HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    JN247065		    1302 bp    RNA     linear	VRL 26-OCT-2011
DEFINITION  HIV-1 isolate 052-2337-P-B from Malawi pol protein (pol) gene,
	    partial cds
ACCESSION   JN247065
VERSION     JN247065.1 GI:353560521
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Eshleman,S.H., Hudelson,S.E., Redd,A.D., Wang,L., Debes,R.,
	    Chen,Y.Q., Martens,C.A., Ricklefs,S.M., Selig,E.J., Porcella,S.F.,
	    Munshaw,S., Ray,S.C., Piwowar-Manning,E., McCauley,M.,
	    Hosseinipour,M.C., Kumwenda,J., Hakim,J.G., Chariyalertsak,S., de
	    Bruyn,G., Grinsztejn,B., Kumarasamy,N., Makhema,J., Mayer,K.H.,
	    Pilotto,J., Santos,B.R., Quinn,T.C., Cohen,M.S. and Hughes,J.P.
  TITLE     Analysis of Genetic Linkage of HIV From Couples Enrolled in the HIV
	    Prevention Trials Network 052 Trial.
  JOURNAL   J. Infect. Dis.. 204(12); 1918-26 (2011)
  PUBMED    21990420
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Eshleman,S.H., Hudelson,S.E., Redd,A.D., Wang,L., Debes,R.,
	    Chen,Y.Q., Martens,C.A., Ricklefs,S.M., Selig,E.J., Porcella,S.F.,
	    Mushaw,S., Ray,S.C., Piwowar-Manning,E., McCauley,M.,
	    Hosseinipour,M.C., Kumwenda,J., Hakim,J.G., Chariyalertsak,S., de
	    Bruyn,G., Grinsztejn,B., Kumarasamy,N., Makhema,J., Mayer,K.H.,
	    Pilotto,J., Santos,B.R., Quinn,T.C., Cohen,M.S. and Hughes,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUL-2011) Pathology, The Johns Hopkins Medical
	    Institutions, 720 Rutland Ave Ross 646, Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="052-2337-P-B"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Malawi"
		     /collection_date="2009"
		     /note="subtype: C"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AER11948.1"
		     /db_xref="GI:353560522"
		     /translation="PQITLWQRPLVTIKVGGQIKEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQIMIEICGKKAIGSVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLSEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDESFRKYTAFTIPSINNEAPGIRYQYNVLPQGWKGSPSIFQASMTKILEPFRAQYPE
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKALTDIV
		     PLTEEAELELAENREILKEPVHGVYYDPSKDLVAEIQKQGQD"
BASE COUNT	506 a	 215 c	  289 g    292 t
ORIGIN
       1 cctcagatca ctctttggca gcgacccctt gtcacaataa aagtaggggg ccagataaag 
      61 gaggctctct tagatacagg agcagatgat acagtcttag aagaaataaa tttgccaggg 
     121 aaatggaagc caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caaataatga tagaaatttg tggaaaaaag gctataggct cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatatgttg actcaacttg gctgtacact aaattttcca 
     301 ataagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt 
     361 aaacagtggc cattgtcaga agaaaaaata aaagcattaa cagcaatttg tgaggaaatg 
     421 gagaaggaag gaaaaattac aaaaattggg cctgaaaacc catataacac cccagtattt 
     481 gctataaaaa agaaggacag tactaagtgg agaaaattag tagattttag ggaactcaat 
     541 aaaagaactc aagacttttg ggaggttcaa ttaggaatac cacacccagc aggattaaaa 
     601 aagaaaaaat cagtgacagt actggacgtg ggggatgcat atttttcagt tcctttagat 
     661 gaaagcttca ggaaatatac tgcattcacc atacctagta taaacaatga agcaccgggg 
     721 attagatatc aatataatgt gcttccacag ggatggaaag gatcaccatc aatattccag 
     781 gctagcatga caaaaatctt ggaacccttt agggcacaat atccagaaat cgttatctat 
     841 caatacatgg atgacttgta tgtaggatca gatttagaaa tagggcaaca tagagcaaaa 
     901 atagaggagt taagagaaca cctattgaga tggggattta ccacaccaga caaaaagcat 
     961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta 
    1021 cagcctatag tattgccaga aaaggagagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaactaa actgggcaag tcagatttat gcagggatta aagtaagaca actgtgtaaa 
    1141 ctccttaggg gagccaaagc attaacagac atagtaccac taacagaaga agcagaatta 
    1201 gaattggcag agaacagaga gattctaaaa gaaccagtac atggggtcta ttatgaccca 
    1261 tcaaaagact tggtagctga aatacagaaa caagggcagg ac
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health