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LOCUS JN247068 1302 bp RNA linear VRL 26-OCT-2011
DEFINITION HIV-1 isolate 052-1707-control from Malawi pol protein (pol) gene,
partial cds
ACCESSION JN247068
VERSION JN247068.1 GI:353560527
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Eshleman,S.H., Hudelson,S.E., Redd,A.D., Wang,L., Debes,R.,
Chen,Y.Q., Martens,C.A., Ricklefs,S.M., Selig,E.J., Porcella,S.F.,
Munshaw,S., Ray,S.C., Piwowar-Manning,E., McCauley,M.,
Hosseinipour,M.C., Kumwenda,J., Hakim,J.G., Chariyalertsak,S., de
Bruyn,G., Grinsztejn,B., Kumarasamy,N., Makhema,J., Mayer,K.H.,
Pilotto,J., Santos,B.R., Quinn,T.C., Cohen,M.S. and Hughes,J.P.
TITLE Analysis of Genetic Linkage of HIV From Couples Enrolled in the HIV
Prevention Trials Network 052 Trial.
JOURNAL J. Infect. Dis.. 204(12); 1918-26 (2011)
PUBMED 21990420
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Eshleman,S.H., Hudelson,S.E., Redd,A.D., Wang,L., Debes,R.,
Chen,Y.Q., Martens,C.A., Ricklefs,S.M., Selig,E.J., Porcella,S.F.,
Mushaw,S., Ray,S.C., Piwowar-Manning,E., McCauley,M.,
Hosseinipour,M.C., Kumwenda,J., Hakim,J.G., Chariyalertsak,S., de
Bruyn,G., Grinsztejn,B., Kumarasamy,N., Makhema,J., Mayer,K.H.,
Pilotto,J., Santos,B.R., Quinn,T.C., Cohen,M.S. and Hughes,J.P.
TITLE Direct Submission
JOURNAL Submitted (13-JUL-2011) Pathology, The Johns Hopkins Medical
Institutions, 720 Rutland Ave Ross 646, Baltimore, MD 21205, USA
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="052-1707-control"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Malawi"
/collection_date="2009"
/note="subtype: C"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AER11951.1"
/db_xref="GI:353560528"
/translation="PQITLWQRPLVSIRVGGQIREALLDTGADDTVLEDIDLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMTKILEPFRAKNPE
IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDXWTVQTIQLPEKDXWTVNDIQKLVGKLNWASQIYSGIKVKQLCKLLRGXKALTDIV
PLTEEAELELAENREILKEQVHGVYYDPSKDLIAEIQKQGHD"
BASE COUNT 505 a 213 c 282 g 291 t 11 other
ORIGIN
1 cctcaaatca ctctttggca gcgacccctt gtctcaataa gagtaggggg ccagataagg
61 gaggctctct tagacacagg agcagatgat acagtattag aagacataga tttaccagga
121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat
181 caaatactta tagaaatttg tggaaaaaag gctataggta cagtattagt agggcctacg
241 cctgtcaaca taattggaag gaatctgttg actcagcttg gctgtacact aaattttcca
301 attagtccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtc
361 aaacaatggc cgttgacaga agaaaaaata aaagcattaa cagcaatttg tgaagaaatg
421 gagaaggaag gaaaaattac aaaaattggg cctgagaatc catataacac tccagtattt
481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaacttaat
541 aaaagaactc aagacttttg ggaggttcaa ttaggaatac cacacccagc agggttaaaa
601 aagaaaaaat cagtgacagt actggatgtg ggggatgcat atttttcagt tcccttagat
661 gaaagcttta gaaaatatac tgcattcacc ataccgagca taaataatga aacaccaggg
721 attagatatc aatataatgt gctrccacag ggatggaaag gatcaccatc aatattccag
781 agtagcatga caaaaatctt agagcccttt agagcaaaaa atccagaaat agtcatytat
841 caatatatgg atgacytgta tgtaggrtct gacttagaaa tagggcaaca tagrgcaaaa
901 atagaggagt taagagaaca tctattaagg tggggattta ccacaccaga caagaaacat
961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacar atggacagta
1021 cagactatac agctgccaga aaaggatawc tggactgtca atgacataca gaagttagtg
1081 ggaaaattaa actgggcaag tcagatttac tcagggatca argtaaagca actttgtaaa
1141 ctccttaggg ggrcyaaagc actaacagac atagtaccac tractgaaga agcagaatta
1201 gaattggcag agaacaggga aattctaaaa gagcaagtac atggagtata ttatgaccca
1261 tcaaaagact tgatagcaga aatacagaaa cagggtcatg ac
//
last modified: Tue May 31 10:56 2022