat atttttcagt tcccttagat 
     661 gaaagcttta gaaaatatac tgcattcacc ataccgagca taaataatga aacaccaggg 
     721 attagatatc aatataatgt gctrccacag ggatggaaag gatcaccatc aatattccag 
     781 agtagcatga caaaaatctt agagcccttt agagcaaaaa atccagaaat agtcatytat 
     841 caatatatgg atgacytgta tgtaggrtct gacttagaaa tagggcaaca tagrgcaaaa 
     901 atagaggagt taagagaaca tctattaagg tggggattta ccacaccaga caagaaacat 
     961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacar atggacagta 
    1021 cagactatac agctgccaga aaaggatawc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattaa actgggcaag tcagatttac tcagggatca argtaaagca actttgtaaa 
    1141 ctccttaggg ggrcyaaagc actaacagac atagtaccac tractgaaga agcagaatta 
    1201 gaattggcag agaacaggga aattctaaaa gagcaagtac atggagtata ttatgaccca 
    1261 tcaaaagact tgatagcaga aatacagaaa cagggtcatg ac
//
last modified: Tue May 31 10:56 2022


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