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LOCUS JN247065 1302 bp RNA linear VRL 26-OCT-2011
DEFINITION HIV-1 isolate 052-2337-P-B from Malawi pol protein (pol) gene,
partial cds
ACCESSION JN247065
VERSION JN247065.1 GI:353560521
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Eshleman,S.H., Hudelson,S.E., Redd,A.D., Wang,L., Debes,R.,
Chen,Y.Q., Martens,C.A., Ricklefs,S.M., Selig,E.J., Porcella,S.F.,
Munshaw,S., Ray,S.C., Piwowar-Manning,E., McCauley,M.,
Hosseinipour,M.C., Kumwenda,J., Hakim,J.G., Chariyalertsak,S., de
Bruyn,G., Grinsztejn,B., Kumarasamy,N., Makhema,J., Mayer,K.H.,
Pilotto,J., Santos,B.R., Quinn,T.C., Cohen,M.S. and Hughes,J.P.
TITLE Analysis of Genetic Linkage of HIV From Couples Enrolled in the HIV
Prevention Trials Network 052 Trial.
JOURNAL J. Infect. Dis.. 204(12); 1918-26 (2011)
PUBMED 21990420
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Eshleman,S.H., Hudelson,S.E., Redd,A.D., Wang,L., Debes,R.,
Chen,Y.Q., Martens,C.A., Ricklefs,S.M., Selig,E.J., Porcella,S.F.,
Mushaw,S., Ray,S.C., Piwowar-Manning,E., McCauley,M.,
Hosseinipour,M.C., Kumwenda,J., Hakim,J.G., Chariyalertsak,S., de
Bruyn,G., Grinsztejn,B., Kumarasamy,N., Makhema,J., Mayer,K.H.,
Pilotto,J., Santos,B.R., Quinn,T.C., Cohen,M.S. and Hughes,J.P.
TITLE Direct Submission
JOURNAL Submitted (13-JUL-2011) Pathology, The Johns Hopkins Medical
Institutions, 720 Rutland Ave Ross 646, Baltimore, MD 21205, USA
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="052-2337-P-B"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Malawi"
/collection_date="2009"
/note="subtype: C"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AER11948.1"
/db_xref="GI:353560522"
/translation="PQITLWQRPLVTIKVGGQIKEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQIMIEICGKKAIGSVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLSEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDESFRKYTAFTIPSINNEAPGIRYQYNVLPQGWKGSPSIFQASMTKILEPFRAQYPE
IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKALTDIV
PLTEEAELELAENREILKEPVHGVYYDPSKDLVAEIQKQGQD"
BASE COUNT 506 a 215 c 289 g 292 t
ORIGIN
1 cctcagatca ctctttggca gcgacccctt gtcacaataa aagtaggggg ccagataaag
61 gaggctctct tagatacagg agcagatgat acagtcttag aagaaataaa tttgccaggg
121 aaatggaagc caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat
181 caaataatga tagaaatttg tggaaaaaag gctataggct cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatatgttg actcaacttg gctgtacact aaattttcca
301 ataagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt
361 aaacagtggc cattgtcaga agaaaaaata aaagcattaa cagcaatttg tgaggaaatg
421 gagaaggaag gaaaaattac aaaaattggg cctgaaaacc catataacac cccagtattt
481 gctataaaaa agaaggacag tactaagtgg agaaaattag tagattttag ggaactcaat
541 aaaagaactc aagacttttg ggaggttcaa ttaggaatac cacacccagc aggattaaaa
601 aagaaaaaat cagtgacagt actggacgtg ggggatgcat atttttcagt tcctttagat
661 gaaagcttca ggaaatatac tgcattcacc atacctagta taaacaatga agcaccgggg
721 attagatatc aatataatgt gcttccacag ggatggaaag gatcaccatc aatattccag
781 gctagcatga caaaaatctt ggaacccttt agggcacaat atccagaaat cgttatctat
841 caatacatgg atgacttgta tgtaggatca gatttagaaa tagggcaaca tagagcaaaa
901 atagaggagt taagagaaca cctattgaga tggggattta ccacaccaga caaaaagcat
961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta
1021 cagcctatag tattgccaga aaaggagagc tggactgtca atgacataca gaagttagtg
1081 ggaaaactaa actgggcaag tcagatttat gcagggatta aagtaagaca actgtgtaaa
1141 ctccttaggg gagccaaagc attaacagac atagtaccac taacagaaga agcagaatta
1201 gaattggcag agaacagaga gattctaaaa gaaccagtac atggggtcta ttatgaccca
1261 tcaaaagact tggtagctga aatacagaaa caagggcagg ac
//
last modified: Tue May 31 10:56 2022