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LOCUS JN247049 1302 bp RNA linear VRL 26-OCT-2011
DEFINITION HIV-1 isolate 052-1692-P-A from Malawi pol protein (pol) gene,
partial cds
ACCESSION JN247049
VERSION JN247049.1 GI:353560489
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Eshleman,S.H., Hudelson,S.E., Redd,A.D., Wang,L., Debes,R.,
Chen,Y.Q., Martens,C.A., Ricklefs,S.M., Selig,E.J., Porcella,S.F.,
Munshaw,S., Ray,S.C., Piwowar-Manning,E., McCauley,M.,
Hosseinipour,M.C., Kumwenda,J., Hakim,J.G., Chariyalertsak,S., de
Bruyn,G., Grinsztejn,B., Kumarasamy,N., Makhema,J., Mayer,K.H.,
Pilotto,J., Santos,B.R., Quinn,T.C., Cohen,M.S. and Hughes,J.P.
TITLE Analysis of Genetic Linkage of HIV From Couples Enrolled in the HIV
Prevention Trials Network 052 Trial.
JOURNAL J. Infect. Dis.. 204(12); 1918-26 (2011)
PUBMED 21990420
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Eshleman,S.H., Hudelson,S.E., Redd,A.D., Wang,L., Debes,R.,
Chen,Y.Q., Martens,C.A., Ricklefs,S.M., Selig,E.J., Porcella,S.F.,
Mushaw,S., Ray,S.C., Piwowar-Manning,E., McCauley,M.,
Hosseinipour,M.C., Kumwenda,J., Hakim,J.G., Chariyalertsak,S., de
Bruyn,G., Grinsztejn,B., Kumarasamy,N., Makhema,J., Mayer,K.H.,
Pilotto,J., Santos,B.R., Quinn,T.C., Cohen,M.S. and Hughes,J.P.
TITLE Direct Submission
JOURNAL Submitted (13-JUL-2011) Pathology, The Johns Hopkins Medical
Institutions, 720 Rutland Ave Ross 646, Baltimore, MD 21205, USA
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="052-1692-P-A"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Malawi"
/collection_date="2008"
/note="subtype: C"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AER11932.1"
/db_xref="GI:353560490"
/translation="PQITLWQRPLVTIKVGGQVKEALLDTGADDTVLEDINLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKKAIGSVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICKEMEKEGKISKIGPDNPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIP
LDESFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQASMTRILEPFRTQNPD
IVIYQYMDDLYVGSDLEIGQHRAKIEDLREHLLKWGLTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIQVRQLCKLLRGAKALTDIV
PLTEEAELELAENREILKEPVHGVYYDPSKDLIAELQKQKQE"
BASE COUNT 506 a 217 c 281 g 298 t
ORIGIN
1 cctcaaatca ctctttggca gcgacccctt gtcacaataa aagtaggggg ccaagtaaag
61 gaggctctct tagatacagg ggcagatgat acagtattag aagacataaa tttgccagga
121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat
181 caaatactta tagaaatttg tggaaaaaag gctataggtt cagtattagt agggcctaca
241 cctgtcaaca taattggaag gaatatgttg actcagcttg gatgcacact aaattttcca
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtc
361 aaacaatggc cattgacaga agaaaagata aaagcattaa cagaaatttg taaagaaatg
421 gagaaggaag gaaaaatttc aaaaattggg cctgataatc catataacac tccagtattt
481 gccataaaaa agaaggatag tactaagtgg agaaaattag tagatttcag ggaactcaat
541 aaaagaactc aagatttttg ggaagttcaa ttaggaatac cacacccagc agggttaaaa
601 aagaaaaaat cagtgacagt actggatgtg ggggatgcat atttttcaat ccccttagat
661 gaaagcttca ggaagtatac tgcatttacc atacctagta caaacaatga aacaccaggg
721 attagatatc aatataatgt gcttccacag ggatggaaag gatcaccagc aatattccag
781 gctagcatga caagaatttt agagcccttt aggacgcaaa atccagacat agttatctat
841 caatatatgg atgacttgta tgtaggatct gacttagaaa tagggcaaca tagagcaaaa
901 atagaggact taagagaaca tttattgaaa tggggactta ccacaccaga caagaaacat
961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta
1021 cagcctatac agctgccaga aaaagatagt tggactgtca atgatataca aaagttagtg
1081 ggaaaattaa actgggctag tcagatttac ccagggattc aagtaaggca actgtgcaaa
1141 ctccttaggg gagccaaagc actaacagac atagtacctc tgactgaaga agcagaatta
1201 gaattggcag agaacaggga aattctaaaa gaaccagtac atggggtata ttatgacccc
1261 tcaaaagact tgatagctga actacagaaa cagaagcagg aa
//
last modified: Tue May 31 10:56 2022