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LOCUS	    JN247049		    1302 bp    RNA     linear	VRL 26-OCT-2011
DEFINITION  HIV-1 isolate 052-1692-P-A from Malawi pol protein (pol) gene,
	    partial cds
ACCESSION   JN247049
VERSION     JN247049.1 GI:353560489
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Eshleman,S.H., Hudelson,S.E., Redd,A.D., Wang,L., Debes,R.,
	    Chen,Y.Q., Martens,C.A., Ricklefs,S.M., Selig,E.J., Porcella,S.F.,
	    Munshaw,S., Ray,S.C., Piwowar-Manning,E., McCauley,M.,
	    Hosseinipour,M.C., Kumwenda,J., Hakim,J.G., Chariyalertsak,S., de
	    Bruyn,G., Grinsztejn,B., Kumarasamy,N., Makhema,J., Mayer,K.H.,
	    Pilotto,J., Santos,B.R., Quinn,T.C., Cohen,M.S. and Hughes,J.P.
  TITLE     Analysis of Genetic Linkage of HIV From Couples Enrolled in the HIV
	    Prevention Trials Network 052 Trial.
  JOURNAL   J. Infect. Dis.. 204(12); 1918-26 (2011)
  PUBMED    21990420
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Eshleman,S.H., Hudelson,S.E., Redd,A.D., Wang,L., Debes,R.,
	    Chen,Y.Q., Martens,C.A., Ricklefs,S.M., Selig,E.J., Porcella,S.F.,
	    Mushaw,S., Ray,S.C., Piwowar-Manning,E., McCauley,M.,
	    Hosseinipour,M.C., Kumwenda,J., Hakim,J.G., Chariyalertsak,S., de
	    Bruyn,G., Grinsztejn,B., Kumarasamy,N., Makhema,J., Mayer,K.H.,
	    Pilotto,J., Santos,B.R., Quinn,T.C., Cohen,M.S. and Hughes,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUL-2011) Pathology, The Johns Hopkins Medical
	    Institutions, 720 Rutland Ave Ross 646, Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="052-1692-P-A"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Malawi"
		     /collection_date="2008"
		     /note="subtype: C"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AER11932.1"
		     /db_xref="GI:353560490"
		     /translation="PQITLWQRPLVTIKVGGQVKEALLDTGADDTVLEDINLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGKKAIGSVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICKEMEKEGKISKIGPDNPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIP
		     LDESFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQASMTRILEPFRTQNPD
		     IVIYQYMDDLYVGSDLEIGQHRAKIEDLREHLLKWGLTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIQVRQLCKLLRGAKALTDIV
		     PLTEEAELELAENREILKEPVHGVYYDPSKDLIAELQKQKQE"
BASE COUNT	506 a	 217 c	  281 g    298 t
ORIGIN
       1 cctcaaatca ctctttggca gcgacccctt gtcacaataa aagtaggggg ccaagtaaag 
      61 gaggctctct tagatacagg ggcagatgat acagtattag aagacataaa tttgccagga 
     121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caaatactta tagaaatttg tggaaaaaag gctataggtt cagtattagt agggcctaca 
     241 cctgtcaaca taattggaag gaatatgttg actcagcttg gatgcacact aaattttcca 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtc 
     361 aaacaatggc cattgacaga agaaaagata aaagcattaa cagaaatttg taaagaaatg 
     421 gagaaggaag gaaaaatttc aaaaattggg cctgataatc catataacac tccagtattt 
     481 gccataaaaa agaaggatag tactaagtgg agaaaattag tagatttcag ggaactcaat 
     541 aaaagaactc aagatttttg ggaagttcaa ttaggaatac cacacccagc agggttaaaa 
     601 aagaaaaaat cagtgacagt actggatgtg ggggatgcat atttttcaat ccccttagat 
     661 gaaagcttca ggaagtatac tgcatttacc atacctagta caaacaatga aacaccaggg 
     721 attagatatc aatataatgt gcttccacag ggatggaaag gatcaccagc aatattccag 
     781 gctagcatga caagaatttt agagcccttt aggacgcaaa atccagacat agttatctat 
     841 caatatatgg atgacttgta tgtaggatct gacttagaaa tagggcaaca tagagcaaaa 
     901 atagaggact taagagaaca tttattgaaa tggggactta ccacaccaga caagaaacat 
     961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta 
    1021 cagcctatac agctgccaga aaaagatagt tggactgtca atgatataca aaagttagtg 
    1081 ggaaaattaa actgggctag tcagatttac ccagggattc aagtaaggca actgtgcaaa 
    1141 ctccttaggg gagccaaagc actaacagac atagtacctc tgactgaaga agcagaatta 
    1201 gaattggcag agaacaggga aattctaaaa gaaccagtac atggggtata ttatgacccc 
    1261 tcaaaagact tgatagctga actacagaaa cagaagcagg aa
//
last modified: Tue May 31 10:56 2022


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